1CZF,1NHC,1HG8


Conserved Protein Domain Family
Glyco_hydro_28

?
pfam00295: Glyco_hydro_28 (this model, PSSM-Id:395231 is obsolete and has been replaced by 425588)
Glycosyl hydrolases family 28
Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
Statistics
?
PSSM-Id: 395231
Aligned: 14 rows
Threshold Bit Score: 283.893
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1CZF_A        45 CSTITLNNIEVPA--GTTLDLTGLT------SGTKVIFEGTTTFQ----------YEEWAGP--LISMSGEHITVTGASG 104
A2QAH3        50 CSDVVLSSIEVPA--GETLDLSDAA------DGSTITFEGTTSFG----------YKEWKGP--LIRFGGKDLTVTMADG 109 Aspergillus nig...
Q2UHL4        49 csnIVLKNIAVPA--GETLDLSKAK------DGATITFEGTTTFG----------YKEWKGP--LIRFGGNKITVTQAAG 108 Aspergillus ory...
B8N7Z8        46 CSTITLSNIEVPA--GETLDLTGLN------DGTTVIFSGETTFG----------YKEWEGP--LISVSGTNIKVQQASG 105 Aspergillus fla...
P47180        43 CSSIVIKDLTVPA--GQTLDLTGLS------SGTTVTFEGTTTFQ----------YKEWSGP--LISISGSKISVVGASG 102 Saccharomyces c...
CCT72952      43 CTNIVLAGFQVPT--GKQLDLSKLK------AGTTVTFEGKTTFA----------TTADNDFd-PIVISGSGITITGASG 103 Fusarium fujiku...
Q6D880        62 CGQGKAVRLSAGSssVFLSGPLSLPsgasllIDKGVTLRAINNAKsfenspsscgVVDKNGKgcDAFITAVSTTNSGIYG 141 Pectobacterium ...
P05117       103 CSSRTPVQFVVPKnkNYLLKQITFSgp--crSSISVKIFGSLEAS----------SKISDYKdrRLWIAFDSVQNLVVGG 170 tomato
XP_009124086  47 CQAPAPSQVLIPKg-DFKLGETVMTgp--ckSPIEFTLQGNVKAD----------GGSTQGK--DRWVVFEKINGFKLNG 111 field mustard
1NHC_A        18 csDVVLSSIEVPA--GETLDLSDAA------DGSTITFEGTTSFG----------YKEWKGP--LIRFGGKDLTVTMADG 77 
1CZF_A       105 -HLINCDGA--------RWWDGKGT-----SGKKKPKFFYAHGLD-SSSITGLNIKNTPLMAFSVQ-ANDITFTDVTINN 168
A2QAH3       110 -AVIDGDGS--------RWWDSKGTn----GGKTKPKFMYIHDVE-DSTFKGINIKNTPVQAISVQ-ATNVHLNDFTIDN 174 Aspergillus nig...
Q2UHL4       109 -AVIDGQGS--------RWWDGKGTn----GGKTKPKFIYAHKLQ-SSTIKGLHVKNSPVQVFSVQ-GNDVHLTDITIDN 173 Aspergillus ory...
B8N7Z8       106 -AKIDGDGS--------RWWDGKGGn----GGKTKPKFFYAHKLD-SSSITGLQIYNTPVQGFSIQ-SDNLNITDVTIDN 170 Aspergillus fla...
P47180       103 -HTIDGQGA--------KWWDGLGd-----SGKVKPKFVKLALTG-TSKVTGLNIKNAPHQVFSINkCSDLTISDITIDI 167 Saccharomyces c...
CCT72952     104 -HVIDGNGQ--------AYWDGQGSnn--qDNPKPDHFIVVKKTTgNSKITNLNIQNWPVHCFDITgSSDLTISGLILDN 172 Fusarium fujiku...
Q6D880       142 pGTIDGQGGvklqdkkvSWWELAADakvkkLKQNTPRLIQINKSK-NFTLYNVSLINSPNFHVVFSdGDGFTAWKTTIKT 220 Pectobacterium ...
P05117       171 gGTINGNGQ--------VWWPSSCKinkslPCRDAPTALTFWNCK-NLKVNNLKSKNAQQIHIKFEsCTNVVASNLMINA 241 tomato
XP_009124086 112 gGTFDGEGNa-------AWKANNCHkt--fECKKLPISVRFDFVD-NAEIKDITSLDAKNFHFNVIsGKNMTFDNIKIIA 181 field mustard
1NHC_A        78 -AVIDGDGS--------RWWDSKGTn----GGKTKPKFMYIHDVE-DSTFKGINIKNTPVQAISVQ-ATNVHLNDFTIDN 142
1CZF_A       169 ADGDtq--------ggHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGE------NIWFTGGTCIGGHGLSIGSVGDRS 234
A2QAH3       175 SDGDdn--------ggHNTDGFDISESTGVYISGATVKNQDDCIAINSGE------SISFTGGTCSGGHGLSIGSVGGRD 240 Aspergillus nig...
Q2UHL4       174 SDGDnn--------ggHNTDAFDVSESNGVYITGANVKNQDDCLAINSGE------NIEFTGATCSGGHGISIGSIGNRD 239 Aspergillus ory...
B8N7Z8       171 SAGTae---------gHNTDAFDVGSSTYINIDGATVYNQDDCLAINSGS------HITFTNGYCDGGHGLSIGSVGGRS 235 Aspergillus fla...
P47180       168 RDGDsa--------ggHNTDGFDVGSSSNVLIQGCTVYNQDDCIAVNSGS------TIKFMNNYCYNGHGISVGSVGGRS 233 Saccharomyces c...
CCT72952     173 RAGDkpnaksgglpaaHNSDGFDISSSDHVTLDNNYVYNQDDCVAVTSGT------NIIVSNMYCSGGHGLSIGSVGGKS 246 Fusarium fujiku...
Q6D880       221 PSTA------------RNTDGIDPMSSKNITIAYSNISTGDDNVAIKAYKgraetrNISILHNDFGTGHGMSIGSETMG- 287 Pectobacterium ...
P05117       242 SAKS------------PNTDGVHVSNTQYIQISDTIIGTGDDCISIVSGSq-----NVQATNITCGPGHGISIGSLGSGN 304 tomato
XP_009124086 182 PAES------------PNTDGIHLGRCEGVKILNTKIATGDDCISVGDGMk-----NLLIEKVVCGPGHGISVGSLGRYG 244 field mustard
1NHC_A       143 SDGDdn--------ggHNTDGFDISESTGVYISGATVKNQDDCIAINSGE------SISFTGGTCSGGHGLSIGSVGGRD 208
1CZF_A       235 N-NVVKNVTIEHSTVSNSENAVRIKTIS--GATGSVSEITYSNIVMSGISdYGVVIQQDYED-GKPTGKP-TNGVTIQDV 309
A2QAH3       241 D-NTVKNVTISDSTVSNSANGVRIKTIY--KETGDVSEITYSNIQLSGITdYGIVIEQDYEN-GSPTGTP-STGIPITDV 315 Aspergillus nig...
Q2UHL4       240 S-NTVKNVKVADSTVVDSDNGIRIKTIS--GATGSVSGVTYENITLKNIKkNGIVIEQDYKN-GGPTGKP-TTGVPITDL 314 Aspergillus ory...
B8N7Z8       236 D-NTVEDVTISNSKVVNSQNGVRIKTVY--DATGTVSNVKFEDITLSGITkYGLIVEQDYEN-GSPTGTP-TNGIKVSDI 310 Aspergillus fla...
P47180       234 D-NTVNGFWAENNHVINSDNGLRIKTVE--GATGTVTNVNFISNKISGIKsYGIVIEGDYLN-SKTTGTA-TGGVPISNL 308 Saccharomyces c...
CCT72952     247 N-NVVDGVQFLNSQIVNSENGCRIKSNS--GTTGTINNVTYQNIALTNISkYGVDVQQDYLN-GGPTGKP-TNGVKISNI 321 Fusarium fujiku...
Q6D880       288 ----VYNVTVDDLKMNGTTNGLRIKSDK--SAAGVVNGVRYSNVVMKNVA-KPIVIDTVYEK-KEGSNVP-----DWSDI 354 Pectobacterium ...
P05117       305 SeAYVSNVTVNEAKIIGAENGVRIKTWQ--GGSGQASNIKFLNVEMQDVK-YPIIIDQNYCDrVEPCIQQ-FSAVQVKNV 380 tomato
XP_009124086 245 WeQDVTDINVKNCTLEGTDNGLRIKTWPsaACTTTAAGIHFEDIILNKVS-NPILIDQEYCP-WNQCNKNkPSTIKLVDI 322 field mustard
1NHC_A       209 D-NTVKNVTISDSTVSNSANGVRIKTIY--KETGDVSEITYSNIQLSGITdYGIVIEQDYEN-GSPTGTP-STGIPITDV 283
1CZF_A       310 KLESVTGSVDSgATEIYLLCGSGS-CSDWTWDDVKVTG-G---KKSTACKNFP-------SVASC 362
A2QAH3       316 TVDGVTGTLEDdATQVYILCGDGS-CSDWTWSGVDLSG-G---KTSDKCENVP-------SGASC 368 Aspergillus niger CBS 513.88
Q2UHL4       315 TVNGVTGSVASkATPVYILCGKGS-CSDWTWKGVSISG-G---KKSDKCQNIP-------SGASC 367 Aspergillus oryzae RIB40
B8N7Z8       311 TFDKVTGTVESdATDIYILCGSGS-CTDWTWSGVSITG-G---KTSSKCENVP-------TGASC 363 Aspergillus flavus NRRL3357
P47180       309 VMKDITGSVNStAKRVKILVKN---ATNWQWSGVSITG-G---SSYSGCSGIPs-----gSGASC 361 Saccharomyces cerevisiae S288C
CCT72952     322 KFTKVTGTVASsAQNWYILCGDGS-CSGFTFSGNAITG-G---GKTSSCNYPT-------NTCps 374 Fusarium fujikuroi IMI 58289
Q6D880       355 TFKDVTSETKG---VVVLNGENAKkPIEVTMKNVKLTS-----DSTWQIKNVN-------VKk-- 402 Pectobacterium atrosepticum
P05117       381 VYENIKGTSAT-KVAIKFDCSTNFpCEGIIMENINLVGeSg-kPSEATCKNVHfnnaehvTPHCT 443 tomato
XP_009124086 323 TFRNIRGTSGN-KDAVKLLCSKGHpCENVEIGDINIDYtGpdgPPTFECTNVTpk----lVgtqn 382 field mustard
1NHC_A       284 TVDGVTGTLEDdATQVYILCGDGS-CSDWTWSGVDLSG-G---KTSDKCENVP-------SGASC 336
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap