5C0M


Conserved Protein Domain Family
DUF1325

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pfam07039: DUF1325 (this model, PSSM-Id:399787 is obsolete and has been replaced by 462071)
SGF29 tudor-like domain
This domain is found in the yeast protein SAGA-associated factor 29. This domain is related to members of the Tudor domain superfamily such as pfam05641. The SAGA complex is involved in RNA polymerase II-dependent transcriptional regulation. The membership of the tudor domain superfamily suggests this domain may bind to RNA.
Statistics
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PSSM-Id: 399787
Aligned: 103 rows
Threshold Bit Score: 105.355
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5C0M_A             46 GDKVAAr-vKAV--DGDEQWILAEVVSysHATNKYEVDDIDe---------eGKERHTLSRRRVIPLPQWKANPETDP-- 111
XP_012191397      176 GRKVAV---LPSktNEESDWLKASVLSytKSTNEYTVQDDDep--------gPDGTYKVGMDNIIPLPISLHTMPAS--- 241 Pseudozyma...
XP_002906919      158 GCHVAA-----KvaRSHELWIMARVVKfnADTNTYEVEDVDagdddeddvdaPRRHYIVPWQQVVEL------PGDSLpe 226 Phytophtho...
XP_002182411      129 GEQVAA---KVTrtDENGSWILASVQRfyTDTETYDVQDEDd----------TSKLIRLPWSHVMRLSTGAEG------- 188 Phaeodacty...
CBJ26159          133 GEQVAA---KVTntNENGSWILAEIIRylAGRACYEVKDADd----------PLKQIEVPDNNVIRLREGGQ-------- 191 Ectocarpus...
Q8RXY6            132 GEQVAAr--VTAedAEKDEWFVVKVIHfdRETKEVEVLDEEpgdd---eeggGQRTYKLSMSCILPFPKRNDPSSTQ--- 203 thale cress
XP_006663959      145 GEQVAAk--VKSd-EEKDEWVVVKVIHfdKETKEYEVLDEEpgdd----eesaQKKYKLPMSDIIPFPKKGDPSSAP--- 214 malo sina
jgi:OSTLU_24552   180 GDLVAAnvgALNqsAGGQEWIVATVTRysPTEREFEIVDADed--------aEKHVYRLPQKFVIPLPKTASVKQSQ--- 248 Ostreococc...
jgi:MICPUN_108267  43 GERVAAnigEVSgdPGAQEWIVAVVVAhkPEEGAYEVMDADees-----ddgSGQVYHIPEDLVIAMPRSALCREGQ--- 114 Micromonas...
XP_003057399      191 GERVAAnigEVTagEGAQEWIVAVVVQyiAEERAYEVMDADedd-----pegGGHVYHLPEHLVIPMPRSASARDGQV-- 263 Micromonas...
5C0M_A            112 ----EalFQKEQLVLALYPQTTCFYRALIHAPP-----------------QRPQDDYSVLFEDTSYAdgy-spPLNVAQR 169
XP_012191397      242 ----D--YAPGSRVLGMYPDTSCFYGATVKSGGpgltrnanlaklvkkepELLEAKYNLEFDDDNGE------IRQVPAW 309 Pseudozyma...
XP_002906919      227 gewiQ--YAVNERVMAMYPNTTSFFRSTIRVPN-----------------PKGAPYVILKFDEDEDEhgf-vpDRKVPFR 286 Phytophtho...
XP_002182411      189 ----C--FKKDNDCMAIFPETTSFYRAKISKDPiwkv---------drlgEPTVKEIIVKFEDDDDAqgr-tpHRRVPAR 252 Phaeodacty...
CBJ26159          192 ----G--FAKGDDVLAVFPDTTSFYRGTISKQPvrk--------------aglVAELVVQFEDDADQdtgktpHRRINSK 251 Ectocarpus...
Q8RXY6            204 ----E--FIPGKHVLAVYPGTTALYKATVISTPr----------------kRKSDEYLLEFDDDEEDga--lpQRTVPFH 259 thale cress
XP_006663959      215 ----D--FGQGRQVLAVYPGTTALYRATVASNr-----------------kRKSDDYLLLFDDDEEDgs--lpQRPVPFH 269 malo sina
jgi:OSTLU_24552   249 ----N--FPAGTSVLAVYPNTTTFYKAKVVQPArr-------------lpNAEYSEFVLEFEDDGDAdg--qaHRPVPFR 307 Ostreococc...
jgi:MICPUN_108267 115 ----N--FHPGTVVLAVYPMTTTFYRAVVVQSArk--------------lGSEYGDFLLEFEDDGDAdg--lpQRPVPYM 172 Micromonas...
XP_003057399      264 ----N--LSRGTTVLAVYPATTTFYRAVVVQQAqk--------------iNGEFGEFLLEFEDDGDAdg--lpQRPVPFM 321 Micromonas...
5C0M_A            170 YVVAC 174
XP_012191397      310 LVVQS 314 Pseudozyma hubeiensis SY62
XP_002906919      287 FVAPl 291 Phytophthora infestans T30-4
XP_002182411      253 YVIPI 257 Phaeodactylum tricornutum CCAP 1055/1
CBJ26159          252 LVLAQ 256 Ectocarpus siliculosus
Q8RXY6            260 KVVAL 264 thale cress
XP_006663959      270 RVVPL 274 malo sina
jgi:OSTLU_24552   308 HVVLF 312 Ostreococcus lucimarinus CCE9901
jgi:MICPUN_108267 173 HVVKH 177 Micromonas commoda
XP_003057399      322 HVVRH 326 Micromonas pusilla CCMP1545
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