2EPG


Conserved Protein Domain Family
RtcB

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pfam01139: RtcB (this model, PSSM-Id:395906 is obsolete and has been replaced by 426075)
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tRNA-splicing ligase RtcB
This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.
Statistics
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PSSM-Id: 395906
Aligned: 264 rows
Threshold Bit Score: 255.509
Created: 22-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2EPG_B           56 QLXNVATLP--------GIVEPALAXPDIHWG-YGFPIGGVAAFDpeeGGVVSPGGVGFDINCGVRLLASHLTLEDL--- 123 Thermus ther...
WP_015177742     82 QLANLANVRhp----qgGCVCRACATPDFHPGdAGVAIGSIVETA----GMVIPAATGSDINCGMRLHVADLSIEQFlsq 153 Oscillatoria...
WP_015126959     57 QLMNLANVRhp----agGCVCRACATPDFHPGdAGVAIGSVVETV----GQVIPAAVGSDINCGMRLHVANLTIDQFlak 128 Calothrix sp...
WP_015121855     57 QLANLASVRhp----agGYVCKCHATPDFHPGdAGIAIGSVVQTE----NMVIPAATGSDINCGMRLHVADLTIDEFlak 128 Rivularia sp...
Q4KAP7           57 QLMDFARVAhp----hgGEVKCACATPDFHTG-SPIPVGSVIVTS---HDMVVPQAIGTDINCGMRLHKLGLNYEQFmaq 128 Pseudomonas ...
CBJ79627         51 QLLDLASVHvpg---sdAKVCRTRATPDFHPG-AVAPVGCIVATT---EDLVIPAAIGTDINCGMRLLTTGLSYAEAnsq 123 Xenorhabdus ...
WP_012207445     51 QLLAFAAVRrhdgqgshGAVCRACATPDFHPG-TVAPVGSVVATP---SDFVIPAAIGTDINCSVRLLTTGARLDQLaph 126 Delftia acid...
CAS:CtCNB1_2374  80 QLLDFASVAdpq---ghGAVCKACATPDFHPG-SIAPVGAVVATS---PDFVIPAAIGTDINCGIRLLSTGLTQAQAelh 152 Comamonas th...
Q7NY50           65 QLLGFAATRsad---ghHGVCKACATPDFHPG-GIAPVGAVVATD---PEFVIPAAIGTDINCGLRLVSTGLQYETIaph 137 Chromobacter...
EFC45815        166 QLQDTARTL--------KCVRRATGQPDLHPG-KTFPVGAAISTV----DYIYPPLVGNDIGCGMSLYQTNLTSDRG--- 229 Naegleria gr...
2EPG_B          124 LPR-QKELA---DALY---RLVPSGV-GserrdvrfskRELKEILKEGAGWL---VKR----GYGYPEDVRFIESQ---- 184 Thermus ther...
WP_015177742    154 RDRfVELLK---GDYFfgtRDVSMTA------------KTARAMFQHGIPGWldaLRDka-tGSTANSDFEQLATEcert 217 Oscillatoria...
WP_015126959    129 RDLfVERMK---GDYFfgtRDVTMTA------------QTMRALFQYGVPGWvdaMLDqp-tGSVVKSDLEQLAQEseri 192 Calothrix sp...
WP_015121855    129 RNQfVELMK---GDYFfgtRDVTMSG------------LAMQALFEYGVPGWldvMLDsp-sGSVTKSNLEQLAAEtdni 192 Rivularia sp...
Q4KAP7          129 KAKwTALVR---GDLLegtRNIPTSP------------TAMSALFASGLGDFwaqVQQqdpiGLFAGADFAQLQRElsgl 193 Pseudomonas ...
CBJ79627        124 KEAlIQQLK---NTLLmdqRDVPVTP------------TSFSALFDEGLAAWlqeLPQq---GVWQQADFKRMHTElnai 185 Xenorhabdus ...
WP_012207445    127 KGRlVELLT---ASLLgsgRDVPVTT------------AAFRALFDHGPAAFvdrLNGq---GLWGHVDRDRLHRElaac 188 Delftia acid...
CAS:CtCNB1_2374 153 KSTiVQRLT---RVILqngRDVPVRS------------AGFKALFDEGPQAFieqLPDv---GLWQGVNRDRLQAElaec 214 Comamonas th...
Q7NY50          138 KDAlESRLT---HVLLdngRNLPVFS------------RGFAALFDAGPDAFidlLPRe---GLWAGVNRTRLLNElaac 199 Chromobacter...
EFC45815        230 ----LKQLEkwvKQLN---GLERGGIsG----------DESRPVLDVERKFF----------GLDSSEDLLSATSTnsen 282 Naegleria gr...
2EPG_B          185 ------------------------GRLPWA-----------NPDKVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYD-- 227 Thermus ther...
WP_015177742    218 fl-----------------ggsmnGDVKWA-----------PAELVPNDG-LVRDGGLGTIGGGNHFVEIQVVDEVVD-- 266 Oscillatoria...
WP_015126959    193 fl-----------------ggsmdGNWKLA-----------PEELVPDEG-LVRDGSLATIGSGNHFVEVQQVDQVEN-- 241 Calothrix sp...
WP_015121855    193 fl-----------------ggsmdGNWQLA-----------PDELVPDEE-LVRDGGLATIGGGNHFVEVQRVDKVIN-- 241 Rivularia sp...
Q4KAP7          194 he-----------------ssfarGSADYA-----------PEALQDLSRKILRDPGLGSLGGGNHFVEIQVVTELVD-- 243 Pseudomonas ...
CBJ79627        186 ls-----------------tqavqAHSRYA-----------PEAFFEHRE-IIRPASLGTVGSGNHFVELQIVDTILD-- 234 Xenorhabdus ...
WP_012207445    189 ig-----------------ldsfaGSARHA-----------PHAYLQERHAVFRDPCLGTVGSGNHFVELQVVDEVLD-- 238 Delftia acid...
CAS:CtCNB1_2374 215 vg-----------------lqgfaGRSRYA-----------PEALLQARE-LLRPPSAADLGSGNHFLEFCVVDEVYD-- 263 Comamonas th...
Q7NY50          200 vs-----------------ldsfdSAARYA-----------PEALVGTRE-LIRDPSLGTQGAGNHFVELQVVDQVLD-- 248 Chromobacter...
EFC45815        283 vdfelheattefiekyltyfdvdlGQLQEVtpnleseegvtSPPKSENKALEFAIRQLGTVGGGNHFAELQIVEKICNek 362 Naegleria gr...
2EPG_B          228 --EEAALAFGLFKGQVTVLIHTGSRGLGHQVCQDYVERFLkvaPRYGI--ELVDKQLAAAPIKS--PEGQDYLQAXAAAA 301 Thermus ther...
WP_015177742    267 --KATAYTWGVRSGQIAFMIHSGSRNVGKYIGGMWRDRAC---EAWATtlKHPKSRLFPLSVAAnpELVSSYLQAEATAA 341 Oscillatoria...
WP_015126959    242 --RALAHAWGVREGQMAFMIHSGSRNVGKYIGGMWRDRSQ---AAWPKglKYPDANIFPLSTHShpQLVASYLQAEATAA 316 Calothrix sp...
WP_015121855    242 --SALAYAWGIKEGQIAFMIHSGSRHVGKYIGGMWRDKAV---SAWEAgvKYPDSKIFPLSLNShpELVAGYLQAEATAA 316 Rivularia sp...
Q4KAP7          244 --RQACFAQGLSVGQVVMMIHTGSRDVGFYVGRRWMDKAK---ALWPAgiKHPDSKIFALF--G--EMADEYLLAMHSAA 314 Pseudomonas ...
CBJ79627        235 --RHAAYAAGLHEGEVLMMIHTGSRDVGFYIGQRWVDKAR---ALWPVtaKYPSSGLFGLTD----EHAQEYFLAMGCAA 305 Xenorhabdus ...
WP_012207445    239 --RHAAYRAGLRAGDVVVMIHSGSRDLGFYVGQAWMDRAR---AEWPQgvKHPASGLYGLSG----PLAGEYLQAMGVAA 309 Delftia acid...
CAS:CtCNB1_2374 264 --RHAAYAAGLKKGDVTVMIHTGSRDVGFYVGRRWMDLAR---QQWPQgiKHPQHGLYGLSG----ALAQDYLQAMGVAA 334 Comamonas th...
Q7NY50          249 --RHAAYAAGLAKDDVVFMIHTGSRDVGFYVGKRWMNKAR---AAWPRqmKYPEHGLFGLSG----ALADEYLIAMGTAA 319 Chromobacter...
EFC45815        363 ifEEELKL---SKDACFLMVHSGSRSLGDHILGEHEDKFG-------------NSGLL---FDS--DDAKHYMKCHDNAC 421 Naegleria gr...
2EPG_B          302 NFAFANRQLIAHFVREAF---EKV-GFt--pRdhglrVLYDLAHN--NAKF-EehRgRRVLVHRKGATRAfgpghpevpe 372 Thermus ther...
WP_015177742    342 NYGFINRLLLAELLRLRL---RQVfGDve-aP-----LVYDLPHNitLAE-------GAGWVTRKGACPA---------- 395 Oscillatoria...
WP_015126959    317 NYGFVNRLLLAELLRLRL---REVyGDie-aP-----LVYDLPHNitLPEK------PGSWVTRKGACPA---------- 371 Calothrix sp...
WP_015121855    317 NYGFMNRLLLAELLRLRL---REVyGDve-aP-----LVYDLPHNitLPVEsK----ISRWITRKGACPA---------- 373 Rivularia sp...
Q4KAP7          315 HYADANRALIAEMVRQRT---RQVfGAgieaP-----LIVDVPHN--IVLR-E----EGGNVHRKGATPA---------- 369 Pseudomonas ...
CBJ79627        306 RYAWANRIVLTELVRAAW---KQIfGQdk-sK-----LIVDLSHN--IIFP-E----QGMNLHRKGATPA---------- 359 Xenorhabdus ...
WP_012207445    310 RYAWANRVVLAELVRKDL---EQIvGAad-sR-----LVVDVPHN--VVLQ-Q----GGMNIHRKGATPA---------- 363 Delftia acid...
CAS:CtCNB1_2374 335 RYGWFNRMALAELVRKEL---AGIaASda-sR-----LIVDVPHN--VVMT-E----GEFNVHRKGSTPA---------- 388 Comamonas th...
Q7NY50          320 RYAWANRMALTEMVRSAI---EATlGQsn-sR-----LVVDVPHN--VVLR-E----QGLNIHRKGATPA---------- 373 Chromobacter...
EFC45815        422 RWAKANRALIARKFLTCIngnGKMi--------------LDICHNnvVEKQvE--N-ERVFIHRKGAAPT---------- 474 Naegleria gr...
2EPG_B          373 eyrRVGQPVLVPGDXGRYSYVLAGTE---KAXe-VSFGSSCHGAGRKXSRHQAKKVARERNLVKEL---AERGILVRAAT 445 Thermus ther...
WP_015177742    396 ---HTGQPVIVPGSMGAPSYLLIGKG---NDR---FLRSASHGAGRARSRFDMSRK-GVDKTDSTL---GLIGVDCITLR 462 Oscillatoria...
WP_015126959    372 ---HAEQPVIIPGSMGAYSYLMVGKG---NPT---FCNSASHGAGRIRSRFDLNRR-GASQNEDEL---GLTGVDCITLR 438 Calothrix sp...
WP_015121855    374 ---NLGQPVIIPGSMGAYSYLCVGKG---NHK---FANSASHGAGRLRSRFELSRG-GARETEEEL---GLTGVDCITLR 440 Rivularia sp...
Q4KAP7          370 ---YAGQPLLIPGSMGHDSYLLTGLG---NER---WLRSASHGAGRSMSRSEVV--FKAKKGKAFL---GLQGVECITTK 435 Pseudomonas ...
CBJ79627        360 ---RAGELALIPGSMGDYSYLVLGKG---NED---WLWSCSHGAGRSIRRQAMRNK------VPDLqknSRLPWQCITLK 424 Xenorhabdus ...
WP_012207445    364 ---NEGDFALIPGSMGDASYLVTGLG---AAD---WLWSCSHGAGRRMRRQAVRA-LRPEAHAGRA---GEQGWQCVTLR 430 Delftia acid...
CAS:CtCNB1_2374 389 ---HDGQWALIPGSMGDYSFLVKGLG---HED---WLRSCSHGAGRQVRRQDTRRM------KQPL---VESVWQCITLR 450 Comamonas th...
Q7NY50          374 ---REGELALIPGSMGDFSYVAAGLG---HPD---WLWSCSHGAGRSMRRQAMRRL------ATEV---APGSWQCVTLR 435 Chromobacter...
EFC45815        475 ---DAGY-FCIPGSRGSFSYLVRGREediESQirCNF-SAAHGAGRKWKRSKSVGMAAKENVQSFTv--TDLGSHVICED 547 Naegleria gr...
2EPG_B          446 RATVDEEXPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG 487 Thermus thermophilus HB8
WP_015177742    463 EERRIEEAPAAYKPIQPVIDVQVEAQIVGAVAKLKPVLTFKA 504 Oscillatoria nigro-viridis
WP_015126959    439 SERRIEEAPAAYKPIQSVIDVQVEAEMVGLVARLSPVLTFKV 480 Calothrix sp. PCC 7507
WP_015121855    441 EERRIEEAPAAYKPIDSVIDVQLKAGIVDVVARLSPILTFKA 482 Rivularia sp. PCC 7116
Q4KAP7          436 EERMIEEAPGAYKEIGQVIQSQVEEGTVSVIARFSPILTFKA 477 Pseudomonas protegens Pf-5
CBJ79627        425 SDRLREEAPEAYKPITPVIEIQEQAGLIQPVARVRPWITFKA 466 Xenorhabdus bovienii SS-2004
WP_012207445    431 EERRIEEAPEAYKPIGPVIESQEAAGLIHAAVKLRPWITFKA 472 Delftia acidovorans
CAS:CtCNB1_2374 451 EERLIEEAPSAYKPVGPVLQAQEEAGLIRASVRLKPWLTFKA 492 Comamonas thiooxydans
Q7NY50          436 EERRIEEAPHAYKPVGPVIAAQEEAGLIKAAVRLRPWLTFKA 477 Chromobacterium violaceum
EFC45815        548 KNLLFEEQPAAYKDIDAVISDLVHFGVVEVVAIMRPLITYKM 589 Naegleria gruberi
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