Conserved Protein Domain Family
Helicase_C_4

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pfam13871: Helicase_C_4 (this model, PSSM-Id:404712 is obsolete and has been replaced by 464009)
C-terminal domain on Strawberry notch homolog
Strawberry notch proteins carry DExD/H-box groups upstream of this domain. The function of this domain is not known. These proteins promote the expression of diverse targets, potentially through interactions with transcriptional activator or repressor complexes.
Statistics
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PSSM-Id: 404712
Aligned: 62 rows
Threshold Bit Score: 318.736
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EFN59171         1297 NFLDQLVDELGGPQRVAEMTGRKARVVRDGR-GRGVYTLRARpDSSE----MDSLNIREKQEFMEGRKLVAIVSDAASTG 1371 Chlorella...
EFN55772         1216 NPLDHLIELLGGEQHVAELTGRKGFVSKDEGsGRAMYVQRGG--DGP----QKDVNMREKEAFMEGRKLVAIISDAASTG 1289 Chlorella...
jgi:OSTLU_30868   920 NPLDNLIALCGGHEHVAEMTGRKLHQVRQEN-GKIMTRKRMD---DTdaanAKLMNMTEKRKFQQGEKLIAIISDAASTG 995  Ostreococ...
XP_002507411      633 NPLDHLVDLCGGPSKVAEMTGRERRLVRCLEtGNVEAKLRRS----QldttQKLLNMAERESFQSGEKLIAIISEAASTG 708  Micromona...
XP_005851135      919 NPLDTLIDQLGGPAKVAEMTGRKGRLVRSKSsGGVVYEPRNA-SGVSagatLEMINVHERELFLGGQKLIAIISEAASAG 997  Chlorella...
F4IF36            782 NPLDDIVDQLGGPEKVAEMTGRRGMLVRASNgKGVTYQARNT-KDIT----MEMVNMHEKQLFMDGKKLVAIISEAGSAG 856  thale cress
jgi:Cha6605_6267  925 gLLDQINWHF-GHHQVAEITGRSQRIILED--GRYQLAQRPG-----------ASNLAETAAFQSGEKRVLIFSAAGGTG 990  Chamaesip...
WP_013041612      893 SALDEIIAHF-GTAQVAEVTGRSKRLVRDRD-GRQRLETRSA-----------RSNLGETAAFTDGSKRILVFSDAGGTG 959  Sphingobi...
BAK66631          853 tALDALIAHF-GTDRVAEITGRSRRIVTDVT-GKQKIERRGA-----------RANVLEVQAFQNGTKPIAAFSLAGSTG 919  Sphingobi...
CCA93072          901 aALDALLAHF-GSEQVAEVTGRTRRIVLDPR-GNQKLEPRGA-----------GARKADSDDFMAGRKPILAFSDAGGTG 967  Novosphin...
EFN59171         1372 ISLHASAASRNQR-RRVHLTIELPWSADKAIQQLGRSHRSNQASAPIYKLVFTSVGGERRFAAAVARRLQSLGALTRGDR 1450 Chlorella...
EFN55772         1290 ISLQADRRVGNQR-RRCHITLELPWSADKAVQQFGRSHRANQVSAPLYRILTVPVGGEYRFASAAAKRLASLGALLRGDR 1368 Chlorella...
jgi:OSTLU_30868   996 ISLQADKRVQNQR-RRCHMTLELPWSADKAIQQFGRSHRSNQSSAPLYRILMTPCGGERRFASSAAKRLLSLGALLKGDR 1074 Ostreococ...
XP_002507411      709 VSLQADKRVKNQR-RRCHMTLELPWSADKAIQQFGRSHRSNQSSAPLYQILVTPCGGERRFASAAAKRLQSLGALLKGDR 787  Micromona...
XP_005851135      998 ISLHADLRAANQR-RRVHLTLELPWSADKAIQQFGRTHRANQAHGPQYRLIFTPLGGERRFAAAVARRLESLGALTQGDR 1076 Chlorella...
F4IF36            857 VSLQADRRAVNQK-RRVHLTLELPWSADRAIQQFGRTHRSNQTSAPEYRLLFTNLGGERRFASIVAKRLETLGALTQGDR 935  thale cress
jgi:Cha6605_6267  991 RSYHADLACANQQ-LRRHYLVEAGFEPIVACQGVGRSHRSNQAQPPEIVLLTSDVKGELRFTATIASRLSSLGAITKGQR 1069 Chamaesip...
WP_013041612      960 RSYHADRDSRSAGyRRIHFLLEPGWRAAEAIQGLGRSNRTNQASAPVFRPCTTNCRGERRFISTIARRLDSLGAITRGQR 1039 Sphingobi...
BAK66631          920 RSMHSDRNCPTAHrRRAHFLLELGFRILSAVQGFGRSHRTNQMTAPVYRPLTTDCRGERRFLSTIIRGLEALGALTRGQR 999  Sphingobi...
CCA93072          968 RSYHADLGCGSASkRRIHFLLEPGWKAATAIQGLGRTHRTNQASPPVFRPVTTDCKGERRFISTIARRLDSLGALTRGQR 1047 Novosphin...
EFN59171         1451 RA-ASGLDLSELNFDSPLGRKSLRKMYD--FLV-----LESPLLPP------------------GVslgpileglpaeev 1504 Chlorella...
EFN55772         1369 NAiGAGSELKGFDIDNAHGEKALLRVLQdvCGEhgskpMPGVKVPElppelaeseflhtsgmde---------------- 1432 Chlorella...
jgi:OSTLU_30868  1075 RAlGAGQSLQAFDIDNAYGSEALKRMIS--DLKrdtdpMPTVQYTEaqlda----------------------------- 1123 Ostreococ...
XP_002507411      788 RAlGAGVDLRAFDIDTKEGSAALNRLYDd-AREknsgpMPNVNVPGgdfkr----------------------------- 837  Micromona...
XP_005851135     1077 RA---GPSLSAFNYESVWGQRALREMYR--AIMlesrsLLALPQPCrpgpsgeapplslgvflgKA-------------- 1137 Chlorella...
F4IF36            936 RAgPSGPSLSAYNYDSNFGKKSLMVMYR--GIMeq-ekLPVLPPGCsidepet-----vkefltKA-------------- 993  thale cress
jgi:Cha6605_6267 1070 NTgNNGLFRGILDFTSPYAKSALAEFFA--DMNaq--gIDGISPTEfae------------------------------- 1114 Chamaesip...
WP_013041612     1040 QTgGQNMFDPADNLESEYALEALRQWYQ--MLHag--kLQSVSLGDfcr------------------------------- 1084 Sphingobi...
BAK66631         1000 QTgSQNLFDPSDNLESDFARDALTQWFH--LLYeg--kLRSVSLDAfqe------------------------------- 1044 Sphingobi...
CCA93072         1048 QTgGQNLFDPADNLESDYAREALTQWYH--LLHag--kLASTSLADfea------------------------------- 1092 Novosphin...
EFN59171         1505 egflpvpedgrvtaaamvaaiqrlharlRACVDLM--G--IGLAsprgdtv--------aedtaaAGAAGGK-----EVG 1567 Chlorella...
EFN55772         1433 -----------lmersgreatppffkymRTKLLSI--GvlEEGGe-------------------gTGRILvps--akAKV 1478 Chlorella...
jgi:OSTLU_30868  1124 -----------------------iiniiRGELVKV--GlaDEDNg-------------------dGRFTLKGnktknSGL 1159 Ostreococ...
XP_002507411      838 -----------------------farfaRRCLVSV--GmgHANRak------------------gNAWELPkk--feG-- 870  Micromona...
XP_005851135     1138 ----------------------------RALLLNV--GiiRHNKavvsashineylsrpdgapssVGRIDEK-----DMA 1182 Chlorella...
F4IF36            994 ----------------------------RAALVAV--GivRDSVlangk-----------dvgrfSGRIIDS-----DMH 1027 thale cress
jgi:Cha6605_6267 1115 --------------------------ytGLKLLNKd-GnlS--------------------------D---------NLP 1132 Chamaesip...
WP_013041612     1085 --------------------------mtALKLVDKdsGelV--------------------------E---------NLP 1103 Sphingobi...
BAK66631         1045 --------------------------mtGLELCDEg-GelL--------------------------E---------RLP 1062 Sphingobi...
CCA93072         1093 --------------------------mtGLKLAEEqgGglL--------------------------E---------RLP 1111 Novosphin...
EFN59171         1568 DVRRFLNRLLGLAVWRQNLLFNYFQATLGAEIRAAKAEGKYFEGVSD 1614 Chlorella variabilis
EFN55772         1479 KIPRFLNRLLGLPMVDQELLFQYFQDTLDATVAQLKSEGKFDSGIVT 1525 Chlorella variabilis
jgi:OSTLU_30868  1160 KISTFLNRLLGMPIEMQEIAFDYFTQTFEGVIKDHKQRGKYDSGVTn 1206 Ostreococcus lucimarinus CCE9901
XP_002507411      871 KVPLFLNRLMGLSVDQQKLLFAYFTETHEAEVAEAKARGTFDEGVVs 917  Micromonas commoda
XP_005851135     1183 DVPRFLNRLLGLEPVAQQTIFDFYQVTLEALMDKARREGALDEGIVD 1229 Chlorella variabilis
F4IF36           1028 DVGRFLNRLLGLPPDIQNRLFELFTSILDVLVHNARIEGSFDSGIVD 1074 thale cress
jgi:Cha6605_6267 1133 QMNTFLNRLLALKIDLQNRLFADFEQRILERIAQAKANGTFERGVQt 1179 Chamaesiphon minutus PCC 6605
WP_013041612     1104 PIQRWLNRLLALRISVQDAIFTEYLALIEARVEAAREAGTLDVGVET 1150 Sphingobium japonicum
BAK66631         1063 PIHRWLNRILALRIATQNSIFEEFLGLIEDRVEAARTAGTLDLGIET 1109 Sphingobium sp. SYK-6
CCA93072         1112 PIQRWLNRILALRIATQNAIFEEYIGLIQARVDAAREAGTLDLGVET 1158 Novosphingobium sp. PP1Y
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