Conserved Protein Domain Family
RtcR

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COG4650: RtcR (this model, PSSM-Id:226997 is obsolete and has been replaced by 443688)
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms]
Statistics
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PSSM-Id: 226997
Aligned: 6 rows
Threshold Bit Score: 965.164
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
17544941   1 MQKTVAIGFVGTVLDYAGKGNQRWERWRPSVGLCQQEDLVIHRLELLH--DARSRGLFERLRDDIAAVSPETEVRSVEIA 78  Ralstonia solanacearum
15833519   1 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPSLCICQQESLVIDRLELLH--DARSRSLFETLKRDIASVSPETEVVSVEIE 78  Escherichia coli O1...
15599777   1 MKRTVAIGFIGATLDRLGKGAARWQKWRPSIGLCQQPDLLIDRLELIHgnDARDLGLAERIRADIAAVSPHTEVRLQQME 80  Pseudomonas aerugin...
16766809   1 MRKTVAFGFVGTVLDYAGRGSQRWEKWRPTLCLCQQETLVVHRLELLY--DARSRSLFEGLKKDIASVSPETEVVGVEIA 78  Salmonella typhimur...
15803929   1 MRKTVAFGFVXTVLDYAGRGSQRWSKWRPSLCICQQESLVIDRLELLH--DARSRSLFETLKRDIASVSPETEVVSVEIE 78  Escherichia coli O1...
1176265    1 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLH--DARSRSLFETLKRDIASVSPETEVVSVEIE 78  Escherichia coli
17544941  79 LRDPWDFEEVYGMLHDFARGYAFDTDAEDYLIHITTGTHVAQICWFLLAEARYLPARLVQTSPPRKKAPGNIA-GSYALI 157 Ralstonia solanacearum
15833519  79 LHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGA-GEVTII 157 Escherichia coli O1...
15599777  81 LRNPWDFEEVYGALHDFVSAYPFDTEREDYLVHITTGTHVAQICWFLLTEARYLPARLVQTSPSRRKDEARHPeGSATLI 160 Pseudomonas aerugin...
16766809  79 IRNPWDFEEVYACLHDFARSHTFHPEDEDYLIHITTGTHVAQICWFLLAEARYLPARLAQTSPPRKKDKPHST-GDVTII 157 Salmonella typhimur...
15803929  79 LHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGA-GEVTII 157 Escherichia coli O1...
1176265   79 LHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGP-GEVTII 157 Escherichia coli
17544941 158 DLDLSRYDRIATRFAREREDTVSRLKSGIATRNPAFNRMIEQIERVASRSRSPMLLFGPTGAGKSFLARRVYEMKKARHQ 237 Ralstonia solanacearum
15833519 158 DLDLSLYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQ 237 Escherichia coli O1...
15599777 161 DLDLSRYDRIASRFRREQEESLALLKSGIATRNAAFNRSIEQIERVAVRSRAPMLLVGPTGAGKSFLARRIYELKRSRHQ 240 Pseudomonas aerugin...
16766809 158 DLDLSRYNDIATRFAQEREETLNFLKSGIATRNPCFNRMIEQIERVAIRSRSPILLNGPTGAGKSFLARRIYELKLARHQ 237 Salmonella typhimur...
15803929 158 DLDLSLYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQ 237 Escherichia coli O1...
1176265  158 DLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQ 237 Escherichia coli
17544941 238 LSGRFVEVNCATLRGDSAMSALFGHVKGAFTGAQTDRAGLLRSADGGLLFLDEIGELGLDEQAMLLKAIEEKRFLPFGSD 317 Ralstonia solanacearum
15833519 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 Escherichia coli O1...
15599777 241 LDGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSD 320 Pseudomonas aerugin...
16766809 238 FSGPFVEVNCATLRGDTAMSALFGHVKGAFTGAREERAGLLRSADGGMLFLDEVGELGADEQAMLLKAIEEKRFYPFGSD 317 Salmonella typhimur...
15803929 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 Escherichia coli O1...
1176265  238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 Escherichia coli
17544941 318 REAQSDFQLIAGTVRDLRQWVAEGRFREDLFARINLWTFDLPGLAQRPEDIEPNLDYELVRFAREHGEQVRFHTEARRAY 397 Ralstonia solanacearum
15833519 318 RQVSSDFQLIAGTVRDLRQLVADGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAW 397 Escherichia coli O1...
15599777 321 REVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAGRREDIEPNIDFELERHAREQGRQVRFNLEAKRRY 400 Pseudomonas aerugin...
16766809 318 QQVSSDFQLIAGTVRDLRQRVAEGTFREDLYARINLWTFELPGLRQRQEDIEPNLDYELERHAALTGDSVRFNTEARRAW 397 Salmonella typhimur...
15803929 318 RQVSSDFQLIAGTVRDLRQLVADGKFREDLYARINXWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAW 397 Escherichia coli O1...
1176265  318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAW 397 Escherichia coli
17544941 398 LRFVASPQARWSGNFRELSASVTRLATLAEGGRITEAGVEAEIGRLRRAWSgAEAPAgddTLAGLLGDGAAALDRFDRMQ 477 Ralstonia solanacearum
15833519 398 LAFATSPQATWRGNFRELSASVTRMATFASSGRITLDVVEDEINRLRYNWQ-ESRPS---ALTALLGAEAENIDLFDRMQ 473 Escherichia coli O1...
15599777 401 LAFAGSSEARWAGNFRELSASITRMATLADSGRIDEALVEEEILRLRQAWGlDAGRE---PLADLLGQRVEALDLFDRLQ 477 Pseudomonas aerugin...
16766809 398 LSFATSPQAAWRGNFRELSASVTRMATLADNGRITVETVDDEIARLRYSWN-DHRPS---ALDGLPGIDATALDLFDRMQ 473 Salmonella typhimur...
15803929 398 LAFATSPQATWRGNFRELSASVTRMATFASSGRITLDVVEDEINRLRYNWQ-ESRPS---ALTALLGAEAENIDLFDRMQ 473 Escherichia coli O1...
1176265  398 LAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQ-ESRPS---ALTALLGAEAENIDLFDRMQ 473 Escherichia coli
17544941 478 LESVVRICRESASLSDAGRRLFDVSRLEKAKVNDADRLRKYLARFGLDWQQVRGQAAN 535 Ralstonia solanacearum
15833519 474 LEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSS 531 Escherichia coli O157:H7
15599777 478 LQAVLEVCRGAKTLSEAGRRLFAVSRQDKRNPNDADRLRKYLARFGLDWAQIRA---- 531 Pseudomonas aeruginosa PA01
16766809 474 LENVVAVCRQAKTLSDAGRQLFNVSRQGKATVNDADRLRKYLARFGLTWDVLQN---- 527 Salmonella typhimurium LT2
15803929 474 LEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSS 531 Escherichia coli O157:H7 EDL933
1176265  474 LEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSS 531 Escherichia coli
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