Conserved Protein Domain Family
uS7_Chloroplast

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cd14871: uS7_Chloroplast 
Chloroplast homolog of Ribosomal Protein S7
Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.
Statistics
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PSSM-Id: 271250
Aligned: 20 rows
Threshold Bit Score: 196.343
Created: 16-Dec-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:rRNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Ribosomal protein S7 directly interact with rRNA during the assembly of the small ribosomal subunit.
  • Comment:Ribosomal protein S7 plays a critical role in controlling of rRNA folding.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           ###   #####  ##                                 #        #   
P19458         9 KKLALPDPIYNSRLVNMLTVRILKEGKKHLAQRIIYNAFDIIKqrtGEDAILVFESAIKKVTPLVEVKARRIGGSTYQVP 88  Guillardia theta
YP_778594      9 KRIFKKDPFYNNELIQIIINRIMKKGNKALARKIIYRSLKDIElvtKQDPIKIVEQAVSNVTPFVEIRSRRLGGSTTQIP 88  Bigelowiella na...
Q9TKZ6         9 KRSISSDPVYNSQLIHMMISHILKEGKKALAYRLMYDAMKRIEkttQQDPILVVERAVRNATPTIEVKARRMGGSIYQVP 88  Nephroselmis ol...
P56355         9 KRIVMPDPVYDSRLVELLVRQLMREGKKSLAYRICYESMNRVAdatQQDPLVIVEQAIRNATPLVEVKARRIGGSTYQVP 88  Chlorella vulgaris
YP_277424      9 RVLAQPDPIYNSRLVNLLVIRVLKSGKKSVAQKIVYTALEIIAektNENPILLLEKAVTNVTPQVEVKARRVGGSTYQVP 88  Emiliania huxleyi
YP_002600937   9 KRPVTPDPVYQSRLVSMLANRLLKSGKKALAQKILYQAMEKVSestQKDPLEVLRQAVLQVTPLVEVKSRRVGGSTFQVP 88  Pyramimonas par...
CCO65918       9 KRPVAPDAVYQSRLVSLLVSHLLKAGKKSVASSIFYESMKEIAdttSQDPLEVLRQAVLNITPKVEVKSRRIGGATLQVP 88  Bathycoccus pra...
Q9TLV7         9 TYRLVSDPFYESPLVTLLIMHVLRNGKKSISQRIVYSAIENIAmkvKEDPLEIIERAIKNVIPAVEIRSRRIGGSTYQVP 88  Cyanidium calda...
P49495         9 KRFPEADSTYNSYLVSLLITRILKSGKKNLAQNIVNAAFEIIKvktNEDPLVVFERAIRNASPVVEVKARRIGGSTYQVP 88  Odontella sinensis
YP_002600824   7 SQRITADPIYRSRLVDMLINRLMFGGKRSVASRIVYDAMEQIQeqeETQPLTVLEDAVRNTTPLVEVKSRRVGGSTYQVP 86  Pycnococcus pro...
Feature 1             ##  #   #      #       ##  #                                   
P19458        89 MEVRaFRGTNLALRWITKYARERa--GKSMSMKLANEIMDAANEtGSSIRKREEIHRMAEANKAFAHY 154 Guillardia theta
YP_778594     89 VFINnERGVTLAIRWLFQASKNKagnKYSIIKRLSSEIVNASNGmGEAIKKRDEMHRMAEANKTIVKY 156 Bigelowiella natans
Q9TKZ6        89 LEVKpERGTALALRWILLAARNRt--GRDMVAKLSNELMDASNRiGNAVRKRDEMHRMAEANKAFAHI 154 Nephroselmis olivacea
P56355        89 LEVAsERGTALAIRWILSVCRKKt--GRPMAAKLTAELLDAAKNsGLAVRKRDEIHKMADANKAFAKY 154 Chlorella vulgaris
YP_277424     89 IEIRaYRGTNISLKWLIEFARERs--GRGMASKLANEIIDAAKNaGGSIRRKEQTHKMAEANKAFAHF 154 Emiliania huxleyi
YP_002600937  89 LEVNtERGTTLGLRWLVDAARNRp--GREMVSKLANEIIDASNQtGNATRKREETHRMAEANKAFAQF 154 Pyramimonas parkeae
CCO65918      89 MEVKsDRGTALALRWLLTASRARs--GRSMVKKLSAEIIDASNNtGGAIRKREDTHRMAEANKAFAHF 154 Bathycoccus prasinos
Q9TLV7        89 TEVRvHRGISLSIRWVIKFAKIRp--GKSMSLKLANELLDASKNlGNSIRKKEDTHKMAEANRAFAHY 154 Cyanidium caldarium
P49495        89 VEVSgFRATNLSLRWIIQYSRQRv--GRTMSIKLANEIIDTANDiGNTIKKKEETHKMQMPIKHLHIF 154 Odontella sinensis
YP_002600824  87 REVEpMRGTSLALRWIINSARSRs--GRGMSMKLAQELVDASKNaGKAVQKRQETHKMAEANRAFAHF 152 Pycnococcus provasolii

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