Conserved Protein Domain Family
CCDC66

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pfam15236: CCDC66 (this model, PSSM-Id:405833 is obsolete and has been replaced by 434558)
Coiled-coil domain-containing protein 66
This protein family, named Coiled-coil domain-containing protein 66 (CCDC) refers to a protein domain found in eukaryotes, and is approximately 160 amino acids in length. CCDC66 protein is detected mainly in the inner segments of photoreceptors in many vertebrates including mice and humans. It has been found in dogs, that a mutation in the CCDC66 gene causes generalized progressive retinal atrophy (gPRA). This shows that the protein encoded for by this gene is vital for healthy vision and guards against photoreceptor cell degeneration. The structure of CCDC66 proteins includes a heptad repeat pattern which contains at least one coiled-coil domain. There are at least two or more alpha-helices which form a cable-like structure.
Statistics
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PSSM-Id: 405833
Aligned: 14 rows
Threshold Bit Score: 115.677
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q29DB3               414 LKDGSEDDVQSMQSSS-----------TYLRGQNAPLDAQTLAERMDKRRKASEYHNAIKKQLHEREMIRKWELERHRQE 482  Drosop...
EGI68942             238 vlvinhDSASSPDSSTtgstgsdinkvSYLRGQNIPMDAEILQEREMKRQKALELQNAIKQQLEEKDRQRKEEKERRLRE 317  Panama...
KMZ00840             447 LKD-SEDDVQSMQSSS-----------TYLRGQNAPLDAHTLAERMDKRRKAAEYHNAIKKQLHERELIRKWEQERHRQE 514  Drosop...
WGS:AAQB:GK12267-PB  374 ggkdSEDDIQSLQSSS-----------TYLRGQNAPLDAHTLQERIDKRRRAAEYHNAIKKQLHERELIRKWELERHRQE 442  Drosop...
XP_001985289         462 LKD-SEDDVQSMQSSS-----------TYLRGQNAPLDAHTLAERMDKRRKASEYHNAIKKQLHERELIRKWELERQRQE 529  Drosop...
XP_002048096         448 LKD-SEDDVQSVQSSS-----------TYLRGQNAPLDAHTLAERMDKRRKAAEYHNAIKKQLHERELIRKWELERHRQE 515  Drosop...
XP_016279203         507 sggqlGSAEENLGKSTqdvattnvektSFLRSMTALLDPAQIEERDRRRQKQIEHQKAITAQVEEKRRKKQLEEQQRKQE 586  gray s...
F1PZQ5               413 GSQVEPSEEEHIAKPVrdmamansqktNFLRSMTALLDPAQIEERDRRRQKQLEHQKAITAQVEEKRRKKQLEEQQRKKE 492  dog
1_pfamImport           3 GSQVGPSEEEHTAKPVrevamtnhqktNFLRSMTALLDPAQIEERDRRRQKQLEHQSLSIEQVYNTKGLKCLNNSLEVLV 82  
XP_012427661         523 LGNLMPLQMGTAEKAAkngaleqsqrvSFLRSMTALLDPAQIEERDRRRQKQLEHQKAIMAQVEEKRKQKQLEEEQRKWE 602  zebra ...
Q29DB3               483 EQIEEERLRRQKQMDQERAEYERRQQLEREEAQQKKQQAMLDAIAKAEVAAQMEKQQKRKKPQPqpqpqpqtvpkdgpqe 562  Drosop...
EGI68942             318 EMLEEERIRRERERDKARFEEEQRIIREKEEAKLRKTQAMREVLEAAERLAKEDGKNRRKRE------------------ 379  Panama...
KMZ00840             515 EQIEEERIRRQKQLEQERLEFERRTLLEREEAQQKKQQVMLDAIQKAEVAAKIEKQKRRMVHQPskvsqeteedd----- 589  Drosop...
WGS:AAQB:GK12267-PB  443 EQMEEDRLRRQKQMEIERLEYERRQALEREEAQKKKQQVMLDAIAKAEVAAQKEKQKKRKNREE---------------- 506  Drosop...
XP_001985289         530 EQLEDQRIRRENLMEQERLDYERRQLLEREEAARKKQQALLDAIAKAELAAKIEKQKKRQKHVPpieqspsqer------ 603  Drosop...
XP_002048096         516 EQLEEERMRRQKQLEQERLEFERRQLQEREEAQKKKQQAMLDAIAQAEMAAKMEKQKKRKNRMP---------------- 579  Drosop...
XP_016279203         587 EDEEERRLAREREEMQRRFEEDLLEQKRKEEMMALKTSELYQSMQRAQELAQRLRQEQRIRELE---------------- 650  gray s...
F1PZQ5               493 EQEEERRLAREREEMQKQYEEDILKQKQKEEIMTLKTNELFQTMQRAQELAQRLKQEQRIRELA---------------- 556  dog
1_pfamImport          83 KGEVVGRLAREREEMQKQYEEDILKQKQKEEIMTFKTSELLQTMQRAQELAQRLKQEQRIRELA---------------- 146 
XP_012427661         603 EQQEELRLAREKAQLQKQFEEEMLKQKQKEELATRKARELYQAMEKAQELAQGSKQDQHIPDLA---------------- 666  zebra ...
Q29DB3               563 gellrvqsveEEEEEA 578  Drosophila pseudoobscura
EGI68942             380 ----------EHTDED 385  Panamanian leafcutter ant
KMZ00840             590 eaelmrvqsvEEEEDA 605  Drosophila simulans
WGS:AAQB:GK12267-PB  507 ----------VKVKTT 512  Drosophila willistoni
XP_001985289         604 pellrvlsveEEEEEQ 619  Drosophila grimshawi
XP_002048096         580 ----------SKEHRQ 585  Drosophila virilis
XP_016279203         651 ----------QKGHDI 656  gray short-tailed opossum
F1PZQ5               557 ----------QKGHDT 562  dog
1_pfamImport         147 ----------EKGHDT 152 
XP_012427661         667 ----------QKAHDI 672  zebra finch
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