Conserved Protein Domain Family
recJ

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TIGR00644: recJ 
single-stranded-DNA-specific exonuclease RecJ
All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273193
Aligned: 14 rows
Threshold Bit Score: 607.764
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAA62789      23 LPPLLRRLYASRGVRSAQELERSVKGMLPWQQ-----L-SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAM 96   Escherichia coli
WP_010231367  32 LHPVIAQVLVSRGFQSVQEIRDFLYPQFPSLHpa-ssF-LDMEKAVARLLKSKENNEHVMIYGDGDVDGITGVTLLVEFL 109  Chlamydia muri...
WP_010872188  30 sGQFAAQLLWQRGIQSADQLGGFLSPDCYTPTsp-weFgQEMKWAVQRLGQAMAQKEKVTIWGDFDADGITSTAVLWEGL 108  Synechocystis ...
WP_002853146   5 NKNEIKKILASRFEKD-------LHTKLCDLPlp-ccL-KDAYKAANRIKEAVEKNEKVAIVGDYDVDGIISCVIMAEFF 75   Campylobacter ...
WP_001948912   5 LKAQIKKRLAS----------IAYNEKGF--Psp-flF-KDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFF 70   Helicobacter p...
WP_010881414  26 YGRILAQLITNRGYER--EADKFLNPKLSHIPty-reL-EGIEEAIERIKEAVLKKKRIIIYGDYDVDGITGTAILYRVL 101  Aquifex aeolicus
WP_004081936  23 LNEIASRILVNRGFTTREAVEAFLFVNESHQHdp-flF-NDMEKAVETLLEARSKNELVLIHGDYDVDGITSTVMLKEFL 100  Thermotoga mar...
WP_011713414  33 LSHYLAPLLASRKLCGAGETRQFLAPRLKDLAdp-ydL-LDMRVAVERLAEALERGEKIAVFGDYDVDGATSSALLMRYF 110  Magnetococcus ...
WP_010919262  45 LIEPLAKALVSRGVT-LEHAEHYLRPTLKALFpdpslF-TDMDRAAEILIDALERGRPTMVFADYDVDGATSAAQLVRWF 122  Caulobacter vi...
WP_010909765  40 VPDIVARVLAGRGVT-ADETERFLEPTIRDLLpnpasL-TDMDKAATRIAAAVMAREKVAIFGDYDVDGAASSALLKRFL 117  Mesorhizobium ...
AAA62789      97 RSLGc--SNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDTLPAAE 173  Escherichia coli
WP_010231367 110 QMLG---VKTSYCCSGTLFKQHGEITSLISQMLQDGVSLLITVDCGITAGREVRSINKQGIDVIVTDHH-TPTGKLPHCI 185  Chlamydia muri...
WP_010872188 109 GQFFpqdSQLTYTIPNRLRESHGLNRPGLERLATQGTKLIVTCDTGSTNLDEIVYAQQLGMDVIVTDHH-TLPDDRPEVV 187  Synechocystis ...
WP_002853146  76 DDIG---FDYIIRIPNRFKDGYGLNAEIINEL---DVNLIITVDNGIAALEAAKLCKEKNIDLIITDHH-MPQDILPDAF 148  Campylobacter ...
WP_001948912  71 ENLNy--KHVRVAIPNRFMDGYGISKKFLEKHHAP---LIITVDNGINAFEAAQFCKEKNYTLIITDHHcLHNNEVPDAY 145  Helicobacter p...
WP_010881414 102 KLLG---AKVYPVLPNRQT-GYGLNKELMSIFEKYG-DFLITVDNGTSAVEEIDQS---SLETVVIDHH-NVPPRIPKKA 172  Aquifex aeolicus
WP_004081936 101 EENG---WRVDVYIPhRIEEGYGIQPENISTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIVTDHH-EVNGDLPPAd 176  Thermotoga mar...
WP_011713414 111 HELG---VALRVYIPnRLTEGYGPSVGAMRTLAEEGVSLVITVDCGITAFEPLQEAKALGLAVIITDHH-QAREQLPEAl 186  Magnetococcus ...
WP_010919262 123 RHMG---VELPIYIPdRLTEGYGPSPAAFRKIRDGGAELVVTLDCGAAAYDAIASAGEIGLEVVVIDHH-LMREDPPAAa 198  Caulobacter vi...
WP_010909765 118 AHFS---IPSEIYIPdRIFEGYGPNPDAMRELVSRGATLIVTVDCGTNSAISVDAANEAGADVVVLDHH-QVGGALPAAi 193  Mesorhizobium ...
AAA62789     174 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDqgwfderniA------IPNLAELLDLVALGTVADVVPLDANNRI 247  Escherichia coli
WP_010231367 186 ATLNPKLDKNSYPNKELTGVGVAFKLVCATYEELIK---------QdaswkdKIDLLHFLDLVSLGTIADVGRLSGENRI 256  Chlamydia muri...
WP_010872188 188 AIINPRYFADGHPLFNLSGVAVAFKLVEALYNQYPTv--------P------QQPLEDLLDLVAIGLIADLVTLQGDCRY 253  Synechocystis ...
WP_002853146 149 AIINPKQKDCDFPEIEICGAQVAWYLIAALKEVCK----------L------KYDMCKFLELLAIAIVADMMELRDLNRA 212  Campylobacter ...
WP_001948912 146 AVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLKK---------E------KSHSSELLCLAGVATIADMMPLTFFNRF 210  Helicobacter p...
WP_010881414 173 LIVNPKVGAKREGLKALSSSALSFYLGSALIREFN----------L------DEDPRNFLDLVALGLLADYMPVNPVTRT 236  Aquifex aeolicus
WP_004081936 177 AIVNPKVPGENYPFRDLAGVGVTYKLVQALSEATNYphp-----------------erFLELVALGTVADMVTLLDENRY 239  Thermotoga mar...
WP_011713414 187 AVINPNRQDEPFPYKELAGVGVAFYLVMALNRLLRErgwf-nkgrQ------EPVLKPLLDLVAVGTVADVAGMRGLNRA 259  Magnetococcus ...
WP_010919262 199 AVVNPNRPGCPSGQGVLAAAGVTFVLLTALNREARKrglf-tedrP------QPDPRQWLDLVALGEVCDVTQLVGFNRA 271  Caulobacter vi...
WP_010909765 194 AVVNPNRDDDLSGQGHLCAAGVVFLALVQTAKILRgls-----dvA------PPDLLSLLDLVALATVCDVVPLTGVNRA 262  Mesorhizobium ...
AAA62789     248 LTWQGMSRIRAGKc-----RPGIKALLEVANRDAQK--LAASDLGFALGPRLNAAGRL-DDMSVGVALLLCDNIGEARVL 319  Escherichia coli
WP_010231367 257 LVSYGIKEITKGK------RLGLKKLCSLSGVDKSD--ISSTNLGIRITPKLNSLGRL-ADSSQGVKLLLSQDPRTVGTI 327  Chlamydia muri...
WP_010872188 254 LAQRGIAQLRTQKdpatatRPGIHALLNLCNRNGD----RPTDIGFGIGPRINAISRIkGDASFGVELLTSRDTKVCNQL 329  Synechocystis ...
WP_002853146 213 LVRRGIDHINKSK------RAAFRAIKH--YYQKDK--FALDNIGFLIAPLINSAGRM-DDASISYEFLHTKDFNKALEY 281  Campylobacter ...
WP_001948912 211 LVSKALYFLQKES------LGAMGFLRQREVFRKRS--LKASDISFNIAPLINSAGRM-QDAKMALDFLSANNFQDGYSL 281  Helicobacter p...
WP_010881414 237 LAVKGMYLLEKIAqgk-vrKPGVKALLEISSVNGN---VTSRDVYFSLAPRINAAGRI-SKPKFALDLLLEEDERRAREL 311  Aquifex aeolicus
WP_004081936 240 FVKKGIELLANTk------RVGLKRLLERLGLRN----LTSHDISYKIAPRLNAAGRM-GSANDAFNLLIMNDPAKADSV 308  Thermotoga mar...
WP_011713414 260 LVTTGLHVLSEr------sNPGLAALMQVVGIGEEVkeLTSTHIGFQLGPRLNAGGRL-GQGALGYQLLSCHDQAQALPI 332  Magnetococcus ...
WP_010919262 272 LTALGLRAMGAw------aNPGLKALFEVGKGSGEP---SVFTAGFILGPRINAGGRV-GRSDLGARLLSTDDPLEARAL 341  Caulobacter vi...
WP_010909765 263 FVVKGLQMARQq------kNEGLAALARVSRIGEPI---STFHLAYLIGPRINAGGRI-GDAALGSRLLATDDPVEARTI 332  Mesorhizobium ...
AAA62789     320 ANELDALNQTRKEIEQGMQIEALTLCEKLErsrdTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDgTlK 398  Escherichia coli
WP_010231367 328 VSELAIVNQERQRIEAEVLRDVERILAANPk--lTAQSAIVLASPYWHSRVIPIISARLARTYNKPVAIIALQdGI-G-K 403  Chlamydia muri...
WP_010872188 330 AAEAETLNSRRKGLQKSVIIEIDQRLQNIDl---STTGVVVLTDPQWPTGVLGLAASHVAQTCGRPAILLNTQdGK-IaK 405  Synechocystis ...
WP_002853146 282 LEQIVSFNESRKDEEKQLFEDSLNQIDE-------NDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFSQNeE--HlK 352  Campylobacter ...
WP_001948912 282 YERLKACNTKRKMIQQQVFEEAFKHAMV-------GEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKeGVy--K 352  Helicobacter p...
WP_010881414 312 ALKLEEINRRRKAITNLTYKEAKKKAIEEI-----DKNFLVVWDEEWHPGILGIVAGRLAGEFNKPVAVFSKGkTKa--V 384  Aquifex aeolicus
WP_004081936 309 VDRLMELNSIRRKTEWAIYKEAIEIIETNd---lWKDPVIVVAKENWHVGVIGIVAAKLANRYEKPVAVVSLDeKIa--K 383  Thermotoga mar...
WP_011713414 333 AQTLDASNKERQEIERTLLKQAMDQVEAEnq--pILRRGLVVAGEGWHAGVIGIVASRLCDKYSKPALVIAIDaETgvgK 410  Magnetococcus ...
WP_010919262 342 AEELDSLNTERKAVEAAVVEEAAAMLERGSnf-nPDAPVIVVAGDDWHPGVIGIVAGRLRERYRKPVVVIGIDrAAnvgK 420  Caulobacter vi...
WP_010909765 333 AETLDRLNQERQLMEQEMLAAARAEADAELag-gSGPAIVVTASNNWHPGIVGLLASRLKDHARRPAFAIAFN-AVgigT 410  Mesorhizobium ...
AAA62789     399 GSGRSIQGLHMRDALeRLDTLypgMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLL-QGEVVSDGPLSPAE 477  Escherichia coli
WP_010231367 404 GSLRTIGAFPLLGVL-RKCES---FFLSYGGHDFAAGLMIKEEQIEGFRKKFIHLVNSSLRKDEA-TLTLPLDVCMDFSQ 478  Chlamydia muri...
WP_010872188 406 GSARSVANIDLYALLhSQR-H---LMLGFGGHPFAAGLSLPLDKLPLFTEAVNQQFWQSYGAQISlDPILAVDLQVKVAD 481  Synechocystis ...
WP_002853146 353 GSARSVGKIDILALIsKTNS----ILSNYGGHKGAAGISLNSENFEQFKNKIKKECSQISES-EF-LDTDEILGILEPSE 426  Campylobacter ...
WP_001948912 353 GSGRSSPNIDLIDALnGV-SS---LLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFYEK-EPPL----TLNLKD 423  Helicobacter p...
WP_010881414 385 GSIRSIESIDVYDKVsTMRD----MFLKWGGHDKAMGLTLPSNRLEEFREKVNQIFEKVK---ES-EVIIPVDMEIDPRE 456  Aquifex aeolicus
WP_004081936 384 GSIRSYNGYDIMNIFnEDILk---IFEEIGGHSSAVGFSLKRDQLEPFR-DYIRNIS--LE--ER-EEKVIVDAEVRMED 454  Thermotoga mar...
WP_011713414 411 GSGRSIPGINLLAAIeAGa----aHLEHFGGHKVAAGLTIQREKIPAFMEAFEDHLTRHYQASAF-FPRLTVDAELPLDE 485  Magnetococcus ...
WP_010919262 421 GSGRSQSGVNLGRAIqAAFEa--gLLMAGGGHAMAAGLSIRPEMIPEFRAFLEERLAGEMEAVG--VEAVEVDALVQPRA 496  Caulobacter vi...
WP_010909765 411 GSGRSVSGFDLGRLVrEAADa--gLIVKGGGHGMAAGITVERARLGELRAFFEERAAADVFRLQD-EESLAIDGALAAEG 487  Mesorhizobium ...
AAA62789     478 MTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLV--------G--ERHLKVMVE---------PVGggPLLDGIAFN 537  Escherichia coli
WP_010231367 479 ISQDLISSMELLEPFGKGNPSPVFYTrAIQVRYPKLL--------S--GNHVKLYLN---------SGE--RNLEGTAFG 537  Chlamydia muri...
WP_010872188 482 LGQDLFREFNLLEPYGMGNPAPKLLLeNVQVGRPSFRnikdrtgnK--VSYLKTSFRvtdyppktdDDG--QVVQCPGVW 557  Synechocystis ...
WP_002853146 427 IDFEMLEILESFEPFGHKNPRPFFVLeNLCVKNKKLL--------GkdEKHLKLVLT---------KEN--KTIEALFFN 487  Campylobacter ...
WP_001948912 424 IDRELLEIIEMGEPYGQENPEPLFQAkNLEVIEERII--------K--ESHQVLRFK---------DKE--CVKEAIYFS 482  Helicobacter p...
WP_010881414 457 FGEEDLRTIKSLEPFGEGNPHPTFMTt---VKDVKL------------GEGYKVSIN---------S------VEMECWD 506  Aquifex aeolicus
WP_004081936 455 IDDRFIEDIKKLMPFGQGNPEPVLLFkDVLVEKIHFF--------GedGSNVFLHLK---------NGe--kNLEVVGYN 515  Thermotoga mar...
WP_011713414 486 LDFAVARQIQSFSPFGPGNPEPIFILpRVSLRGIKVL--------K--ERHLAMSIV---------CPrthqQIEAIGFR 546  Magnetococcus ...
WP_010919262 497 ANRALLDDFQRLAPFGPGNPEPLFALsQVRPERVSAL--------K--GGHVRMDLV---------GPtg-dRIKAISWR 556  Caulobacter vi...
WP_010909765 488 ATLSLLDALEKAGPFGAGHVAPVFVLpRHRLADARPV--------G--TNHIRCELQ---------SDag-gRIPAIAFR 547  Mesorhizobium ...
AAA62789     538 VDT----AL--WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 575  Escherichia coli
WP_010231367 538 QGD----KIslLKANWNMPLDIAYTLRVMKRSVHGAVRLLIQDF 577  Chlamydia muridarum
WP_010872188 558 WGHh------pDELPQNEPLDLVVELDFNTYDRQYEVRLIDFRL 595  Synechocystis sp. PCC 6803
WP_002853146 488 FDK---------EPELNQNISLLGSISKNEFRGMVTPQFVVKEI 522  Campylobacter jejuni
WP_001948912 483 AER---------FLKAGEKVSVLFSVELDECS--NEPKMFVKSL 515  Helicobacter pylori
WP_010881414 507 T-------------ELLKHLKIGKKILYRLDGGKFILEDVENGF 537  Aquifex aeolicus
WP_004081936 516 FKNl--sSS--LSTLPVTPTRGDVVVNLRPMGNGVSYYLISLDV 555  Thermotoga maritima
WP_011713414 547 MAPgpivDA--IQAGDVAVWDVAGKLTIETWRGREKMKLQLSDV 588  Magnetococcus marinus
WP_010919262 557 SAEtplgQR--LLAG-GGPLDVVGKLKPDDYMGRNGVQLEIEDA 597  Caulobacter vibrioides
WP_010909765 548 AVDtvlgEF--LFKNRGKSVHVAGSLSGNYWNGNRTVQFRIVDA 589  Mesorhizobium loti
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