Conserved Protein Domain Family
Rbg1

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COG1163: Rbg1 (this model, PSSM-Id:224085 is obsolete and has been replaced by 440777)
Ribosome-interacting GTPase 1 [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 224085
Aligned: 19 rows
Threshold Bit Score: 419.76
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15669516  24 VMGIEEEIRRIEEELKKTPYNKATQKHIGRLKAKLAKLREQAQS-----RGGGGGg-KGYAVKKSGDATAAFVGFPSVGK 97  Methanocaldococcus ...
11499729   3 PMSIEQQIRELEEEIKRTPYNKATEHHIGRLKAKLARLREEAEK-----QKAKAAr-QAFSLKKEGDATAVLIGYPSVGK 76  Archaeoglobus fulgidus
14601806   1 ---MEEKIQALEEFISAVPKHKGTENLLLWARRRLAELREELEEkr--kRRVGGG--PSFFVEKSGAGQAVLIGPPNSGK 73  Aeropyrum pernix
20093139   1 MSSIQEQIQEVEDEIRKTQYNKATSHHIGRLKAKIARMRDEIEK-----KASSKGggEGYSVKKSGDGTVTLVGFPSVGK 75  Methanosarcina acet...
20094635  19 ARSPEEKLRITEEMLAVVPKHKGTENLRALLKRRLAKLREEVEKrr--qQKSGGG--PDYNVKKEGAAQVALVGPPNAGK 94  Methanopyrus kandle...
15679616  16 gMDIEEKIRKIEEEIQKTPYNKATAHHIGKLKAKISRLKEEALQ-----RKTSSGkgRGFHIKKSGDSTVVLIGFPSVGK 90  Methanothermobacter...
14520715  19 AKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKqr--qQRKGGG--YSLAVKKEGAAQIVLVGLPNVGK 94  Pyrococcus abyssi
18312780  19 AKTPEEKIKAMEEFLSTVPKHKGTEKLIKHIRRRMAELKRELNErrekeRALRGGggSRLYVAKEGDIQVAVVGPPSSGK 98  Pyrobaculum aerophilum
15899138  19 AKTPEEKFQALQEFLKEVPKHKGTENLVYWAKRRMAELREEMEVr---kSKKSGG--FSLFVEKEGAGQAILIG-DMLLR 92  Sulfolobus solfatar...
141353     1 -MGLEEDIESLEEEIANTPYNKSTEAHIGRLKAKLAEQKEKLEA-----QQSGSGggGGYAVEQHGDATVALVGFPSVGK 74  Halobacterium sp. N...
15669516  98 STLLNKLTNAKSEVGAYAFTTLTIVPGILEYKGAKIQLLDAPGIIVGASSGKGRGTEVLSAVRSADLILLTVDIYTLDH- 176 Methanocaldococcus ...
11499729  77 STLLNKLTGAKSEVADYDFTTLKPVPGILNYKGASIQIIDVPGIIEGAASGRGRGKEVISAVRVADLIIIVADVFNLHT- 155 Archaeoglobus fulgidus
14601806  74 SSILAALTNAKPEVADYPFTTRMPRAGMLPYEDIQFQIVDTPPLLPGSGSSVN--NRVLGLARNADAIILVFSLD-DPNl 150 Aeropyrum pernix
20093139  76 STLLNKVTGAKSEVGAYEFTTLTVVPGVLEHKGATIQFLDVPGLVKGASSGRGRGKEVISVIRNSDMVIFLLDVFQPKH- 154 Methanosarcina acet...
20094635  95 SALLRELTNADPDVASYPYTTKEPVPGMMEYKDVQIQLVEIPPIYEGFTRGD--GSKFVGVIRNADALCLVVDLTEDPve 172 Methanopyrus kandle...
15679616  91 STLLNELTSAESKVGDYQFTTLEIVPGVMEYRGAQIQIFDIPGIITGASRGRGRGREILSVARSADLIVIVLDVFNTDH- 169 Methanothermobacter...
14520715  95 SELLRALTGVDVESADYPFTTTEPIPAMMNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVIRNADAIAIVIDLSEDPik 174 Pyrococcus abyssi
18312780  99 TSLLCCLSNTTLRPDDLPFSTVEPVPSMFVEDGVYVQLVKTPSLVLDQSSDLN--AIALATVRNADAVILVIGADTDRGa 176 Pyrobaculum aerophilum
15899138  93 SFIMRKLTNVKQEFNELP------VPGMVKYEDVQIQLVNPP---KSLPLSK-----TIGLIRNADEVIIAINNKEDLS- 157 Sulfolobus solfatar...
141353    75 SSLINAMTNADSEVGAYEFTTLNVNPGMLEYRGANIQLLDVPGLIEGAAGGRGGGKEILSVIRGADLVIFVLSAFEIEQ- 153 Halobacterium sp. N...
15669516 177 ---LPVLEKELYNVGIRLDQTPPDVKIKV--KERGGINVSSTVPLTHIDEDTIEAILNEYRIHNADVVIRED-ITLEQFI 250 Methanocaldococcus ...
11499729 156 ---IDIVKRELYEGGIRLDQKPPDVVIRK--KERGGVRISSTVPLS-IDEATITSVLKEYKIHSADVVIRED-ITIERLI 228 Archaeoglobus fulgidus
14601806 151 vetIDAVVREVEDRGIVITRRRGLARIMKs-REVTGVRIEGPGRLTDATEDDVRRLLSQYRIYNAIVYIEGD-VSLDDVE 228 Aeropyrum pernix
20093139 155 ---YEVLMDELYQAGIRVDEVPPDVTIKR--KDRGGIEINSTIDLD-LDEETIKAVLDEYKIHNAHVLIREN-ITVDQLI 227 Methanosarcina acet...
20094635 173 --qLETVLRELESAAIKLNQDPPSITIEE--RVTGGIEIRGEDRL-DCDPNDVKDLLRDAGIHSAVVVIEEDgITLEDIA 247 Methanopyrus kandle...
15679616 170 ---MDIILRELRDVGIRPNETPPDVIVKR--RKLGGVKLSATVELTHLDEKIIRSVLNEYGIHNADVLIRDD-ITVDQFI 243 Methanothermobacter...
14520715 175 --qMKILLREFERAGIKVNKRRPRIEIRR--TPSGGIVINGIENI-KGDINEVMKMLREEKIHSAEITVREP-VTLEDFA 248 Pyrococcus abyssi
18312780 177 ---VERIFQFFEDEGVYLTPLRNYVKIER--RGLGGIQIMGSGRVIGGTLNDVKKILNEYGIYHAVVRIEGE-VTLDEVE 250 Pyrobaculum aerophilum
15899138 158 -----LIKSLLEDNNILLRKPKGRVVIERtrYGISGIRVVNLGKLIGIDEKVVRDYIESFGIKSAIVKIIGE-VTLDDIE 231 Sulfolobus solfatar...
141353   154 ---YDRLAEELYNVNIRVDAEPPSVTVRR--KGKDGIDVNTSGELE-LDSDTVKGILRERGFINANVTIRGN-PSVDRLI 226 Halobacterium sp. N...
15669516 251 DVVAGNRVYIPSLVVVNKIDLAD-EEYLKYIKQKLeef---gkDYILVSGNK-GINLDLLKEKIYEKLGFIKIYLKPQGK 325 Methanocaldococcus ...
11499729 229 DALAGNRVYIPSLTVVNKIDLMD-VDVADAIK---------------VSAEK-GINLDLLKEQIYRKLEFIRVYLKPPGG 291 Archaeoglobus fulgidus
14601806 229 SAVYINLVRKPALAILNKADLPGaREAAEPAVKRLgei---giDTIVASALR-GDGLGEIAPRLFRMLDIVRVYTKQPNK 304 Aeropyrum pernix
20093139 228 DVVLGNRSYVRSLTVVNKVDLAY-PQLIEECRKLYp-------KSIFISAHE-GINIENLKDSIYDCLGFIRVYLKPQGQ 298 Methanosarcina acet...
20094635 248 DALDKRIEYKPALLVANKGDAPGsKESYERLVERVedle-fdlPVVPVSAEK-GINLDEFKRRLYDTLGIIRVYTKKPGG 325 Methanopyrus kandle...
15679616 244 DVMEANRAYIPAITVINKIDLVD-ESYLEGLREKFp-------EALFISADR-DINIDELREEIFNRLGLIRIYLKPQGK 314 Methanothermobacter...
14520715 249 DALDESLVWKKAIIIANKGDAPGsKDNYEKLVKAYge----rfKIIPVSAKK-RINLDAVKEALYDVAEIIRVFTKSPGE 323 Pyrococcus abyssi
18312780 251 EALYLDRIYKPTIAVISKTDLLKpSDSVIDLLSKSg------vRYYLADLKTcSVDKRRLLEDLLKVTGRIRVFTKPIHS 324 Pyrobaculum aerophilum
15899138 232 KSMFEAVSYKPTVVISKDRFDTG---ELPMLT---------------I-----D-QIDKLPKHLFDMLEVIRVYTKEPGE 287 Sulfolobus solfatar...
141353   227 DGVMDNRVYMPSLVTVNKVDLIE-PSYAGTMKDALrdhgvspdDAIFISAAE-EKGLDVLKERMWRALGLIRIYMDKPGR 304 Halobacterium sp. N...
15669516 326 KPDFDEPLIMRRGATVKDVCEKLHKDFVRNFRYAQVWGK-SAKHPGQRVGLDHKLEDGDILTIVIK 390 Methanocaldococcus jannaschii
11499729 292 KVDFSEPMILRRGATVEDICRKLHRDFVENFRYAKVWGK-SVKFDGQRVGLEHVVEDGDIITIYA- 355 Archaeoglobus fulgidus
14601806 305 EPDK-DPLVLHRGSTVMDVAKHIHKDLVRRFKYARVWGK-SVKYPGQRVGPEHVVEDGDIVEIHVR 368 Aeropyrum pernix
20093139 299 PADMEEPLIVMSGTNIGQICDRLHRDFRRKFRYAQVWGP-SAKHPGQRVGLEHIMEDEDILMIIIQ 363 Methanosarcina acetivorans C2A
20094635 326 KPQK-PPIVLPKGATVEDVAREIHSDLAKNLKYARVWGK-SVKKDGMMVGRDHVLEDGDVVELHG- 388 Methanopyrus kandleri AV19
15679616 315 KADYDEPLIIREGSTVGDVCQKLHRDFVRKFRHARVWGS-SVKFDGQKVGLEHVLNDEDVLRIIIK 379 Methanothermobacter thermautotrop...
14520715 324 EPAY-PPIALKRGSTVLDVAERIHKDLVKNFRYARVWGK-SVKFPGQRVGPDHVLEDGDIVEIHAR 387 Pyrococcus abyssi
18312780 325 KTYTPKPIVVKAGSTVGEVAAMIHSSLAETFKYAVVWRReDFPNRPKRVGRDYVLSDNEIVEIHA- 389 Pyrobaculum aerophilum
15899138 288 EPTK-DPLILKKGSTVLDVARKLHSSLAENFRYARVWGK-SVKFQGQKVGPSHILEDRDIVEIHVK 351 Sulfolobus solfataricus
141353   305 GVDREEPLIIRRGETVDDAVQKLGGTLDERFRFARVTGP-SAQHDDQQVGRDHVLEDEDVLRVVAR 369 Halobacterium sp. NRC-1
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