Conserved Protein Domain Family
retron_St85_RT

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NF038233: retron_St85_RT 
retron St85 family RNA-directed DNA polymerase
All members of the seed alignment are reverse transcriptases St85-like systems. However, members of this family may include reverse transcriptases from other types of retron system.
Statistics
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PSSM-Id: 468421
Aligned: 115 rows
Threshold Bit Score: -1
Created: 24-Apr-2023
Updated: 3-May-2023
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_119109523      6 VLIADQMKVPVVLVEDALKLAFIRYRKIRVPKRS-G-GYRTIIQPAAELKLVQAWLNEKIFKHLpLSSVATAFRPGASIT 83  Simplicispir...
WP_069717419     18 KDLSLLMNLSEHFLNQLSRNVDYQYKEVKIKKKDg--SKRLLACPTQRLKAVQAWILRNILEKLsCDSSATAYIKGynLK 95  Bacillus sol...
WP_089962284     46 GALPLFLGISPKTIFSIRRRPRKHYRSFPLKKKDg--TKRDIDTPRTYLKVIQWWILDNILNHVeIAENVFGFVAGrsAV 123 Salipiger th...
WP_169734062     32 GSLPLFLGISPKTIFSIRGKPRKHYRSFPIRKKDg--TPRYIDTPRTYLKVIQWWILDNILNHVqIADNVFGFVSGrsAV 109 Ciceribacter...
WP_170125851     22 FDIATVLGIGPKLIVSMLKKPNRHYRTFPLTKKDg--SERQISAPRTYLKVAQWWILDNIVSRVpASENVFGFCRGrsIQ 99  Pelagimonas ...
WP_165193433     46 AHVSSYLGVSPKLVRQILHKPSYHYRFFEIPKSDg--SLRAITTPKTYLKVVQWWICDNILNQMpLHDCVHGFRSGrsYL 123 Pseudohalocy...
WP_116487955     47 EDISYYLGISPELIWTLIRSPRYKYNTFSVRKKSg--GSRVISAPRTYMKVVQWWINDVILSKFpQRDNVFGFVPGvsYV 124 Caulobacter ...
9_ncbifamImport   1 RTFSLLFGVSPRLISAMTKSPEKYWRTFEIKKRSg--KGRNIAAPRVFLKTVQRFLLRFVLEKIpIHPNAFGFAPGKGIF 78 
WP_159436682     25 ASIADYLGFAPQHIFYLVEDPDRCYVSIEIPKNSdPtKLRKLDIPISELKGVQRAINKKILSEFpVDECVHSYVPArsIL 104 Pseudosulfit...
WP_073146368     11 ETLSGFLGFAPQHIYYLVESPESYYTTISIPKKSdPmKVRQIDIPFSELKGVQRAINKKILSELpMSDNVHSYVQGrsIL 90  Litoreibacte...
WP_119109523     84 NNAAIHRNSLYSVRVDIKDFFPSIRSVDLIRIVRS-NrsalppFVMeTGFTNLVRQACFDRegrLPIGYPTSPSIANAVM 162 Simplicispir...
WP_069717419     96 NNAQMHTGSSFFLCLDIKDFFGTIPQKHVYQLFRAlG------YNEhVSIILSNFCCYKGV---LPQGGVTSPILSNLIN 166 Bacillus sol...
WP_089962284    124 QNAKYHLGAKHVLNVDIRQFFPSITIDQVREIFVSlG------YKEdVAEMLAELCCLDDR---VPQGAPTSPAIANLVL 194 Salipiger th...
WP_169734062    110 QNAEFHLGAAHMLNIDIEQFFPSITIDQIRAIYGSlG------YGAeVANLLAELCCLDDR---VPQGAPTSPALANLVL 180 Ciceribacter...
WP_170125851    100 DNARYHLGSTHILNVDIKSFFDSVTFSQVLLVFKElG------YSQpAAKTLAGLCTLNGK---LPQGAPTSPNIANMVL 170 Pelagimonas ...
WP_165193433    124 TNAKAHFGQKHFLNVDIESFFPSIGADLVEATFLEmG------YHSdGASVLRDLVTLGGA---APTGSPTSPMIGNLVL 194 Pseudohalocy...
WP_116487955    125 DNAAYHHGAVTMMNVDIKNFFPSIKSEDVLVCFMKiG------YSKqVALGLSALTTYAGF---LPQGAPTSPNLSNIVF 195 Caulobacter ...
9_ncbifamImport  79 KHAERHLKARFVLTLDIADFFPSISWTQVRDIFANiG------FPDgVPSLLADLCTRNKV---FPQGAPTSPYLSNLIF 149
WP_159436682    105 TAAREFCPGRAVLKMDIEDFFPSITFVRVLGLFKAlD------FSDsASFILARLTTFADR---LAQGAPTSPALSNLIM 175 Pseudosulfit...
WP_073146368     91 TATKLLCPGRAILKVDIADFFPTITYRRVFGLFRRlG------YNDaAAFILSRLCTKDDK---LSQGAPTSPAISNAIM 161 Litoreibacte...
WP_119109523    163 HQTDKMLINEITSDvsifgNTQLTRYADDFVFSTDKSGACHEFVRKLERLLSTLESPR-LKLNTSKTKFMSRRggstlVT 241 Simplicispir...
WP_069717419    167 IRLDRRIQGYVSKR-----NITYTRYADDITLSANNPDKLIKVKGFVEKIIKNEGYILnENKARFLRPGNLVK-----IT 236 Bacillus sol...
WP_089962284    195 RGLDEQLSHLAKEA-----GHRYSRYADDLTFSSQ-QRVEPAFLDSVQQAVEQAGFELkPEKTRFSGFEGRME-----VT 263 Salipiger th...
WP_169734062    181 RDLDKELSRLALQT-----GHKYSRYADDLTFSSS-HRIETEFLDAVQTAVEQEGFNLkPGKTRFSGLGGRME-----VT 249 Ciceribacter...
WP_170125851    171 SKVDRELEALASSV-----GSKYSRYADDITFSAD-DYISEQFQVRVEDVVKSAGFELkASKTRYAGTGSRRE-----VT 239 Pelagimonas ...
WP_165193433    195 AKFDALLTEYVADR-----GFVYTRYADDITISSK-HWIDDEVLGDISALVQKFGFRLnERKTKFMGPGDRQE-----VT 263 Pseudohalocy...
WP_116487955    196 SEFDEKISNICKLY-----NLKYSRYADDMTFSSI-GRVPKDFHRIISRELFP-KFLLnDEKTQYMGAGDKKE-----VT 263 Caulobacter ...
9_ncbifamImport 150 LKTDEALTEAANQF-----EMRYSRYADDLTFSCDSQ-PSDEARLAFEQIIRDAGFRIqHSKTRLRGPSQARE-----VT 218
WP_159436682    176 RGIDFRLKRLAATW-----EVKYLRYSDDIFFHKEKNFNHPKLTAYLSKVIEDGGFTAnNKKTKYHPKGLPRT-----TL 245 Pseudosulfit...
WP_073146368    162 AGLDKRMERLAETW-----ELKYLRYSDDMFFHKERNFNHTRLADVASSVVESSGFIInSSKTKYHPKGLPRI-----TL 231 Litoreibacte...
WP_119109523    242 GLRINQEGLVRVHANYRDHVRLLLKHFAAGS-----LQSDDVIRLVGHLAFVEHADPRLFTRLSFRYF 304 Simplicispira hankyongi
WP_069717419    237 GLVISTDGSISIGRKKKRLLRAKIHKLYFDTnlsklEKDKLSLHINGWFSFLRSIDPDGLNQLKLYTK 304 Bacillus solimangrovi
WP_089962284    264 GVVIN-DKMQP-----PRAWRKRTRAKLHKLglaprLTRQQLAFLHGIVG--MAAQFQDSVQMQRLSA 323 Salipiger thiooxidans
WP_169734062    250 GVVIN-EKTQP-----SRVWRRRTRATLHKLgnsprLTRKNVSYLLGIKG--MAKQFQNSPQMQRFSL 309 Ciceribacter selenitired...
WP_170125851    240 GLICG-TFVQP-----PIEWRKLNRARLHNLgkkpvLEKSDIAYLLGLRG--YSMQFPDAVQMQALLA 299 Pelagimonas varians
WP_165193433    264 GIVLN-SSPNI-----PRNWCNSVRGYLHRVklaphKHVDEHAKVQGILGTLLAADPEAERKITKAAR 325 Pseudohalocynthiibacter ...
WP_116487955    264 GLVLGRDGPAI-----SREKLNGLRGWLHQIianpeQYVDDLDRLSGTLAMVRMVGGRGTGPILLQGG 326 Caulobacter radicis
9_ncbifamImport 219 GLLVNEKIq--PSRHTRRLLRAKFHNLLRSTs----LEQETLPSLGGWASYVNSYDVVKGEEYLSIVR 280
WP_159436682    246 GLLTHGEKPKI-----PGSQRRIYRSMFFKAsrnihWAHENREKLRGIIEWYKCVYGRDDTYTQYRAI 308 Pseudosulfitobacter pseu...
WP_073146368    232 GLLTHGPEPRI-----PGPQRKKYRAAFFRAsrninWAYERQAQLKGMLEWYKCVQGRSDEYIQYQAI 294 Litoreibacter ascidiacei...
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