1PQV


Conserved Protein Domain Family
TFSII

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TIGR01385: TFSII 
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transcription elongation factor S-II
This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Statistics
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PSSM-Id: 273592
Aligned: 6 rows
Threshold Bit Score: 373.405
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1PQV_S           3 SKEVLVHVKNLEKNKS----NDAAVLEILHVLdK-EFVPTEKLLRETKVGVEVNKFKKSTNVE-ISKLVKKMISSWKDAI 76  Saccharomyces...
AAC60115         5 GVEVARIAKKLDKMVAk--kNTGGALDLLREL-K-NMPITLELLQSTHVGMSVNALRKQSNDNeIITLSKSLIKSWKKLL 80  African clawe...
P52652           4 LEETQSLCKQVDDICNngmeSVEQCNKLLDQL-S-KIPMSIEIIQKTNIGIKVNMMRKKVTDDaVAKRAKNIIKDWKNVV 81  Caenorhabditi...
AAA34580         3 SKEVLVHVKNLEKNKS----NDAAVLEILHVL-DkEFFPTEKLLRETKVGVEVNKFKKSTNVE-ISKLVKKMISSWKAQL 76  baker's yeast
P49373           3 SADIRSAKAALEKAIQg--kNIETIINIMTRL-KnEVVATEELLKETRLGLVVGKLRSHPNEK-VGEQAREIVKKWKADV 78  Schizosacchar...
TIGR:At2g38560  11 GAKKAADAAALDGVTSsg-pEVSQCIDALKQL-K-KFPVTYDTLVATQVGKKLRSLAKHPVED-IKSVATDLLEIWKKVV 86  thale cress
1PQV_S          77 NKnkrsrq---------------aqqhhQDHAPgnaEDKTTVGESVNGVQQPASsq------sdAMKQD----------- 124 Saccharomyces...
AAC60115        81 DG--------------------------SEQPG---KEKLQVKPTCSKELGSSK----------KIEVP----------- 110 African clawe...
P52652          82 DGks-----------------------kSQDDGgapPAKKHRKESVEEAKPEKK----------KIEAPy---------- 118 Caenorhabditi...
AAA34580        77 IKnkrcrq---------------pqqhhQDHAPgnaEDKTTVGESVNGVQQPASsq------sdAMKQD----------- 124 baker's yeast
P49373          79 SKgr-------------------------------pLKTTTTTSSTPSKHADVGsq------aqKQVQ------------ 109 Schizosacchar...
TIGR:At2g38560  87 IEetakakktegtngckeakvnkmdvekPSNPApvkVQKLQRGDSAKSIKVERKepdnkvvtgvKIERKvpdikvtngtk 166 thale cress
1PQV_S         125 --------------KYVSTKpr------nSKNDGVDTAIYHHKLRDQVLKALYDVLAKES-------EHPPQSILHTAKA 177 Saccharomyces...
AAC60115       111 --------------KTTAPS---------KMTRFPPLPVTSDSVRTKCREMLIAVLQTDG-------DHVAIGADCELLA 160 African clawe...
P52652         119 --------------KRPEPSsrpeivaqfASASFPPKHLENDETRLKSAQLLLSALR-FG-------DMPQGTLDPEELA 176 Caenorhabditi...
AAA34580       125 --------------KYVSTKpr------nSKNDGVDTAIYHHKLRDQVLKALYDVLAKES-------EHPPQSILHTAKA 177 baker's yeast
P49373         110 --------------KQSSSGqr------tFKSDNVNVNVTDDKIRNNCIGLMYNALVIDS-------DESSSLIIAKAKE 162 Schizosacchar...
TIGR:At2g38560 167 idyrgqavkdekvsKDNQSSmkapakaanAPPKLTAMLKCNDPVRDKIRELLVEALCRVAgeaddyeRESVNASDPLRVA 246 thale cress
1PQV_S         178 IESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQ 257 Saccharomyces...
AAC60115       161 AQIEEVVFRELQNTDMKYKNRIRSRISNLKDSKNPDLRKNVLCGIITPEQIAIMSCEEMASNELKEMRKEITKASIQEHQ 240 African clawe...
P52652         177 VQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATMTSEEMASAEIREMRDKFTKEAILEHQ 256 Caenorhabditi...
AAA34580       178 IESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQ 257 baker's yeast
P49373         163 IDAQVLAR-AAGKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASEDRRKEDAKLEQENLFHAQ 241 Schizosacchar...
TIGR:At2g38560 247 VSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRKQENNQIKEKALFDCE 326 thale cress
1PQV_S         258 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKFS 309 Saccharomyces cerevisiae S288c
AAC60115       241 MGKTGGTQSDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 292 African clawed frog
P52652         257 MSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWKFC 308 Caenorhabditis elegans
AAA34580       258 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKFS 309 baker's yeast
P49373         242 GAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRWKFS 293 Schizosaccharomyces pombe 972h-
TIGR:At2g38560 327 RGLAAKASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWKFC 378 thale cress
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