Conserved Protein Domain Family
LodA_like_1

?
cd14731: LodA_like_1 
Uncharacterized proteins similar to L-lysine epsilon-oxidase from Marinomonas mediterranea.
L-lysine epsilon-oxidase is responsible for oxidative deamination of L-lysine, producing L-2-aminoadipate-6-semialdehyde. Hydrogen peroxide is a side-product of this enzymatic reaction, which requires the cofactor CTQ (cysteine tryptophylquinone). CTQ most likely forms a Schiff base with the free amino acid substrate. The protein is known for its broad-spectrum antibacterial activity; the latter is most likely caused by hydrogen peroxide synthesis. Although members of this related family share features of the active site, their functions are not known. Homologs of LodA have been detected in various gram-negative bacteria, and they appear to be associated with the formation of biofilms.
Statistics
?
PSSM-Id: 269831
Aligned: 37 rows
Threshold Bit Score: 657.376
Created: 18-Sep-2013
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative active
Feature 1: putative active site [active site], 5 residue positions
Conserved feature residue pattern:x H D C xClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the binding of substrate to L-lysine epsilon-oxidase from Marinomonas mediterranea

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
YP_004312754  45 DAKIHRLGIYPTIGICRVGG-------SDQYFLAPEVPGLPPmp--------eGGFKDGTQAIKKQAQRFRIYAFDDQDr 109 Marinomonas med...
NP_947813     37 GAKIAKVAIFPAIGFSRVGN-------AEDWFLAPEVPGLLDep--------eGGFKDKQGRIKKQVQRFRLFGYDDQG- 100 Rhodopseudomona...
WP_018391330  36 DQKVARLAIYPPLGICRVGS-------SAEFFYAPEVPGLPAla--------dGRYKDGRDKLKKQAQRFRVYAFNAAGe 100 Xanthobacteraceae
WP_007674963  47 GAKIARVAIYPAVGICRVGG-------SPKWFLAPELPGVPPkp--------eGGFKDGTDRIKKQAQRFRIYAYDDQDr 111 alpha proteobac...
WP_007094121   2 ANTTPKFRIYPSIGIARLGNgp---atKEEVIFSPEIPWANLye-------tdQNYLTRDGRLKKQAQRFYIYECDDHGn 71  Kordia algicida
WP_006041012  36 DQTIQSLRIYPAIGLARVGG-------STKSFLSPEIPGIPPhd--------nDNYKEGNSLIKKQVQRFRIYAFNKDNq 100 Synechococcus s...
YP_004572461   1 MTEIVRCVIHPGIGIARVGNa------PTEYYVGPEAPGQVPap--------tGGFKDAAGRIKRQAARFRVYGLDKDGa 66  Microlunatus ph...
CCA79550       5 KTDVAWLRVYPPLGIARVGNadpgtveAPAFVIGPEIVGGPCtkpdgsparrvDDFRTADGMIRRQAARFRLYAGLKNG- 83  blood disease b...
WP_009488618   5 ASDVEWVGVYPPIGIARVGNap----gVDDYTLAPETIGGLPda--------rGGYQTANGAIKRQAARFRLYAKLRSG- 71  Microvirga sp. ...
WP_007093693   3 TKEISSVAIYPPIGIARIGN-------SNKHFFAPDIPGVEItp--------kGGYKDKKGRVKKQVARFRIYAFDKNGk 67  Kordia algicida
Feature 1                                                                                        
YP_004312754 110 VIGEITEH-NATIEWNVHLANTKAAWYGFNNPLDNGELApgipgqkr-----nqyfvsdeERERMLVINGGERSIS---- 179 Marinomonas med...
NP_947813    101 RVVRELDG-TDGVTWSVHVANTKAAWYGFVNAMDRGDTApgvpgaqr------nafvaadKREAMLCIDAGKLEIS---- 169 Rhodopseudomona...
WP_018391330 101 VLREVTAQ-EATIEWSVHVANTKGAWYGFNNPLDNGELApglpggqr-----nqaitdwgQRAKMLVIDPGPHAIA---- 170 Xanthobacteraceae
WP_007674963 112 VVGELTSK-EATVSWRVHVANTKAAWYGFNNPLDNGAVApglpgqqr-----nryftspaDRERMLVIDPGPVEIS---- 181 alpha proteobac...
WP_007094121  72 PTRQINTD-DFDIEWSVEVANKKPFWYDFNNSLDLSVVLedhqnlspnfakdklapgisaSYRNPNVLNQELRTEGgydy 150 Kordia algicida
WP_006041012 101 VIKEITGE-DAEIEWSVHLANSKASWYEFHNPLDNGDLApgipgakr-----npeiqgnqEREKQLIVDGGEISIN---- 170 Synechococcus s...
YP_004572461  67 VVREVTAD-VGEVAWRVHLANRKAAWYQFLNAMDLGSKYalvaprr--------nagitgAARKKLIIDPGSRSIT---- 133 Microlunatus ph...
CCA79550      84 SVVELTSD-DCTITWTVSIANLKAGWYEFNQAMDLPRGLaqnaqrr--------naklrrTHRECLDITPAPRVIS---- 150 blood disease b...
WP_009488618  72 GFAELTAGeGVSIEWRVEVANLKAGWYQFKQAMDLPPPFaksaqw----------rnadhRPRADLDIRPVRRVIG---- 137 Microvirga sp. ...
WP_007093693  68 VLGEITETkDHNIQWRVQVANVKSAWYEFNNALDIPNAGipsay-----------rnsdvSDRTQLAITPTPVSIS---- 132 Kordia algicida
Feature 1                                                                                        
YP_004312754 180 -------GINQNg-DTENDTYq-fVGQFWNe------------------eTVKLGKIKTDEhGRLIVIPPDGVSNSp-tN 231 Marinomonas med...
NP_947813    170 -------GASTNpkGGDDKYRm--KGRFWQt------------------lDVSLGHLRTDDkGRLLVFAADGVSRTalpQ 222 Rhodopseudomona...
WP_018391330 171 -------GRGLNl-AGDDPAYa-mVGAFWGr------------------eRVRLASLGTDTqGRLVVFPGDGVAKSaipN 223 Xanthobacteraceae
WP_007674963 182 -------GSKVNw-DGDQGNYa-mVGRFWDs------------------tDVGLGQLRTDDsGRLIVVPSDGKSGSp-qN 233 alpha proteobac...
WP_007094121 151 rkdlvnhPKMVS--VGENAKRkeiKGQFPSsrmsesefsmlakrmnvdekEVNLGTVEYDDdGTLIFYGADGISAAlnpS 228 Kordia algicida
WP_006041012 171 -------GINTNlaGGESKYQa--QGVFQSk------------------tKVFLGELRTDEkGRLLVYPGDGKSLSp-sG 222 Synechococcus s...
YP_004572461 134 -------GRSIK--GTAYRFD---SGQFMGt-------------------KVRLGEVRTDNlGRLLVLGGFGASASy-lD 181 Microlunatus ph...
CCA79550     151 -------GRNQG--GSDFAFD---DGAFWGk-------------------SVYLGELRTDPkGRLTFIGGKGVSAPfrkG 199 blood disease b...
WP_009488618 138 -------GTNLS--GPAYRFD---DGQFLGs-------------------FVPLGELRTDEaGRLLFLGGSGVSASfppG 186 Microvirga sp. ...
WP_007093693 133 -------GKNEK--GKKYDFD---DGEFFGk-------------------KVKLGHVETDEdGRLLFFGGDGKSASk-dD 180 Kordia algicida
Feature 1                                                                                        
YP_004312754 232 AAITSFADNDGWHDDWCDGPVQATVKLPDGt-----FMEADTAWVACIGPNFAPEIPPVTTLYDVISNMNAEQGWTPPVq 306 Marinomonas med...
NP_947813    223 NPVRDFTNNDGWHDDWADGWVKATVTVDGQ------KLDCDPAWVVCCGPKFAPQLEPIVTLYDAAREAMVALGQMHSPt 296 Rhodopseudomona...
WP_018391330 224 NPITNFSDNDGWCDDWCDGPVEARVTFADGh-----SLEAENAWVASCGPDFAPEIPPFVSLYDVMRDVAFDAGWLPETa 298 Xanthobacteraceae
WP_007674963 234 APITSFADNDGWYDDWCDGPVDATVTLTDGr-----VLKADGAWVACVGPNFAPEIPPISTLYDVIASMHWEQGWQSIPd 308 alpha proteobac...
WP_007094121 229 DLNTDFADNSNWYDDICDGRVTATIRKRDSgeeyklDDAQSSAWVASAPPDYAPQIQPLSTMFDLITGAANESHIPELA- 307 Kordia algicida
WP_006041012 223 AKITSFADNADWIDDWCDGPVKATVRLKNSs----lALKADSAWVACAGPNFAPEIPPIVTLKDVIENLNVQNGWESKPq 298 Synechococcus s...
YP_004572461 182 QPATTFANNDGWHDDTSDGTVRATVKIGTK------TFEAEPAVVVVTPPNYGQGLYGVVTMYDVVYDLFCRTPAFGFKp 255 Microlunatus ph...
CCA79550     200 YNPTTFANNNGWHDDIADGPVHATAEFADG------RLDAVPGYVVTTPPNFAPGLQGLVTMDDAVRETFYDQDWLPRPe 273 blood disease b...
WP_009488618 187 MRPTTFANNDRWHDDLADGPVRARVTIGGT------TFEAEPGYVVVTPPNYAPGLSGLVTMDDTVRETFMAQGWLPRPt 260 Microvirga sp. ...
WP_007093693 181 KPAITFANNQGWHDDTCDGVVRATVNIAGK------KFEAEAANVAVTPPNFGPGLYGVVTMNDVVQDLFIREMDYPDSa 254 Kordia algicida
Feature 1                                                                                        
YP_004312754 307 a-pISFRKHIYPIFRRLGLMEW-------------VSSAANLRQGWLGVGNFsDPAYIKQLAd--pSPANQAFRQDIFTK 370 Marinomonas med...
NP_947813    297 d-kVSFRRDVLPILRRAGAMQW-------------VATASFLGAAWNDIGDLsNPATIETLAk--pSADAKAERKKVFDA 360 Rhodopseudomona...
WP_018391330 299 a-pYSFRRDIYPFFRALALMQW-------------VAAAGAMARQYVEVGDFsDPAYISRLAd--pSPEQAALRASVFAA 362 Xanthobacteraceae
WP_007674963 309 g-pISFRKHVYPTFRRTALMEW-------------VSAAAHLQEAWLDTGNFaSEDYIARLAd--pSAENAALRQAVFAK 372 alpha proteobac...
WP_007094121 308 ---TVFPMMYRLYRMQWVNLGDflapsfketidelIAKDEFKYIYKKEPKAE-ADAVREKIFnmfrNPAYNMSNEPIIPS 383 Kordia algicida
WP_006041012 299 --lVSFRQDIYPILRRLDLMKW-------------VTQAALLRSAWIDLGPLsDPVYLKKLAs--kNSKFQKLRQSIFSK 361 Synechococcus s...
YP_004572461 256 pakPSFWRHIYPMLERLVGSGW-------------VNGGADMLFGPGSPSHLtTPDLLAKLAd--pGSASKALRTAYAGW 320 Microlunatus ph...
CCA79550     274 --dTSFTQDVWPIFDRLTGMQW-------------VDHGLFMIHGAGSPLDArAPGVIAKLGn--aSADNGAWRQRVFGL 336 blood disease b...
WP_009488618 261 --eTNFSADVWPIFERLTRLQW-------------INHGLFVAHGIGSPLNAaSPEVVTRLAd--aSAENRPWRERVFAL 323 Microvirga sp. ...
WP_007093693 255 adgVVFYEHIYPMLQRMTDTQW-------------VNQGFFMLFGKNSPSDFnNLEFVKKLAd--pSEANKELRYRVFEW 319 Kordia algicida
Feature 1                                        #                                               
YP_004312754 371 FRNPNn-vSDTAYld----erLKMPMMLGDGINYd----gSPLQWFQFPHQQYQFLEYWAAGNFTNDFEDdkad------ 435 Marinomonas med...
NP_947813    361 FRKPDg--SDQRG--------YAIPIMLGDGVNYq----dSPHAWLALTQTQYRVLELWADGKFEADYADksad------ 420 Rhodopseudomona...
WP_018391330 363 FRDPNk-dLTVEPkq-----qFKLPFMLGDGVNYa----gSPLRWFRIPVRQYALLKAWAEGDFIADLDPdape------ 426 Xanthobacteraceae
WP_007674963 373 FRNPDnlgDEAYKee-----hLKIPLMTGDGINHd----gSALQWFQFPKLQYEFLKRWAAGDFVNDLADaald------ 437 alpha proteobac...
WP_007094121 384 KNKTDl-vNRGSGta-----eLKLPYYPGDAIDYp----gSPAQWFAIPPMIYEQLRQWRDGNFYSPPSFdfkdmdemga 453 Kordia algicida
WP_006041012 362 IRQPVn-sEQSSQkmasdgnaKQLPWMLGDGVNYk----eSPLFMLRITDLQAQKLKQWADGNFVEDYLDeede------ 430 Synechococcus s...
YP_004572461 321 FRDPAgawGKQQP--------VKLPPFYGDAFGNyr---nLGADDLAVTPTQYGWLKRWAAGDFDPDPASrtr------- 382 Microlunatus ph...
CCA79550     337 FRDPD---QQNGGfv-----eEALPQIFGDAYGEgdrdhpDPLNYLSVTRTQYGHLRNWAQGHFKADWDGlpq------- 401 blood disease b...
WP_009488618 324 FRAPGp--LGPAPl-------LQLPYIYGDLYGEsg---eAVLTLLSVTMTMHEHLRRWKEGDFASDWAGppi------- 384 Microvirga sp. ...
WP_007093693 320 FRDPNs--NNYEP--------QKVPPFYGDGFGEye---kIAIVDLPITQTQYARLKCWAKGDFTTGKPKky-------- 378 Kordia algicida
Feature 1                                         #                                              
YP_004312754 436 ---aihtIEDVDLKLQPDALTEAALEPCSGGAFHPGVELTYYLRIPSMYARNYDNAadpfr------------------- 493 Marinomonas med...
NP_947813    421 ---svrtLDDLPIELRPEAMTRAALDACSGGAFHPGVEITWPIRHKELYRGPNETKlpfrl------------------- 478 Rhodopseudomona...
WP_018391330 427 ---pvigFEQIPLAQQPEALTRAALAPCSGGAFHPGVELTWVLRHKELFRGPFRIArsd--------------------- 482 Xanthobacteraceae
WP_007674963 438 ---gveaLEQLPVAMQPAALTEAALEPCSGGAFHPGVELSYYLRLPPLYRRSADPTaepfr------------------- 495 alpha proteobac...
WP_007094121 454 fyrdmflKSATDEKRKPLLMTRAVLETLYGGGFHPGVELTWPMRHKQLYSENNETYqfivddgnlkigayglrevrlnaa 533 Kordia algicida
WP_006041012 431 ---iissFEDIPLDQQPQALTDAVLESCSGGGFHPGVELTYNLRHATLYQKYYNSKiepyr------------------- 488 Synechococcus s...
YP_004572461 383 ----patLAGYPVANQPRALDEANLESCLGGPFHPGIELTWPLRVASMWNAPFRLKll---------------------- 436 Microlunatus ph...
CCA79550     402 ----ppaFDALTPAQQVAHLERAALHDCLGGPFHPGIELTWTMRLPKVWASAYRLHil---------------------- 455 blood disease b...
WP_009488618 385 ----pvdFAGHTPEGQVAQLTRAGLSECLGGPFHPGIEISWPLRRPELWALHHRPEiaergly---------------rl 445 Microvirga sp. ...
WP_007093693 379 -----ipFDELSPAEQIDALNQAPMEECLGGPFHPGIELTWPMRVKQMWKKPYRLNvv---------------------- 431 Kordia algicida
Feature 1                                                                     #   #  #           
YP_004312754 494 lahrkRDKLVQNIGRLLtlek-----aekgDPALGTSPPLAHQw---AGDLTRWMGLPWQCDAFSCQQVLMQE---DFPT 562 Marinomonas med...
NP_947813    479 -alsnRKNLAQDVGLQLnpvnv----fagnPDKLDQGRPIGPQa---PGDLTRWMGVPWQGDAFSCQAVLTAS---GFPT 547 Rhodopseudomona...
WP_018391330 483 ---trDPRLIQNLGLLLtp---------ekAFAGYGDTPAAVApq-mPGDLTRWMGLPWQCDAFSCQQVLFSH---DFVN 546 Xanthobacteraceae
WP_007674963 496 margdRTSLLQDVGRILdyt-------aatQPSGDNTVPIGPQm---PGDLTRWMGLPWQPDAFSCQHVAMQD---AFPI 562 alpha proteobac...
WP_007094121 534 skeeqKEIFYNDFGFSMtsd--------dvRNSMKPDSETAWFwkvtPGDMTKWMGIPWQSDAGSCQAVYVEE---QYPV 602 Kordia algicida
WP_006041012 489 ialgnRSSLIQDLGPELtpk--------ilLTTNLTESPIGKQm---PGDLTRWMGIPWQCDAFSCQSVDFEE---DFPT 554 Synechococcus s...
YP_004572461 437 ---aeGKEPTMDYGVTLt-----------pAEALGAAGVVSSTa---PGTLTWWLGVPWQTDEASCLAGYEIGt--YLPL 497 Microlunatus ph...
CCA79550     456 ---pgTDPAPQDYGDTLt------------PDVCMTQAYNGVA----AGSLTRFMGVPWQTDGTSCNSDADYEpssYLSM 516 blood disease b...
WP_009488618 446 nliaeGEAVRQDFGATLt-----------pEVCLGPDGATGAAg---PGALTRWLGVPWQTDEASCNSSADYEpstFLSM 511 Microvirga sp. ...
WP_007093693 432 ---deGEATDLDFGPLLspaivlgksklqdENGNEKAGPLSKSg---PGALTRWLGVPWQTDEASCLSGYDLTl--YLPL 503 Kordia algicida
Feature 1                                                                                        
YP_004312754 563 AVWWPALLPIDVLPEENYTQLm-----dESLDDSERVKFYENRADWkrgv--agiGYHANASYWDGITNMItLWERMG-F 634 Marinomonas med...
NP_947813    548 PVWWPALLPVDVLPEAFYQQMm-----rTDLTEEERLRFYHTRVPWarga--agiGLHVEAGYTDGLRRMIeLWTQMG-V 619 Rhodopseudomona...
WP_018391330 547 ATWWPALLPIDVLPEINYHGVi-----nKDLPLEERIKMFGARVAWarga--agiGYHANASYTDGLNRMIyLWERMG-V 618 Xanthobacteraceae
WP_007674963 563 PVWWPALLPVDVLPEEFYRQLm-----rDDLSDEARVKFFENRVWWargv--pgiGYHANASYWDGITNMItIWQEMG-F 634 alpha proteobac...
WP_007094121 603 PSWWAANLPVFVLPSDSYEKLk-----dPNILPSTKRNIYANRLAWlhtadtgfiGYHAEGGYMNGLINMVyQWKDIG-V 676 Kordia algicida
WP_006041012 555 ATWWPALLPIDVLPEEFYLRAi-----dTSLSEDERFMYANQRVRWsrsv--agvGYHANQSYWDGLENIItLWQRLGfV 627 Synechococcus s...
YP_004572461 498 PSFWAARVPNQVLSERSYERAl-----dTGLPTTQRLKHLFRRLDW---------LRFFGPANSKRLNDNIaRWHQLG-I 562 Microlunatus ph...
CCA79550     517 PTFWGPRVPDQVFALSDYQRAas---ldPAKQGLQATKHFALRSDWl--------RDVRGRDYYDRLVNMInDWQLLG-M 584 blood disease b...
WP_009488618 512 PSFWGARVPEQVLSSESWTRVtevpatpGNAAFLQRLKHAFHREDWl--------RDVRGRTYFERIDNMVrLWATLG-V 582 Microvirga sp. ...
WP_007093693 504 PSFWAARVPNQVLSEDSYERSik----eGNLNIAQRLKHFDYRQDW---------LRDLGSVYQTKINHMIsEWHELG-I 569 Kordia algicida
Feature 1                                     
YP_004312754 635 VVKRKGpkgagtgGLSAVPKEMYVEVGRG 663 Marinomonas mediterranea MMB-1
NP_947813    620 VVRRPGp-----kGLPGVPDQLYVEVQRG 643 Rhodopseudomonas palustris CGA009
WP_018391330 619 VVSRPGptd--egRPQGIPETLFVEVDRG 645 Xanthobacteraceae
WP_007674963 635 VVKRPGppd--gaRPQGIPREVYVEVDRG 661 alpha proteobacterium BAL199
WP_007094121 677 VTGRRLe-----eDIDGIPNLVYVAYDSK 700 Kordia algicida
WP_006041012 628 IRKPPAakdqskkLNPVLTGDFFVEVSRG 656 Synechococcus sp. WH 7805
YP_004572461 563 VAPRPGpa---dlAAEGIPDTLWVETALD 588 Microlunatus phosphovorus NM-1
CCA79550     585 VLPVPA-------PPPHLPADTRAEMGRV 606 blood disease bacterium R229
WP_009488618 583 LEPRPTpd---wlVQTGFPTEVHLETGRD 608 Microvirga sp. WSM3557
WP_007093693 570 IAKAEDdak--nnEQGFLPDLVWKETGRK 596 Kordia algicida

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap