4AAA,4BBM


Conserved Protein Domain Family
STKc_CDKL2_3

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cd07846: STKc_CDKL2_3 
Click on image for an interactive view with Cn3D
Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3
STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The CDKL2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270836
Aligned: 9 rows
Threshold Bit Score: 531.998
Created: 24-Sep-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:4AAA: Human CDKL2 binds CDK1/2 inhibitor; contacts at 4A.
  • Structure:4BBM: Human CDKL2 binds inhibitor Tcs2312; contacts at 4A.
  • Comment:also based on structures of other CMGC kinases bound with ATP or ATP analogs
  • Citation:PMID 9739089

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #####   #            # #                               #               #
4AAA_A        25 EKYENLGlVGEGSYGMVMKCRNKDtgRIVAIKKFLESDDDk-mVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 human
4BBM_A        25 EKYENLGlVGEGSYGMVMKCRNKDtgRIVAIKKFLESDDDk-mVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 human
AAH74132       2 EKYENLGlVGEGSYGMVMKCRNKEtgRIVAIKKFLESEDDk-mVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 80  African clawed ...
XP_002119969   2 EKYDNLGmVGEGSYGMVMKCKHKEsgQIVAIKKFLESEDDk-mVKKIAMREVRMLRKLHHENLVNLIEVFRRRKRLYLVF 80  Ciona intestinalis
Q8IVW4         2 EMYETLGkVGEGSYGTVMKCKHKNtgQIVAIKIFYERPEQs--VNKIAMREIKFLKQFHHENLVNLIEVFRQKKKIHLVF 79  human
XP_001627502   2 EKYENLGlVGEGSYGMVMKCRHKDsnQIVAIKKFIESEDDk-mVKKIAMREVRMLRQLRHENLVNLIEVFRRKKRLFLVF 80  starlet sea ane...
XP_396731      2 NKYEMIEiVGEGSYGMVMKCKHREtgQFVAIKRFLESEESdyeVRKMAFREIRMLKKLRHDNLVNMIEVFRRKKRFYLVF 81  honey bee
XP_784044      9 EKYESFGlVGEGSYGQVLKCRHKEtnQVVAIKKFLEGEDDk-mVKKIAMREVRMLKQLRHENLVNLIEVFRRKKRLYLVF 87  purple sea urchin
XP_426294      2 EKYQVLGlIGEGSYGVVSRCRNKEsgQVVAVKKFLESEDNa-aVRKIAVREIKLLKQLRHENLVSLLEVYKKKKRWYLVF 80  chicken
Feature 1        ###  #                                       # # ## #          #                
4AAA_A       104 EFVDHTILDDLELfpnGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSqsGVVKLCDFGFARTLAAPG-EVYD 182 human
4BBM_A       104 EFVDHTILDDLELfpnGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSqsGVVKLCDFGFARTLAAPG-EVYD 182 human
AAH74132      81 EFVDRTVLDDLEQfpnGLDFNRVRKYLFQIIRGIGFCHNHNIIHRDIKPENILVSlsGIVKLCDFGFARTLAGPG-EDYT 159 African clawed ...
XP_002119969  81 EFVDHTVLDDLEKypnGLNEMTVRKILWQVLRGVEFCHSHNIIHRDIKPENILNSrsGVIKLCDFGFARTLAAPG-EVYT 159 Ciona intestinalis
Q8IVW4        80 EFIDHTVLDELQHychGLESKRLRKYLFQILRAIDYLHSNNIIHRDIKPENILVSqsGITKLCDFGFARTLAAPG-DIYT 158 human
XP_001627502  81 EFVDHTVLDDLERypnGLDENTVRKVMWQVLRAIEFIHRHNIIHRDVKPENILVSrsGIVKLCDFGFARTLASGQgEAYT 160 starlet sea ane...
XP_396731     82 EYLDHTLLNELENaegGLGLEMSKRYIYQVLRGLDFCHNNNIMHRDIKPENILISpnGVVKLCDFGFARFVNSPN-ESCT 160 honey bee
XP_784044     88 EFMDHTVLDELEKypmGLDESLVRKYMWQILKGIEFCHINNIIHRDIKPENILVSksKVVKLCDFGFARTIAGPG-EIYT 166 purple sea urchin
XP_426294     81 EFVDHTVLDDLEAfpnGLDYSRVRKYLFQILRGIAFCHSQNIIHRDIKPENILVSqsGVVKLCDFGFARTLAASG-EAYT 159 chicken
Feature 1                                                                                        
4AAA_A       183 DEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGvR 262 human
4BBM_A       183 DEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGvR 262 human
AAH74132     160 DYVATRWYRAPELLVGDIKYGKAVDVWAIGCIVTEMLTAQPLFPGDSDIDQLHHIIKCQGNLTPRHQELFYRNPMFAGvS 239 African clawed ...
XP_002119969 160 DYVATRWYRAPELLVGDTKYGRAVDIWAVGCLITEMLTGDPLFPGDSDIDQLYHIIKCFGNLCPRHREIFQRNPLFAGmR 239 Ciona intestinalis
Q8IVW4       159 DYVATRWYRAPELVLKDTSYGKPVDIWALGCMIIEMATGNPYLPSSSDLDLLHKIVLKVGNLSPHLQNIFSKSPIFAGvV 238 human
XP_001627502 161 DYVATRWYRAPELLVGDTKYGRAVDVWAVGCLLAEMLTGEPLFPGDSDIDQLYHIMRCFGNLISRHREIFQKNPLFVGmR 240 starlet sea ane...
XP_396731    161 DYVATRWYRAPELLVGDPRYGRPIDIWAVGCLYAEMVVGNPLFPGDSDVDQLYRITKILGGLCMKHQTLMDRSRPGQIlR 240 honey bee
XP_784044    167 DYVATRWYRAPELLVGDTKYGKAIDLWAVGCLQAEMLTGEPLFPGDSDIDQLYHIIRCFGTLIQRHKEIFLKNPLFVGmR 246 purple sea urchin
XP_426294    160 DYVATRWYRAPELLVGDTKYGRAVDVWAIGCLVTEMLTGEPLFPGDSDIDQLYHITKCLGNLIPRHQELFCKNPLFAGmR 239 chicken
Feature 1                                                                
4AAA_A       263 LPEIKEREP--------LERRYPKlSEVVIDLAKKCLHIDPDKRPFCAELLHHDFF 310 human
4BBM_A       263 LPEIKEREP--------LERRYPKlSEVVIDLAKKCLHIDPDKRPFCAELLHHDFF 310 human
AAH74132     240 LPDMKEAES--------LERRYPKhSPVMLDLAKSCLHIDPEKRPACGTLLQHELF 287 African clawed frog
XP_002119969 240 LPDVRDIEP--------LERRFPKfSSEVLDLMKQCLRLDPNDRPSSSLLLRHEFF 287 Ciona intestinalis
Q8IVW4       239 LPQVQHPKN--------ARKKYPKlNGLLADIVHACLQIDPADRISSSDLLHHEYF 286 human
XP_001627502 241 LPDIKEVEP--------MERRFPRiSPMAVDMLKLCLKMDPSERPTCAQLLNHDFF 288 starlet sea anemone
XP_396731    241 HASADELIGppqsglfsIRKLFPKwDIIAIDFLAQCLRMDPDLRSKSSMLLEHPFF 296 honey bee
XP_784044    247 LPEVKNVEP--------LEKRFPTlSGLSISMMKSCLHLDPDQRPTCTQFLKHEFF 294 purple sea urchin
XP_426294    240 LPEVKEAES--------LDRRYPKlSASVLDLAKKCLQIDPDKRPSCAELLQSDFF 287 chicken

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