6BDC


Conserved Protein Domain Family
TssD

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pfam17642: TssD 
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Hemolysin coregulated protein Hcp (TssD)
T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. These tube and trans-envelope sub-assemblies are linked via TssK. This entry comprises family members such as the inner tube protein Hcp (TssD). Hcp proteins form hexamers that stack to form the inner tube/needle structure of the puncturing device. Other functions have also been described for Hcp proteins, for example, some Hcp proteins have been shown to have a chaperone function in that they bind to and stabilize effectors. In addition, there are 'evolved' Hcp proteins that have the Hcp domain at the N-terminal half of the protein and a toxic effector function present in the C-terminal portion of the protein.
Statistics
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PSSM-Id: 435939
Aligned: 77 rows
Threshold Bit Score: 110.327
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6BDC_A         2 SFLTSLTV-AGKDYKVLNVSYDLAQETDA-SGRPSTVTRGGRIXIEVESTGSTELF-EWXTNNFERKDGSVKFIKRDSNA 78 
WP_014223290   2 SFIAKLQLqNEEEISVLRCGFRFNQTIDV-TGKAASRPMGGTINIILSSINHPSLF-EWMINTQQKKSGKITFIRYDTMS 79  Niastella koree...
OAB81686       2 SIQSKLIV-DDRVSNVLKWNFAFDQKADY-NNRPSGNPIFKGISITLEADKNTDLM-EWMISPNMTKQFELHLTPTTFIS 78 
WP_013870669   2 SIQAKLLI-DDLEVNILDFNFTINRKSLN-NVTPTNLPVFKGINMVIESRKDLNLS-SWSFSKNETKQLQIHIYSRINNG 78  Lacinutrix sp. ...
WP_013995247   2 SFLAKLFI-NGRRINVLDTDIHFDQNIDPyTFKPTSLPQGGIFTVTVEADGTTDILaLAL-ARDTMCSGYIRFYNRGGMS 79  Zobellia galact...
CAZ95742       2 SFLAKLFI-NSRIINVLDTNIQFYQQVDSdNFKPASLPMGGVFSLTIEADGATDLL-GLALSPDTMCEGYIRFYKRGGMA 79 
WP_068593366   2 SFKAKLFI-EDQERNILDAHLLYHRFSDL-NGKPTSKPIGGPLEFTIESTGNDSLFyENMFSPTVQCQGEIIFYKRDGFS 79  Cochleicola gel...
WP_042506629   2 SFKAKLYI-EGQERNLLNSVLVYSQIADY-NGRPTQLPVSEPLQLAFESTKDDELFyNYMFHPDRMFKGYIRFFKRDGFQ 79  Algibacter lectus
WP_014164870   2 SFLAKLEL-DGNTYNILSCDYNFTQQIDA-TGKPEGMPQGGEINIRIESNGKSNLL-QWMLDHSQTKNGTIIFFRRDAMS 78  Flavobacterium ...
WP_014165945   2 SFLAKLEL-DGNMYNILECKYNFTQSIDN-TGKPQGMPQGGEIFIRIESTGNPDFL-DWMLDHNKSKDGRIIFYRRDAMS 78  Flavobacterium ...
6BDC_A        79 TLKeLKFTEAYXVKYKENFDHNSEnpLTETFXISARKIS-XG-GGEFDNAWV 128
WP_014223290  80 KLKtLEFENALCVDYHETFDPVGEhpITLQLTLSAHTIK-LE-DMVFKNNWP 129 Niastella koreensis
OAB81686      79 KTRkLLFNDAHCIEYKLNYNSDTKrpLSIELFITAAGFKdSLtGAEHSEYWR 130
WP_013870669  79 KIRkLYLFDCHLVNWNTKFSSVSNepMHETLGISCGGVKdSNsDTEYSAYWR 130 Lacinutrix sp. 5H-3-7-4
WP_013995247  80 KLTdYEFFDTYVVSCQRNYDDLST--AKDTYVFSPGILR-IG-DMVFEKPWK 127 Zobellia galactanivorans
CAZ95742      80 KLVdYEFFDTYIVNYRRNYDGTCGkvTTDQYVFSPGILR-IG-DMVFEKWWK 129
WP_068593366  80 TLFkIEFANAHFLGLEENFSASGDepLYMNITIGWGIIK-VR-GVVFEEYWN 129 Cochleicola gelatinilyticus
WP_042506629  80 KDFdIEFANAHIINLYEHFSSTGDdpMYMHIIISYGISR-VR-GTIHEKKWN 129 Algibacter lectus
WP_014164870  79 KLQeLKFEKAYCVSFSEYFDAKSTepLQIALRLMAKRFV-LN-EAAHEKKWK 128 Flavobacterium columnare
WP_014165945  79 KLQeLQFEKGYCIFFEEHFTSESKepLQISIRIVAKNFD-VN-GVSHDKKWR 128 Flavobacterium columnare
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