Conserved Protein Domain Family
YddA

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COG4178: YddA (this model, PSSM-Id:226646 is obsolete and has been replaced by 443337)
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Statistics
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PSSM-Id: 226646
Aligned: 25 rows
Threshold Bit Score: 447.142
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6325110   13 SLLLNLHTHCIGLHVNDvTpKVYFKLLIRHLLQISRSnAAHPKLRRRAQILLVSLFLsgVTLFSgvtySTFKIILKCYKf 92  baker's yeast
17989321   6 QISQQALQARER----------SAVSRMTSFWGLLRA-YWVSDRWKEAWALTAAIFL--ITAFI----SKTTVWVAEAS- 67  Brucella melitensis
1175812   13 WILTALFWVVLCFS-VTmL-ALKQTTFGKKFWCIVSP-SMDKKTSIKLILMLLVLFI--MILLE----VRFSVLNSFFY- 82  Haemophilus influenzae
15828127  22 WIAKAWAISAACVV-VLvM-LSFITRWGRQYWRITRG-YFIGPQSVGVWLMLAVLLF--SVVIS----VRLNVLFSYQS- 91  Mycobacterium leprae
2492589   22 WVGKAWTISAICVLAILvL-LRYLTPWGRQFWRITRA-YFVGPNSVRVWLMLGVLLL--SVVLA----VRLNVLFSYQG- 92  Mycobacterium tuber...
2492589   22 WVGKAWTISAICVLAILvL-LRYLTPWGRQFWRITRA-YFVGPNSVRVWLMLGVLLL--SVVLA----VRLNVLFSYQG- 92  Mycobacterium tuber...
15678005     --------------------------------------------------------------------------------     Neisseria meningiti...
17230142   1 ---------------------MFFIKMLRQFSRIGKL-YWLSEKKWQAIALLFLLLC--LSLIG----TVVTVVLSLFL- 51  Nostoc sp. PCC 7120
17230155   1 ------------------M-NLGNPQIWQQFWQIIQP-YWLYRWRGDAIAQLIMLVI--LSLGS----SYFIIFEILQR- 53  Nostoc sp. PCC 7120
13470735   6 RRSQESVPDRLHRGPAGrS-HLTPVSSMRSFWGLMKA-YWFSERWKEAWTLTVVIAL--LTALS----SKAGVWFALAL- 76  Mesorhizobium loti
6325110   93 ykfpwkrrnrrpliRRtrsqmqldsgarimyipevelvdrqspddnkfmnatdkkkrkrifippkdndvyehdkflfknv 172 baker's yeast
17989321  68 --------------GH---------------------------------------------------------------- 69  Brucella melitensis
1175812   83 --------------NG---------------------------------------------------------------- 84  Haemophilus influenzae
15828127  92 --------------KD---------------------------------------------------------------- 93  Mycobacterium leprae
2492589   93 --------------ND---------------------------------------------------------------- 94  Mycobacterium tuber...
2492589   93 --------------ND---------------------------------------------------------------- 94  Mycobacterium tuber...
15678005     --------------------------------------------------------------------------------     Neisseria meningiti...
17230142  52 --------------GE---------------------------------------------------------------- 53  Nostoc sp. PCC 7120
17230155  54 --------------GE---------------------------------------------------------------- 55  Nostoc sp. PCC 7120
13470735  77 --------------GE---------------------------------------------------------------- 78  Mesorhizobium loti
6325110  173 eleraknsqlfYSKFLNQMNVlskili--ptvfdkNFLLLTAQIFFLVMRTWLSLFVAkldgqivkniiagrgrsflwdl 250 baker's yeast
17989321  70 -----------LMNSIVNVNT--------------APVQSPLAAVVTNAGVLIILILAkdvl------------------ 106 Brucella melitensis
1175812   85 -----------LYSSMQELNI--------------EKFWFFAKLNALLVVAQVIHAIA---------------------- 117 Haemophilus influenzae
15828127  94 -----------LYNALQAAFEgagaqndlvkqsgmHGFWMSLGIFSILAVIFIARVMA---------------------- 140 Mycobacterium leprae
2492589   95 -----------MYTALQKAFEgiasgdgtvkrsgvRGFWMSIGVFSVMAVLHVTRVMA---------------------- 141 Mycobacterium tuber...
2492589   95 -----------MYTALQKAFEgiasgdgtvkrsgvRGFWMSIGVFSVMAVLHVTRVMA---------------------- 141 Mycobacterium tuber...
15678005     --------------------------------------------------------------------------------     Neisseria meningiti...
17230142  54 -----------LESSLAAVDS--------------NRFIQAVVIFLGILLIGVPILAL---------------------- 86  Nostoc sp. PCC 7120
17230155  56 -----------ITSSLAAQNF--------------NRFYQTFWFFSGVVIINVIFISL---------------------- 88  Nostoc sp. PCC 7120
13470735  79 -----------LGNSIAFFHD--------------AANTSPLQAILTNAGILVLLVVLkdag------------------ 115 Mesorhizobium loti
6325110  251 gcwfliavpasytnsaIKLLQRKLSLNFRVNLTRYIHDMYLDKRlTFYKLIFDAk--aSNSVIKNIDNSITNDVAKFCD- 327 baker's yeast
17989321 107 ------------lvgfRHLLSTTLHRKWRKWLNDSFSDALLDRN-HTHFHLQQGn---GAHLPDNVDQRVQESIKGMTG- 169 Brucella melitensis
1175812  118 ----------------DYFFQQVFEIRWLESFNATLVKRWLNKK-KYYRLKYER------DLPDNIDQRIEQDAREFIT- 173 Haemophilus influenzae
15828127 141 ----------------DIYLTQRFIIAWRMWLTNHLTTDWLDQR-AYYREQFID------NTIDNPDQRIQQDIDIFTAg 197 Mycobacterium leprae
2492589  142 ----------------DIYLTQRFIIAWRVWLTHHLTQDWLDGR-AYYRDLFID------ETIDNPDQRIQQDVDIFTAg 198 Mycobacterium tuber...
2492589  142 ----------------DIYLTQRFIIAWRVWLTHHLTQDWLDGR-AYYRDLFID------ETIDNPDQRIQQDVDIFTAg 198 Mycobacterium tuber...
15678005     --------------------------------------------------------------------------------     Neisseria meningiti...
17230142  87 ----------------KTYLQAQLSLSWRQWLTTYFLNKYLHQR-NFYHLTTT-------SDIDNPDQRIAEDIQNFTQ- 141 Nostoc sp. PCC 7120
17230155  89 ----------------KNYIQAQISLDWRKWLTSDYFQQYFAKQ-SFYQLQVN-------AEIDNPDQRLAEDIKNVTQ- 143 Nostoc sp. PCC 7120
13470735 116 ------------ftgvRGLVSATLHRKWRGWLNSQFNKALLDGN-HTHFHAQHGsaagGIVAPDNIDQRIQESIKDMTG- 181 Mesorhizobium loti
6325110  328 -----------ATCSVFANIAKPVIDLIFFSVYLRDNLG-T--------VGVAGIFVN----YFITGFILR--KYTPPLG 381 baker's yeast
17989321 170 -----------GAIGLVMGIVGVVLSAFFVGQKLLEISTeVhgleflgsYGGALLALAvillYVPLGTLIAi-KIGKRLE 237 Brucella melitensis
1175812  174 -----------STVQIVRGVINSVLTTIEFTIILWSLSGvLtl----fgFNIEKGVVFfiyaFIIFATLMSv-WIGRPLI 237 Haemophilus influenzae
15828127 198 aggtpngpsngTGSTLLFGAVESVISVISFTAILWNLSGrLav----feFEIPRAMFWivivYVLLATIITf-WIGRPLI 272 Mycobacterium leprae
2492589  199 aggtpnapsngTASTLLFGAVQSIISVISFTAILWNLSGtLni----fgVSIPRAMFWtvlvYVFVATVISf-IIGRPLI 273 Mycobacterium tuber...
2492589  199 aggtpnapsngTASTLLFGAVQSIISVISFTAILWNLSGtLni----fgVSIPRAMFWtvlvYVFVATVISf-IIGRPLI 273 Mycobacterium tuber...
15678005     --------------------------------------------------------------------------------     Neisseria meningiti...
17230142 142 -----------QSLYFAIVLLDSILQLIAFSGVLW---------------RIAPTLMVfliiYAVVGTVFTtiVFGKTLV 195 Nostoc sp. PCC 7120
17230155 144 -----------RLVALFVIFLDSLVQLIGFIGVLW---------------LISPFLMYslvtYAVVGTLVTtlVFGKVLV 197 Nostoc sp. PCC 7120
13470735 182 -----------GAIGLAMGVLGVATSLYFIGENLIGSSVeVkgleflggYGSAVLAFLavaiYVPLNTWIAv-KLGRLLE 249 Mesorhizobium loti
6325110  382 KLAGERSASDGDYYNYHLNMINNSEEIAFYQGTAVERTKVKELYDVLMEkmllvdkvkfGYNMLEDYVLKYTWSGLGYVF 461 baker's yeast
17989321 238 RLNLGMQKAEGSYRGEWTTLLRRSFQISASEGENVQRTVNNRLYREVDG----------TWDKLNRFDAAYLAFSQAYGF 307 Brucella melitensis
1175812  238 KLNFTKEKLNGDYRYSLIRVRDNAESIAFYNGEPKEQTFLQHQFRQIIH----------NRWSIVLKMLGLNSFNSGVTR 307 Haemophilus influenzae
15828127 273 GLNFANEKLNAAFRYALVRLRDAAEAVAFYRGEEAERKQLEQRFTPIID----------NYRRYVSRTIRFLGWNASVSQ 342 Mycobacterium leprae
2492589  274 WLSFRNEKLNAAFRYALVRLRDAAEAVGFYRGERVEGTQLQRRFTPVID----------NYRRYVRRSIAFNGWNLSVSQ 343 Mycobacterium tuber...
2492589  274 WLSFRNEKLNAAFRYALVRLRDAAEAVGFYRGERVEGTQLQRRFTPVID----------NYRRYVRRSIAFNGWNLSVSQ 343 Mycobacterium tuber...
15678005     --------------------------------------------------------------------------------     Neisseria meningiti...
17230142 196 GINFEQLKREADLRYGLIRVGDNAEAIAFYQGQAVESQEIWQRFLRVVS----------NFTHLIRWQLGLDLFQNSYQY 265 Nostoc sp. PCC 7120
17230155 198 GINLEQIKREADFRYGLVRVRENAEAIAFYNGQTQESQQLKQRFSQVFA----------NIKRLISWQFRLNVFQNGYQF 267 Nostoc sp. PCC 7120
13470735 250 RLNIRMQQAEGSYRSELTTFLRRSFHVAASHGEDVQKSMHDKLYVDIDK----------TWGKLNVVNNGYTSFELIYNF 319 Mesorhizobium loti
6325110  462 ASIpIVMSTLATGInseeknmkeFIVNKRLMLSLADAGSRLMHSIKDISQLTGYTNRIFTLLSVLHRVHSLNFnygavpS 541 baker's yeast
17989321 308 LSLrIVAYIPGFLP---------YMSGAVNFRNYVTGAELVAAMINDCSWFIQVMPAIANLRANAGRVIGLAQ------S 372 Brucella melitensis
1175812  308 VAK-LLPLMLQAPR---------FFSGQIKLGDMHQTVQAFNRLMTALSFFRLFYEQFTLYQARLNRLYGFIT------K 371 Haemophilus influenzae
15828127 343 TIV-PLPWILQAPR---------LFAGKINLGDVGQTATAFGNIHDSLSFFRNNYAAFAAFRAAIIRLHGLVV------A 406 Mycobacterium leprae
2492589  344 TIV-PLPWVIQAPR---------LFAGQIDFGDVGQTATSFGNIHDSLSFFRNNYDAFASFRAAIIRLHGLVD------A 407 Mycobacterium tuber...
2492589  344 TIV-PLPWVIQAPR---------LFAGQIDFGDVGQTATSFGNIHDSLSFFRNNYDAFASFRAAIIRLHGLVD------A 407 Mycobacterium tuber...
15678005     --------------------------------------------------------------------------------     Neisseria meningiti...
17230142 266 ITF-LLPTFILAPR---------ILAGELEIGVSAQAGVAFRSILLALGLIISQFEQLSNLAAAVTRLDELYN------L 329 Nostoc sp. PCC 7120
17230155 268 LTF-ILPFLILAPR---------IFSRELEIGAVTQSQAAFERVGLALGLIITQFNQITTLAAGVERLSELG-------- 329 Nostoc sp. PCC 7120
13470735 320 LGArIVAYGPGLVS---------FIHNRLDYKGYITGSEMVAQLISQCSWFIHVMPAIATLRANSQRVTELAN------A 384 Mesorhizobium loti
6325110  542 ILSIRTEDASRNSNLlPTTDNSQDAiRgtiqrnfNGIRLENIDVIIPSVRasegiKLINKLTFQIPlhidpitsksnsiq 621 baker's yeast
17989321 373 IESVQEPAEFYARSGvNRFAFTHQHpR-------FGLSVRNLTLMQGPASe---tPFLRSGVINMR-------------- 428 Brucella melitensis
1175812  372 MDELD-KQNVHHPFH-------C---S-------HRVALKNFGIKDEQGH-----VLLNNLNINLE-------------- 414 Haemophilus influenzae
15828127 407 NARSRELPHVTAKST-------N---D-------GTVHVVAVEVRTSAGE-----QLIDPLDLQLN-------------- 450 Mycobacterium leprae
2492589  408 NEKGRALPAVLTRPS-------D---D-------ESVELNDIEVRTPAGD-----RLIDPLDVRLD-------------- 451 Mycobacterium tuber...
2492589  408 NEKGRALPAVLTRPS-------D---D-------ESVELNDIEVRTPAGD-----RLIDPLDVRLD-------------- 451 Mycobacterium tuber...
15678005   1 ---------------------------------------------------------MSGININLK-------------- 9   Neisseria meningiti...
17230142 330 I----EKLENPINLNqEQYIILNRLaD-------SYISFQNVTLHTPDYQk----ILVKDLSFTVS-------------- 380 Nostoc sp. PCC 7120
17230155 330 -----K------AMQtEAQGKIKFAeN-------TEINIKNLTLEIPE-Rg----NLIQDISLSVK-------------- 372 Nostoc sp. PCC 7120
13470735 385 IENVQHPQAFYSQTGqSDFHYASQNpV-------FGLTIQKLELAHQGEDa---tPFLSAANLRFR-------------- 440 Mesorhizobium loti
6325110  622 dlskandiklpflqgSGSSLLILGPNGCGKSSIQRIIAEIWPVYNknGLLSIP-SENNIFFIPQKPYFSRGgTLRDQIIY 700 baker's yeast
17989321 429 ---------------AGDWIYMRGESGSGKTSFIKALNGLWPYGT--GNIIYP-QGANSLYVPQEAKFPSV-SLKQLVAL 489 Brucella melitensis
1175812  415 ---------------NGDALLIQGASGTGKTSLLKAIAGIYPFET--IG-IAEhPCMGSLFLPQRPYMPQG-TLREAICY 475 Haemophilus influenzae
15828127 451 ---------------CGSSLVITGRSGVGKTTMLRSLAELWPYAS--GTLSRPdGKNETMFLSQLPYVPLG-NLRGVVCY 512 Mycobacterium leprae
2492589  452 ---------------RGGSLVITGRSGAGKTTLLRSLAELWPYAS--GTLHRPgGENETMFLSQLPYVPLG-TLRDVVCY 513 Mycobacterium tuber...
2492589  452 ---------------RGGSLVITGRSGAGKTTLLRSLAELWPYAS--GTLHRPgGENETMFLSQLPYVPLG-TLRDVVCY 513 Mycobacterium tuber...
15678005  10 ---------------NGDSLLIRGPSGCGKTSLLRALAGLWPFGS--SGKVSRpPHQDILFLPQRPYTAQG-SLRDAVCY 71  Neisseria meningiti...
17230142 381 ---------------PGESLLITGKSGVGKTSVLRALAGLWQSGT--GKITYPkSH--LLFLPQRPYMILG-SLREQLLY 440 Nostoc sp. PCC 7120
17230155 373 ---------------PGESLIIVGESGVGKTSLLRAIAGLWLHGE--GIIERPaNDS-LLFLPQRPYITWG-SLRQQLTY 433 Nostoc sp. PCC 7120
13470735 441 ---------------RGEWTFLKGESGCGKTSLIKAINGLWPYGR--GTIVFP-DGVKSFYAAQEVKLQQV-SLKQLVCL 501 Mesorhizobium loti
6325110  701 PMSSDeffdRgFRDKELVQILVEVKLDYLLKRgvgltyLDAIAD----WKDLLSGGEKQRVNFARIMFHKPLYVVLDEAT 776 baker's yeast
17989321 490 PRDEG----D-FNDLAVAAVLHEAGLGEFIER------MKDADAgnspWDMVLSGGQKQKVMLARILLHKPSIIFLDEAT 558 Brucella melitensis
1175812  476 PNIN-------PSHAELEQTMKDCALGKYIHA------LNVKND----WQAILSPGELQRVAFIRILLTKPDVVFLDETT 538 Haemophilus influenzae
15828127 513 PNAP-----AdIPEDTVRDTLTKVALNPLCDR------LDEERD----WAKILSPGEQQRIAFARILLTKPKAIFLDEST 577 Mycobacterium leprae
2492589  514 PNSA-----AaIPDATLRDTLTKVALAPLCDR------LDEERD----WAKVLSPGEQQRVAFARILLTKPKAVFLDEST 578 Mycobacterium tuber...
2492589  514 PNSA-----AaIPDATLRDTLTKVALAPLCDR------LDEERD----WAKVLSPGEQQRVAFARILLTKPKAVFLDEST 578 Mycobacterium tuber...
15678005  72 PDID-------KQHPELAEAMNTCRLGYLVDK------LDKTDD----WQHKLSPGELQRVAFVRALLSKPKIVLLDEAT 134 Neisseria meningiti...
17230142 441 PQNNR----S-ISDDELLQVLQQVNLTDLIER------FNGLDSit-dWERVLSVGEQQRLAFARLLIQSPQYAILDEAT 508 Nostoc sp. PCC 7120
17230155 434 PQTTT----N-IPSEILLKTLQQVHLPDLAQS------HGGLDTvi-dWSRVLSLGEQQRLAFARLLLIQPKYAILDEST 501 Nostoc sp. PCC 7120
13470735 502 PGSEH----D-HGDAQVASALHKAGLGDFIEH------MANESRegksWDQVLSGGQKQKLVVARIILQQPGLLFLDEAT 570 Mesorhizobium loti
6325110  777 NAISVDMEDYLFNLLKR--YRFNFISISQRPTLIKYHEM---LLEIGENRDGkwqlQAVGTDEAITSI 839 baker's yeast
17989321 559 GALDPASKLRFHTALKTrcPDAIVVSIMHEEKLPTLESGesiFSHVLDIANG----YVSLIPAHFAAA 622 Brucella melitensis
1175812  539 SALDETTENLLYQTIKErlPEMIILSVGHRSTLQQFHNK---QLKLDVCLLC----EN---------- 589 Haemophilus influenzae
15828127 578 SALDEGLEFALYQMLRSelPDCIIVSVSHRRAVELLHAQ---QLELLGGGQW----RLGPVEKEPLHV 638 Mycobacterium leprae
2492589  579 SALDTGLEFALYQLLRSelPDCIVISVSHRPALERLHEN---QLELLGGGQW----RLAPVEAAPAEV 639 Mycobacterium tuberculosis
2492589  579 SALDTGLEFALYQLLRSelPDCIVISVSHRPALERLHEN---QLELLGGGQW----RLAPVEAAPAEV 639 Mycobacterium tuberculosis
15678005 135 AALDEPTEALLYRALKQklPDSIIISIGHRSTLNAFHNM---RLDVGNVACG---------------- 183 Neisseria meningitidis MC58
17230142 509 SALDETNQTQLYQQLQT--TQITYISVGHRSSLRPFHHH---ILELIKPprpfa-------------- 557 Nostoc sp. PCC 7120
17230155 502 SALDEETEASLYQQLQQ--TSITYISVGHRNTLLNYHQM---VLELAQQNWQ----LLPIDNFCFAQR 560 Nostoc sp. PCC 7120
13470735 571 GALDPEGKIAFHQAIKDncPDVTVISVMHEAVAPRSAAGtefYHSIVLIADG----VATKKPLTPTLP 634 Mesorhizobium loti
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