1L1L


Conserved Protein Domain Family
RTPR

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TIGR02505: RTPR 
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ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]
Statistics
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PSSM-Id: 274169
Aligned: 5 rows
Threshold Bit Score: 982.872
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1L1L_A    16 KASVKPHWGKLGWVTYKRTYARWLPEkGRSENWDETVKRVVEGNINLDPRLQDSPslelk---qsltEEAERLYKLIYGL 92  Lactobacillus leich...
O64240     1 MTEGEIPWGPTGELVYNRTYSRVKPD-GTRETWPETVERVVSGNLALVDSRYQLP------------GEREDLLRLMREF 67  Mycobacterium phage...
Q59490    16 KASVKPHWGKLGWVTYKRTYARWLPEkGRSENWDETVKRVVEGNINLDPRLQDSPslelk---qsltEEAERLYKLIYGL 92  Lactobacillus leich...
CAF22835   1 MTKPTARAMATALRTYHRPVK---EGdTQLENWDQVVERVISHQRWLWERALGRTlne------aqeDELEEIRSLISNR 71  Candidatus Protochl...
CAE20968  27 LTSSRPEIAMTALEASGQRGDFPATApAANPVFYRTYSRRTSSGRESWNEVSTRNlqglqqlgklraEEVALMSRMQAEK 106 Prochlorococcus mar...
1L1L_A    93 GATPSGRNLWISGtdyqRRTGDS--LNNCWFVAIRPQkygdskivpsylgkqekavsmPFSFLFDELMKGGGVGFSVARS 170 Lactobacillus leich...
O64240    68 KILPAGRHLWASG----VKNAQH--LFNCWVSGWTEKps------------------dHFEFTFMRLMEGGGVGANYSNR 123 Mycobacterium phage...
Q59490    93 GATPSGRNLWISGtdyqRRTGDS--LNNCWFVAIRPQkygdskivpsylgkqekavsmPFSFLFDELMKGGGVGFSVARS 170 Lactobacillus leich...
CAF22835  72 QIAPAGRTLWLGGtelsRTRESS--MFNCSYTHVETVy--------------------DVVDVLWLLLQGCGVGFRPITG 129 Candidatus Protochl...
CAE20968 107 KALPSGRWLWIGGtdwiERAENFsgAYNCTSTNLVDWe--------------------AFGLMMDLAMMGCGTGAVIEPH 166 Prochlorococcus mar...
1L1L_A   171 NISQIPRVDFAIDLQLVVDETSESYDASVKVGAVGKNELVQDADsiyyrLPDTREGWVLANALLIDLHFAQTNPDRKQkl 250 Lactobacillus leich...
O64240   124 FLADYPHVKQELEVHIVCDEDHDDYADLAEAGQLSSRYDSDWVDaf--vIEDSREGWAAALVDLIDTHYRDDVAHKER-- 199 Mycobacterium phage...
Q59490   171 NISQIPRVDFAIDLQLVVDETSESYDASVKVGAVGKNELVQDADsiyyrLPDTREGWVLANALLIDLHFAQTNPDRKQkl 250 Lactobacillus leich...
CAF22835 130 TLNGFRRPLQEIKVIRSNRTEKGGIQNNVETYDPETHIWTIKVG-------DSAIAWAKAVGKLVAGKFPAQTl------ 196 Candidatus Protochl...
CAE20968 167 LIDQLPVVRNPIKIVGVTDIGLTAAHQRQEQTTHSIENDNVLIK-----VGDTRRGWVDSYQLLLELCSDERFAGRTInv 241 Prochlorococcus mar...
1L1L_A   251 ILDLSDIRPYGAEIHGFGGTASgPMPLISMLLDVNEVLN----------NKAGGRLTAVDAADICNLIGKAVVAGNVRRS 320 Lactobacillus leich...
O64240   200 VYDVSRVRAAGRKLKTFGGTASgPVPLAKMLTEVSEILSrcaregeqyrFEDGGALTGLDAMEIDHAIAQCVVAGGVRRS 279 Mycobacterium phage...
Q59490   251 ILDLSDIRPYGAEIHGFGGTASgPMPLISMLLDVNEVLN----------NKAGGRLTAVDAADICNLIGKAVVAGNVRRS 320 Lactobacillus leich...
CAF22835 197 VLDFSEIRPAGTRLKGYGWISSgDEQIAKAFKAIAKILS----------DRSDQLLTRMDILDIVNWLGTILSS---RRS 263 Candidatus Protochl...
CAE20968 242 SIDLSDVRPVGETLKGFGGMAN-PVKLKDLYTRVARLLG----------KAVGRRLTSVECCLLIDEAAVTIVAGNIRRS 310 Prochlorococcus mar...
1L1L_A   321 AELALGSND----------------------DQDFISMKQDQEKLMHHrWASNNSVAVDS-------------AFSGYQP 365 Lactobacillus leich...
O64240   280 ARMAMMHWA----------------------DWQVETFTNIKQDSGSH-WTTNISVEVDD-------------AFWSLAK 323 Mycobacterium phage...
Q59490   321 AELALGSND----------------------DQDFISMKQDQEKLMHHrWASNNSVAVDS-------------AFSGYQP 365 Lactobacillus leich...
CAF22835 264 AQIALFEYD----------------------QPEWEDFAIAKK----EwWIKGNAHRQQS-------------NNSLLFR 304 Candidatus Protochl...
CAE20968 311 AGMRQFSAEdlaaaeakenlwqqdaegnwriDPEKDALRMANHTRVYHnRPSRSIVVEAVrkqfhsgegaiqfAPEAIAR 390 Prochlorococcus mar...
1L1L_A   366 IAAGIRENGEPGIVNLDLSKNYGRIVDG---------YQAGIDGD---VEGTNPCGEISLANGEpCNLFEVFPLIAEEQ- 432 Lactobacillus leich...
O64240   324 APVDPLNPRSTKAHRVLKALSEGAVRNGepgmwdsslSNVGEPNE---VVCTNPCGEITLEPWEpCNLGHINLAAFVTDa 400 Mycobacterium phage...
Q59490   366 IAAGIRENGEPGIVNLDLSKNYGRIVDG---------YQAGIDGD---VEGTNPCGEISLANGEpCNLFEVFPLIAEEQg 433 Lactobacillus leich...
CAF22835 305 SKPNREELERVFQLMLDSGGSEPGIINAa--------EAERRAPW---FKGCNPCVEILLGNKSfCNLTEVNVLAFRGDk 373 Candidatus Protochl...
CAE20968 391 SNADLLTTQELRQEFIGIYCDQGKDEAGrwlqtnhgpIDASELEHrlgRYGLNPCGEILGADFH-CNLAEIHLNQIDPCd 469 Prochlorococcus mar...
1L1L_A   433 G----WDLQEVFALAARYAKRVTFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLgnrvvtgfkddfdpethEAIKVP 508 Lactobacillus leich...
O64240   401 GktdyIDLIRAHRLMTRFLIRATFSAVADPKSREVLDRNRRIGVGHLGVASYLALTG-----------------RRYSQA 463 Mycobacterium phage...
Q59490   434 -----WDLQEVFALAARYAKRVTFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLgnrvvtgfkddfdpethEAIKVP 508 Lactobacillus leich...
CAF22835 374 -----VGLERALYLAGRMNYRQTMVNLRDEILQEAWHLN----------NDFLHLCGv----------------GLTGVR 422 Candidatus Protochl...
CAE20968 470 E----DGQADAFKAAALSVACLLNHRFEVPRYRQSRAWDPIVGVSFTGLFDFFVHAFgtawlrw----wengrpDTDEGR 541 Prochlorococcus mar...
1L1L_A   509 VYDKRAIKMVDQLYKAVVKADQDYSKTLGCNESIKHTTVKPSGTVAKLAG------ASEGMHFHYGAYLIQRIRFQDSDP 582 Lactobacillus leich...
O64240   464 PGDKRFTAFLREMAAEVDRAAEEFSHELRIPVPVKKRTVAPTGTIAKMPG------VSEGIHPIFSRYFIRRIRFSVLDN 537 Mycobacterium phage...
Q59490   509 VYDKRAIKMVDQLYKAVVKADQDYSKTLGCNESIKHTTVKPSGTVAKLAG------ASEGMHFHYGAYLIQRIRFQDSDP 582 Lactobacillus leich...
CAF22835 423 ARPDLTAYDFKRMRNITVSAAYSMANELNSPLPKNVTCIKPSGTISKIMGteewgeVPEGIHMPLGKYLFNNITYSKHDP 502 Candidatus Protochl...
CAE20968 542 QFKQKEASFLIRWKKIVNETVWDYCDRHELRRPSRCTTVQPAGTKSLLTG------AAPGWHPPKAQRFIRRITFRKNDP 615 Prochlorococcus mar...
1L1L_A   583 ----LLPALKACGYRTEADIYTEN---------------TTCVEFPIKAVGADNPNFASAG--TVSIAEQFATQAFLQTY 641 Lactobacillus leich...
O64240   538 dqflTASQYAADGYHVEKDQYDKSgntwvv----eiptkDTLVEAVAARFGRDAEDIVESAn-ELTLHQLLAFQALYQTC 612 Mycobacterium phage...
Q59490   583 ----LLPALKACGYRTEADIYTEN---------------TTCVEFPIKAVGADNPNFASAG--TVSIAEQFATQAFLQTY 641 Lactobacillus leich...
CAF22835 503 ----LVTKFRAAGYTVIEKPYEPEsvlvk------fpvkFENVPFTRTTVTRKNGKIEEVEinTDSAVAQLELYSILQTT 572 Candidatus Protochl...
CAE20968 616 ----VAMACMDYGYTVVPSQSDKDeqgrllddpfdprcsEWLVEIPTEVSWANLPGADAVNinNFSALAQFDFYMQVQSH 691 Prochlorococcus mar...
1L1L_A   642 WSDNAVSCTITFQDSEGDQVESLLRQYR-------FITKSTSLLPYFGGSLQQAPKEPIDKETYEKrsqeitgnv---ee 711 Lactobacillus leich...
O64240   613 WADNAVSFTANVDPDAYEGVDVAADLQR-------FSGLIKGSTIFPEESFPQAPYERITKQQYEA-------------- 671 Mycobacterium phage...
Q59490   642 WSDNAVSCTITFQDSEGDQVESLLRQYR-------FITKSTSLLPYFGGSLQQAPKEPIDKETYEKrsqeitgnv---ee 711 Lactobacillus leich...
CAF22835 573 WCEQNVSNTISYDPSEVPAIIDWFMKNWdcyvgvsFLFRNDPTKNAEDLGYAYLPQEVVTKEAYETycakl--------- 643 Candidatus Protochl...
CAE20968 692 YTAHNTSATIELREDEIESLGEALHQAIdns-egyISAALLARFDAHNATFPRLPFEPIDANTFERlqaevvnrrvrsnf 770 Prochlorococcus mar...
1L1L_A   712 vfsqlnSDVKDLELVDQTDCEGGACPIK 739 Lactobacillus leichmannii
O64240   672 ------AAIKAVADGVDEECANGACPIK 693 Mycobacterium phage D29
Q59490   712 vfsqlnSDVKDLELVDQTDCEGGACPIK 739 Lactobacillus leichmannii
CAF22835 644 -sdidySGIHIRDDDLAEACANGACPIR 670 Candidatus Protochlamydia amoebophila UWE25
CAE20968 771 fealhsYDQGELMEAGPAGCDSDKCLLP 798 Prochlorococcus marinus str. MIT 9313
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