Conserved Protein Domain Family
C_LFY_FLO

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pfam17538: C_LFY_FLO 
DNA Binding Domain (C-terminal) Leafy/Floricaula
This family consists of various plant development proteins which are homologs of floricaula (FLO) and Leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development. LFY is a plant-specific transcription factor (TF) essential for flower development. It is one of the few master regulators of flower development, as it integrates environmental and endogenous signals to orchestrate the whole floral network. Transcription factors such as LFY, recognize short DNA motifs primarily through their DNA-binding domain. Upon binding to short stretches of DNA called cis-elements or TF binding sites (TFBS), they regulate gene expression. This entry represents the DNA binding domain found in C-terminal of LFY proteins in plants. Structure-function studies have demonstrated that LFY binds semi-palindromic 19-bp DNA elements through its highly conserved C-terminal DBD, a unique helix-turn-helix fold that by itself dimerizes on DNA.
Statistics
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PSSM-Id: 407531
Aligned: 3 rows
Threshold Bit Score: 351.222
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ERN06132     207 EEGSSGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYDECRNFLIQVQALAKERGEKCPNKVTNQVFRHAKRAGASHIN 286
XP_012856831 221 GGGGGGSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGANYIN 300
XP_003580435 217 AGGVGGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRLFLLQVQSMAKLHGQKSPTKVTNQVFRYAKKVGASYIN 296
ERN06132     287 KPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYHPLVAMSRHHhAWDVDALFASHPSLAIWYVPTKLRQL 366
XP_012856831 301 KPKMRHYVHCYALHCLDEDTSNALRRAFKERGENVGAWRQACYKPLVAIAARQ-GWDIDAIFNAHPRLSIWYVPTKLRQL 379
XP_003580435 297 KPKMRHYVHCYALHCLDEAGSDALRRAYKARGENVGAWRQACYAPLVDISARH-GFDIDAVFAAHPRLAIWYVPTRLRLL 375
ERN06132     367 CHADRHSVTN 376
XP_012856831 380 CHAERSCAAA 389
XP_003580435 376 CHQARSAHAH 385
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