4V3I


Conserved Protein Domain Family
DotU

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pfam09850: DotU (this model, PSSM-Id:401713 is obsolete and has been replaced by 430877)
Type VI secretion system protein DotU
DotU is a family of Gram-negative bacterial proteins that form part of the membrane-joining complex of the type VI secretion system. DotU binds tightly to IcmF and together they are tethered to the inner membrane at one end and the peptidoglycan layer at the other; they interact with Lip1 which then tethers the peptidoglycan layer to the outer membrane.
Statistics
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PSSM-Id: 401713
Aligned: 147 rows
Threshold Bit Score: 85.4153
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4V3I_A               39 LIDAATPLFGLSLRVRTLTE--CDNIEQIYRQTIEEIKAIEIELTEQGYEHAILMAYRYILCAFLDESVMGTEWGASS-- 114
Q13YF9               72 LLEAARPLLRALADLPVQLK--RDEIEQLRMLLEQEVRMFQKLCDQISIRRDHMLGARYCLCTALDEAAMQTVWGKGGet 149 Paraburk...
jgi:Bphy_7017        55 LLEAARVLLRSQADIPEMDLgaKGVIPTLRQLLLDEMKTFQKLCEQTSIRRDHMIGARYCLCTALDEAVMETPWGRTGdn 134 Paraburk...
Q0K246               61 LLKAARPLLRALADIPPKLDk-RGEVERLRTLLEQELRTFQAVCDRLNIDRKHTTAAHYALCTALDEAVSHTEWGGGSaa 139 Cupriavi...
Q63P44               64 LLEAATPLLRMLADMPATLDt-SEAVASLRTLLVREVALFQNLCEKADLPWKHMAVVRYCLCTALDEAANRTRWGGGG-- 140 Burkhold...
WP_012733032         64 LLEAARSLLRMLGDMPASLEs-SAAVESLRALLVREVAAFQKVCDKANLPWKHVAAVRYALCTGLDEAANRTQWGGGG-- 140 Burkhold...
Q93IS0               64 LLAAARPLLCALAAMPAKLD--AALVEPYRNLLVREMHLYQTLCDQANLRREHVLAVRYCLCTALDEAANNTTWGRRG-- 139 Salmonel...
wkYale:SALWKB2_0109  76 LLEAAQPLLLTLANMPTQLDsyDNGIESLRELLIREVHIYQTLCDQANLRREHVLAVRYCLCTALDEAANKTSWGGGG-- 153 Snodgras...
Q0KDW1               58 LLAAARPLLRALADMPTSLR--QDQAAALKGILVGEAKDFQAVCERANIRREHVLAAQYCLCTALDEAANGMPWGRHT-- 133 Cupriavi...
WP_012405325         46 LLEAARPLLRALADMPEYLD--HERVEQLRDLLEQEVRAFQKLCEQTSIRRDHMLGTRYCLCTAIDEAAMQTAWGKNSkv 123 Paraburk...
4V3I_A              115 ---------------------------LWAEhsmLSRFHNETWGGEKVFTILSRLEGEPHRYqALLAFIYHCLILGFEGK 167
Q13YF9              150 -------------------------gvEWNTnglATLFHEDRQGGTKVYLLIGRLMSDSHEHlDLLELIYRILSLGFEGR 204 Paraburk...
jgi:Bphy_7017       135 -------------------------gvSWGTvglATNFHEDRDGGTKIYLLVARLMQDPDQHdDLLEVIYHILSFGFEGR 189 Paraburk...
Q0K246              140 s------------------------lgAWPGsalASTFHQDREGGTKVFLILGRLVESVAENiGTIEVYYHILSLGFQGR 195 Cupriavi...
Q63P44              141 ---------------------------VWASqslLITYEGEVDGGEKFFLLIGRMATDPQEYvDILEILYRVLGLGFEGR 193 Burkhold...
WP_012733032        141 ---------------------------IWAArslLIRFEGEVDGGEKFFLLIGRMATDPQEYvDVLEVMYRILGLGFEGR 193 Burkhold...
Q93IS0              140 ---------------------------VWAGkslLVTFHGESEGGIKLFQIIGRLAASFQEHgNVLEVIYHLLGLGFEGR 192 Salmonel...
wkYale:SALWKB2_0109 154 ---------------------------AWARkslLIVFHNESYGGEKIFLLIGRLSPNPQEYgDVLEVIYRILSLGFEGR 206 Snodgras...
Q0KDW1              134 ----------------------------WANnslLIQLHGENDGGEKVFQLLGRLASSAAEHmDVIEVIYHILSLGFLGR 185 Cupriavi...
WP_012405325        124 pvqpgqsprgkdagaaasdinnhdagvEWVTrgmATIFHEDRQGGDKVYLLIGRLMSDPQEHlDLLEVIYRILSLGFEGR 203 Paraburk...
4V3I_A              168 YRVMEGgqaEREKVISRLHQLLSSLEesepqdLTRPTDHVVRAKYTLSRqmpvwSVFAGFIVLWVGLFLGYSY 240
Q13YF9              205 YRYEADgrrKHETVRQRLYNEIMTRRgslavaLSPHWQSHVKGRRVSFFdfpvwVTLAVLSVILIGLFGYFKY 277 Paraburkholderi...
jgi:Bphy_7017       190 YRSERDghrKHEAVRQRIYNEIMARRppvpveLSPHARSDVPPRRQSFYdfpvwITVTVLSLILLGMWGYFKY 262 Paraburkholderi...
Q0K246              196 YRGMADgdqQLHAIRGRLLDAISKHNgpvpkeLSSHSQPAPPGRFHHLSgipvwMTCTAGLLAVAGLAGYYKY 268 Cupriavidus nec...
Q63P44              194 YSVVADgrrHLEQIRQRLWTLITGARdaiqpeLSLRWRGAEPGRLPLLRsvpawASGALVFLLLFGLFAFYQY 266 Burkholderia ps...
WP_012733032        194 YSVAEDgsrHLEEIRQRLLTLVSGARdtmrleFSPHWRGEAYDQLKLLRsvpvwATASVAALVVFGRFGWYTY 266 Burkholderia gl...
Q93IS0              193 YSVQPDgrkQLDNIRQQLLTQLSQRRdpvmpaLSPDFQGAISGRLRRMRrvpvwLSAGIALLAMLTLFGLYSH 265 Salmonella ente...
wkYale:SALWKB2_0109 207 YSVRPDgrkQLDLIRQQLLSIISSGRdpvardLSPHWLADAAGRLRRLHwipvwASAAFFTCFLLVIFVWFKF 279 Snodgrassella a...
Q0KDW1              186 YAGHADgdrQLDAIRQRLLHLISAAResvprdLSPHWRGADAGRLSLLRtvpvwVTASVLALAVFGQFAWYKY 258 Cupriavidus nec...
WP_012405325        204 YRFEAGghrKHEAVRQRIYNEIMARRgivpvaLSPHWQSDVKGRRASFYdfpvwITVTLLSVILLGCFGWFKY 276 Paraburkholderi...
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