Conserved Protein Domain Family
RlmN

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COG0820: RlmN (this model, PSSM-Id:223890 is obsolete and has been replaced by 440582)
Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37 [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 223890
Aligned: 46 rows
Threshold Bit Score: 254.16
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15889929  60 KPSLIGLTReemgeALAEIG-VPQKQVKMRVSQLWNWLYVRGVSDFDNMTN-VAKELREKLKAAFTIARPEIVEEQISND 137 Agrobacterium tumef...
15894473   1 ---------------------------------MIKESIILKNLEVPTGNIcVIKGDKGKLEFLSLGDYGKEVNVKADFL 47  Clostridium acetobu...
19553223  18 PTHFADLND-----EARIEAlKELGLPKFRLNQIARHYYGRLEADPLTMTD-LPEGARQEVKDALFPTLMSPLRVVETDD 91  Corynebacterium glu...
3287985   16 PRHLADLDA-----AGRASAvAELGLPAFRAKQLAHQYYGRLIADPRQMTD-LPAAVRDRIAGAMFPNLLTASADITCDA 89  Mycobacterium tuber...
15610016     --------------------------------------------------------------------------------     Mycobacterium tuber...
15610017  16 PRHLADLDA-----AGRASAvAELGLPAFRAKQLAHQYYGRLIADPRQMTD-LPAAVRDRIAGAMFPNLLTASADITCDA 89  Mycobacterium tuber...
15642910   1 ----------------------------------------MSASSQSPKGDgLLQTISVKILKRVGKEEVAYVYLGETSR 40  Thermotoga maritima
15639062   1 MEWCCALSGl----LPEEIQkVCAFAERFRGVQVFRWIAAGCTD-FHAMSD-LSSETRARLARACVISDTRVYTTLRDVD 74  Treponema pallidum
15606673   1 ---------------------------------------------------------------------MRLSKVLRSDL 11  Aquifex aeolicus
3287936    5 PAPLLSLSL-----PELTDWvQTTGQPAYRGKQIHQWLYQKGARSLTAMTD-LPKVWRE--KNVHYPIGRSVIDHCAVAP 76  Synechocystis sp. P...
15889929 138 G-TRKWLMRFPPRGAgrpvEIETVYIPEEGR-GTLCISSQVGCSLTCSFCHTGTQRLVR-NLTAEEILSQLLLAR-DRLG 213 Agrobacterium tumef...
15894473  48 G--ITRDLEGVPNGK---------VQPLTKK-WVVTMSTQYGCDSGCKFCDVPKVGKGV-NVTYNDLKTQLEQALn-LHP 113 Clostridium acetobu...
19553223  92 DtTQKTLWK-LHDGT----LLESVLMRYSDR-STLCISSQAGCGMACPFCATGQGGLDR-NLSIGEIVDQVRN-A-AATM 162 Corynebacterium glu...
3287985   90 GqTRKTLWR-AVDGT----MFESVLMRYPRR-NTVCISSQAGCGMACPFCATGQGGLTR-NLSTAEILEQVRAGA-AALR 161 Mycobacterium tuber...
15610016     --------------------------------------------------------------------------------     Mycobacterium tuber...
15610017  90 GqTRKTLWR-AVDGT----MFESVLMRYPRR-NTVCISSQAGCGMACPFCATGQGGLTR-NLSTAEILEQVRAGA-AALR 161 Mycobacterium tuber...
15642910  41 G-NLVEFVESIQPP-----------VPREKK-WVLIVSTLAGCPVGCLMCDAG--GFYRgKLSADEIFEQIDFLVkSRYP 105 Thermotoga maritima
15639062  75 G-TLKLGIE-LKDKR----RVEAVLLVDQVSrKTACLSCQVGCPMACAFCQTGQLGFAR-NLSASEIVEQFLHLE-RCVG 146 Treponema pallidum
15606673  12 N---TLFLFELEDG-------YTVESVFYRG-DTLCVSTQVGCPVRCTFCASGKNGLFR-NLSAEEIYNQYELLKd---- 75  Aquifex aeolicus
3287936   77 DhTRKYLLR-LADGL----IIETVGIPSSKR-LTVCVSSQVGCAMDCNFCATGKGGFIR-NLESHEIVDQVLT-----VQ 144 Synechocystis sp. P...
15889929 214 DFPdgstpvgayvpseGRKVSNIVMMGMGEPLYN---FEHVKTALLIATDGDGLSLSK--RRVTLSTSG---VVPEIFRT 285 Agrobacterium tumef...
15894473 114 EID-------------RTERLNIHYARMGEPSWNndvLDFTRNLKNIVKPYIGESLIHp-VFTTMCPNKnkfLAHRINEW 179 Clostridium acetobu...
19553223 163 QSE-------------GGRLSNIVFMGMGEPLAN---YKRVVSAVRQITQPSPAGFGIsqRSVTVSTVG---LAPAIRKL 223 Corynebacterium glu...
3287985  162 DDF-------------GDRLSNVVFMGMGEPLAN---YARVLAAVQRITARPPSGFGIsaRAVTVSTVG---LAPAIRNL 222 Mycobacterium tuber...
15610016   1 ---------------------------WGEPLAN---YARVLAAVQRITARPPSGFGIsaRAVTVSTVG---LAPAIRNL 47  Mycobacterium tuber...
15610017 162 DDF-------------GDRLSNVVFMGMGG----------AAGQLRQGVGRSSAHY----RAAAVRFRD---FGPR---- 207 Mycobacterium tuber...
15642910 106 NGRi------------PSEKFKIQFARMGEPALN---EAVLDVLKELPARYEAPGLMP--SISTVAPCGtdsFFEDLLKI 168 Thermotoga maritima
15639062 147 T------------------LDNVVFMGMGEPMLN---LDAVCRAIEILSHPQGRDLSE--KRITISTSG---HCRGIYSL 200 Treponema pallidum
15606673  76 ----------------RYPIKRIAVAGIGEPLSN---WRNVKEAFEKFK-KEGLKVS------FYTTGF---PTKHLREL 126 Aquifex aeolicus
3287936  145 EEF-------------HERVSNVVFMGMGEPLLN---LPQVVKAVECLNQVVGIGQ----RALTISTVG---LPGKIRQL 201 Synechocystis sp. P...
15889929 286 G------DEIGVMLAISLHAVRDDLRDMLVPINKKYPLKELIEACRNYPGVSNa----RRITFEYVMLKDVNDS-LEDAK 354 Agrobacterium tumef...
15894473 180 VdiknnlFQGDAGLQLSINSTNENQRRDMFRGNALTLNEISSIGNDLPMPKGRkyclnFALADEYEVDAKVLKKlFDPSK 259 Clostridium acetobu...
19553223 224 Ad-----EEMSVTLAVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYADKSG-----RRVSIEYALIRDVNDQ-DWRAD 292 Corynebacterium glu...
3287985  223 Ad-----ARLGVTLALSLHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTG-----RRVSIEYALIRDVNDQ-PWRAD 291 Mycobacterium tuber...
15610016  48 Ad-----ARLGVTLALSLHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTG-----RRVSIEYALIRDVNDQ-PWRAD 116 Mycobacterium tuber...
15610017 208 Gd-----GVDGGSGPCYPQPCRRAARRDPGAVAARPRR----RVARYTS--SG-----Q---QP------VEDQrSARCG 262 Mycobacterium tuber...
15642910 169 Kek---hYRGKFQLQFSIHSTDEKERDQIIPVKKWSLEKISEFGKRFVKENDRkitlnFAVAQEYSLDPKVIIRvFDPEK 245 Thermotoga maritima
15639062 201 Ad-----RALQVRLAVSLTTANAPLRARLMPRAAHDSLAKLKSAIRYFNEKSG-----KRVTLELALMRGVNTS-ERHAQ 269 Treponema pallidum
15606673 127 Lh------LPHSGVTISLHSLNDETRKYLMPHAGKLEEVIKVLEEELPKLSSKk---rKKVSLAYILLKDVNDS-QEELE 196 Aquifex aeolicus
3287936  202 Ad-----RHLQVTFAVSLHAPNQTLRQSLIPSARHYPLEQLLADCRAYVETTG-----RRVTFEYVLLAGVNDQ-PVHAE 270 Synechocystis sp. P...
15889929 355 MLVQLLKGVPa---KINLIPFNPWPGTN-YQCSEWAQIEKFADFIN-Q-AGYASPIRTPRGRDILAACGQLKSES-ERMR 427 Agrobacterium tumef...
15894473 260 FMVKITPLHK----TVSSIENDIKTTKGyVSYTPYKDIENDLKKMG---FDVLVFVPSYDEDLGRITCGNVILSGsLPKC 332 Clostridium acetobu...
19553223 293 MLGEKLHKALgsrvHVNLIPLNPTPGSK-WDAAPKARQDEFVRRVI-A-KGVPCTVRDTKGQEIAAACGQLAAEEsA--- 366 Corynebacterium glu...
3287985  292 LLGKRLHRVLgplaHVNLIPLNPTPGSD-WDASPKPVEREFVKRVR-A-KGVSCTVRDTRGREISAACGQLAAVGg---- 364 Mycobacterium tuber...
15610016 117 LLGKRLHRVLgplaHVNLIPLNPTPGSD-WDASPKPVEREFVKRVR-A-KGVSCTVRDTRGREISAACGQLAAVGg---- 189 Mycobacterium tuber...
15610017 263 PVLRQCDRATgvy------------------------------------------------------------------- 275 Mycobacterium tuber...
15642910 246 FLVKITPVNP----TYRSKENNLNSDVD-VERKELLKHRNFIEELKkAgFEVILSIGELEENKIGSNCGQYVQRHlMSER 320 Thermotoga maritima
15639062 270 EVIDFAHGLNv---HVNLIPWNPVASIH-FETPREVEVAHFEALLM-R-ARIPVTRRYQRGNGIGGACGQLGKTAgV--- 340 Treponema pallidum
15606673 197 KLAELAKRLGv---SITLLYYNKTFEFEpVSEKEYEEAFLFLRSKG-----VRVTLSTRFRKDKLGGCGTLVVNRnKELT 268 Aquifex aeolicus
3287936  271 ELAQKLRgf---qtHVNLIPYNPISEVD-YQRPTEAQINQFAQVLS-D-HRIAVSVRYSRGVQADAACGQLRASRkEELA 344 Synechocystis sp. P...
15889929 428 K 428 Agrobacterium tumefaciens str. C58 (Cereon)
15894473 333 K 333 Clostridium acetobutylicum
19553223     -     Corynebacterium glutamicum ATCC 13032
3287985      -     Mycobacterium tuberculosis
15610016     -     Mycobacterium tuberculosis H37Rv
15610017     -     Mycobacterium tuberculosis H37Rv
15642910 321 K 321 Thermotoga maritima
15639062     -     Treponema pallidum
15606673 269 K 269 Aquifex aeolicus
3287936  345 E 345 Synechocystis sp. PCC 6803
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