1DSB,1A2J,1BED


Conserved Protein Domain Family
DsbA_DsbA

?
cd03019: DsbA_DsbA 
Click on image for an interactive view with Cn3D
DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Statistics
?
PSSM-Id: 239317
Aligned: 64 rows
Threshold Bit Score: 115.463
Created: 22-Dec-2004
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:catalytic residues [active site]
Evidence:
  • Comment:CXXC motif
  • Comment:The oxidizing power of DsbA comes from the low pKa of the first cysteine (~ 3), due to the unusual stability of the thiolate anion form at physiological pH.
  • Comment:The thiolate anion form of the first cysteine is stabilized by hydrogen bonds and electrostatic interactions with histidine.
  • Comment:The conserved cis-proline plays an important role for the stabilization of DsbA and other thioredoxin-like oxidoreductases.
  • Citation:PMID 9655827
  • Citation:PMID 9300489

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                  # ##                                                 
1DSB_A        5 DGKQYTTLEKpv--agAPQVLEFFSFFCPHCYQFEEVLHISDnvkkklpeGVKMTKYHVNFMGgdl---gkDLTQAWAVA 79  Escherichia coli
NP_719258    25 EGTHYTQISDkal-ssEPKLTEFFSFYCHNCFNMETNYLPDIkan--lnkSIAFDSKHVDFMNsal---gtEVMRSLAVI 98  Shewanella oneid...
NP_719403    23 EGVEYQVLPKaiqfdaPNQVVKIYSINCPFCYKYEKAGIPNVkii---paGMSFEQYHITTKPpf----giEKSTALAIA 95  Shewanella oneid...
NP_755657    30 EGTDYMVLEKpip-naDKTLIKVFSYACPFCYKYDKAVTGPVsek--vkdIVAFTPFHLETKGey----gkQASEVFAVL 102 Escherichia coli...
CAG25537     27 EGVHYEVVSEra--tkKPEVKEFFSFYCPACNNMEPLVAEIKpml---dkGVKFKKSHVDFVGvrdtehqqMISQALATA 101 Pseudoalteromona...
YP_156952    26 EGVHYEVVADea--tsKPEIAEFFSFYCVHCYRFEPIAKEIKse-----yPDAFKKAHVSFLGprn--mgeTMTQAFVVA 96  Idiomarina loihi...
ZP_00367052  20 MADDFITLSEtlp-dsKNSVVEAFSYKCIHCYNHHKFGTLEKlre--afpNLYFKLYPVSLMNgey---anELNELFAFA 93  Campylobacter co...
YP_178953    27 EGKEYVILKNpia-naDNSLIEIFSYHCTHCYDHHKFNTMGKvke--klpNLTYKFYPVSSMGdy----grQANEIFAFA 99  Campylobacter je...
ZP_00370573  17 FSQDYITLKDki--etKNTLIEVFSYKCIHCYNHQRFGTLEAlre--kipNLSYEIYPISIADvkf---gtLLNELFAYA 89  Campylobacter up...
ZP_00535451  28 EGTDYVKLAKpip-naQGTLIKVFSYDCPFCYKYDKKITPNLvpk--lpsDLKFRPFHLKTKGky----gvQGSELFAVL 100 Geobacter metall...
Feature 1                                                                                       
1DSB_A       80 ma---------------lgVEDKVTVPLFEGVQKTQTIRs----------------aSDIRDVFINagi----kgEEYDA 124 Escherichia coli
NP_719258    99 qd---------------ldNKDALTHAMFAAIQGEEGANghdhsapghkhesqinsrDDIKQVFAKfgi----daAKYDK 159 Shewanella oneid...
NP_719403    96 kvvk------------gdsVFKELKNKYYEQYHVKKEKFk-----------------DSDSAIAYSldil-smsrAEFDS 145 Shewanella oneid...
NP_755657   103 inkdkaag---islfdansQFKKAKFAYYAAYHDKKERWsdg------------kdpAAFIKTGLDaag---msqADFEA 164 Escherichia coli...
CAG25537    102 ev---------------lpQKDKIIAAIFSHIHTKRANFne---------------lADVKDVFVAqgv----dgDKFDK 147 Pseudoalteromona...
YP_156952    97 qk---------------lnKEEEIAAAIFDYNFNKNSMLts---------------kQDIRNVFIVngv----sgDEFDK 142 Idiomarina loihi...
ZP_00367052  94 qfkdeqng---kdasysdsLSHKLADVYFVVYFINKQDNfs--------------ssDEFYDIGLKamnvdknevLNFLS 156 Campylobacter co...
YP_178953   100 tfkdgvnk---idptdknsLTHKVAEAYFNAYFKKKQRWeng------------knpEAFYSVGLKamn---vskADFEN 161 Campylobacter je...
ZP_00370573  90 ifmdrknq---kdashkdsLAHHLAQAYFTQYFLMNKKGqviatk-------dfeneKSFLQNGLSvlkisekefKDFIQ 159 Campylobacter up...
ZP_00535451 101 llkdqkaglsdrdlygpksLLKKAKMAYYTAYHDKKERWda--------------gpDAYLKTGLDavg---mskAEFDK 163 Geobacter metall...
Feature 1                                     #                                   
1DSB_A      125 AWNSFvvkslVAQQEKAAADVQL----RGVPAMFVNGKYQLNPQGMdtsn--mdvfVQQYADTVKY 184 Escherichia coli
NP_719258   160 LADSKsteekLALWRAQQNQFRI----ESVPAFIVNDKYAVNLSSIr--------tLDELISLINY 213 Shewanella oneidensis MR-1
NP_719403   146 HAKDPavkalLAKWDLGVEVAKI----QGIPAITVNGKYLINTKSIssm-----evLKELIAELSD 202 Shewanella oneidensis MR-1
NP_755657   165 ALKEPavqetLEKWKASYDVAKI----QGVPAYVVNGKYLIYTKSIk--------sIDAMADLIRE 218 Escherichia coli CFT073
CAG25537    148 LFKSFsvrtlSSKMKRDQDYFKEkgalRGVPTFIVNGKYKLLLGREsgi-----sePADITKLINY 208 Pseudoalteromonas haloplanktis...
YP_156952   143 AMASFtvraaASKMDRRASNLGV----NATPTFIVNGKYKMLPQGFrdsdnfqedfSDLAGYLLEK 204 Idiomarina loihiensis L2TR
ZP_00367052 157 TPKAKe---iLNEFKRANDIART----YGTPAFVVNGKYQINPSAIs--------sMQALEDIVKK 207 Campylobacter coli RM2228
YP_178953   162 FLKTPeaaelLKSYEIANPISQN----YGTPAFVVNGKYQIVPSAIn--------sPEALIEITKE 215 Campylobacter jejuni RM1221
ZP_00370573 160 TKEAKe---lLERFEWANGVAKN----YGTPAFVINGTYQIKPEAIdsf-----esLLKIIEELKD 213 Campylobacter upsaliensis RM3195
ZP_00535451 164 AKADPkvkalLKEWDASYDVAKV----QGVPGFVVNGKYLIMTKSIt--------sIDGMLKLINE 217 Geobacter metallireducens GS-15

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap