Conserved Protein Domain Family
TRAP_beta

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pfam05753: TRAP_beta 
Translocon-associated protein beta (TRAPB)
This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion.
Statistics
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PSSM-Id: 399046
Aligned: 17 rows
Threshold Bit Score: 168.676
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_001415761  21 CAlv-vVASFANPIVAQDDAdasdappgPARVLVRKRIVEDLVVEGSNVTVAVTLTNAGETEARKVKARD-DGFaNEDDF 98 
EDO33394       4 LAlvlgVLASLGHCAESESS--------SARLIVAKNILNQFAVEGKDLTVHYTIYNVGSSPAFAVTLTE-TAF-DENSF 73 
Q5E9E4         4 LAfa-vLALFA---VTQAEE--------GARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSD-DSF-PPEDF 69  cattle
Q54VI6        13 LF----VSFVYC------EN--------GAELLFHKKIVEGPVV-GKELPIQFIIYNVGSEPAYDISFID-NDF-SNAEF 71  Dictyostelium d...
XP_001581623  12 TKmf-gLSLL----LTQIKS--------APFIVFDKKLSSVSGKVGEPINCYYVIINQGDSTVTDLSIVE-NGI-PSEAW 76 
Q0DLG8        12 LL----LLLVPFAAAAGQDA--------PFVVAQKKVALSRPGPGVERLAVTLNLYNQGSATAYDVSLND-DSW-PQEAF 77  Japanese rice
Q94BY3        13 MA----VFMLVSASFATSEV--------PFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAYDVTLTD-NSW-DKKTF 78  thale cress
Q01GX3        22 IA----IACLALGARASDDDla-----tTARVLARKTIAPAMAVEGQNLTVTVSLVNAGTAEARKVRVRD-DGL-DASAF 90  Ostreococcus tauri
CAP24314       1 MK----LIILVSAFLATVNA--------SARVLVGKEFISMYPVAQQENVFEYQIINIGDTAAINVDFSDrGSF-PTDKF 67 
Q21352         1 MQ----LVFLILSALAAADA--------SAKILIGKSFVTKYPVAQRENAFEYQIINIGLSPALKVELSDlKSF-PTDRF 67  Caenorhabditis ...
XP_001415761  99 ELITGkeSLSATYATIAPGESVEYSFVVVPKKSGSFPGGAVSVSYlgtsgRETTHGSSnVLGATpvYTTMQKNIFAALKV 178
EDO33394      74 KVKHG--LTSIKWKSIVPGTNVSHTLILEPLKSGVFNFTSAMVTY-----KPSEDAPE-QVAFS--TAPGEGGVMSNKDY 143
Q5E9E4        70 GIVSG--MLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTY-----LAQED-GPvVIGFT--SAPGQGGILAQREF 139 cattle
Q54VI6        72 EFVSG--SSEGKWETLAPNSQVQTNLTVIPKKSGIYSLTSTVLNY-----RKTQTSSEfTVSSA--ASYSGMYVESQADY 142 Dictyostelium d...
XP_001581623  77 SFSGD--SSILSWKSLKPGENITHIFPITPTKSGNLQIMPSTMIY--------YDGNEkQKHLS--SMIPFIEIKGSRSI 144
Q0DLG8        78 QLISG--TTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITY-----RVPTK-AAlQEAYS--TPMFPLDILAERPP 147 Japanese rice
Q94BY3        79 EVVNG--NTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTF-----RIPTK-PAlQEAYS--TPLLPLDILADKPP 148 thale cress
Q01GX3        91 ELIGEkdALSATYATLAPGERVEYAYTVVPKTSGSFKASAASVSYlgtsgRETTRGTSnVLGDVlvYTKTQRNIFTALEV 170 Ostreococcus tauri
CAP24314      68 EIVSG--SLDAKYAVIPPHSSVSHHIVVVPRVPHAIEDKDVLVDY-----TDSESKISsRVSTLwfSKGRLTHFFHQDAL 140
Q21352        68 EILKG--SATASFPVIPANSTIYHHIVVIPRVPQAIEDHDVTVNY-----TDSETGKRaRTSTVsyDKRGYTHFFAETAM 140 Caenorhabditis ...
XP_001415761 179 GKYLTLGacrtIEDWVKYGTIIGSVCGA-----LLLNWVALKV------KK 218
EDO33394     144 QRKHSPH----LVDWGLFSLMSIPTMLI-----PFMVWYRSHSkyenikAK 185
Q5E9E4       140 DRRFSPH----FLDWAAFGVMTLPSIGV-----PLLLWYSSKRkyd-tpKT 180 cattle
Q54VI6       143 EKRTSLL----IKEWITFFVLCAGAIAL-----PYSISTYYKKnye-ngIK 183 Dictyostelium discoideum
XP_001581623 145 GARAN------LQGYCLFIVAAASSVLV-----PLLLWWVSRKgvs-ttTK 183
Q0DLG8       148 QQKFELVkt-cGEIWVAGLRCFLCRCVYlpgckPVKIHCCKRKqe--eaLN 195 Japanese rice
Q94BY3       149 TKPLDVAkr-lLAKYGSLVSVISMVVCF-----IYLVATPKSNvsk-asSK 192 thale cress
Q01GX3       171 GKYLTLGacktMEDWVRYGTLFGGVAGA-----LALNWFALKV------KK 210 Ostreococcus tauri
CAP24314     141 KHIAGSK----YAHFFVFAAIATPVTGL-----SALLYWVSKSryt-lpKR 181
Q21352       141 RKVEGVN----CTHFLGFGAIAFPLTAI-----PAILYWISKRrysnkkQD 182 Caenorhabditis elegans
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