2QBU,2E0K


Conserved Protein Domain Family
Precorrin_2_C20_MT

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cd11645: Precorrin_2_C20_MT 
Click on image for an interactive view with Cn3D
Precorrin-2 C20-methyltransferase, also named CobI or CbiL
Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.
Statistics
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PSSM-Id: 381172
Aligned: 308 rows
Threshold Bit Score: 133.402
Created: 2-Feb-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:SAM binding site [chemical binding site]
Evidence:
  • Comment:SAM = S-adenosyl-L-methionine
  • Structure:2QBU; Methanothermobacter thermautotrophicus precorrin-2 C20-methyltransferase CbiL binds S-adenosyl-L-homocysteine, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #                                                                           
2QBU_A         8 VGVGPGDSELLTLRAVNVLRSVPVICAPRSsseresialsivedilterrdgCRILDPVFPMTddrde-leshWDSAARM 86  Methanothermoba...
Q7TV64        19 VGVGPGDPALLTLAAIEAIEAATVVAYPVArqggkgmaas---iasrwirveQRQLQLLFPMVaaaep-rqqaWRAASDQ 94  Prochlorococcus...
WP_096476993  12 AGLGPGDPELLTLKALRALERADYIFAPCPsatrpslaas--iitaaspaleGKIIKLVFPMSanpse-lalaWQEAEET 88  Dehalococcoides...
SIO63108      14 VGVGPGDPDLLTLRAVKVLERCAVIFHPGPrndsgfalg----vvvpllrsdQVIRGAELAMRrgpdd-gtvgYERVAQR 88  Singulisphaera ...
OAI47043       5 IGVGPGDPELLTLKAVRLMQQADVIYHAGPepdrgralet---vrvllrpdqPRRIVLRTGMSdvkptewrryYRAGVDE 81  Planctomycetace...
ABE10880      36 VGVGPGDPSLLTIAAVDAIKKAKVIVFPVSddnkksfaa----eivkkytkfKKNIPIIFPMArkdfd-pneiWSNAVEK 110 uncultured Proc...
WP_023275244   8 VGLGPGDYEMITLKAKKVLEESDIIFLSGGkvfngydevk---klldnincgSKLKFYEYPENkndr---qahIKHFAVE 81  Mucispirillum s...
WP_052656846   7 VGLGPGDPDLITVKGYKILMDADLIYYPYTsfkyaeni------lislgidkKKMQPLEFPIRsldl---lkkIRENACR 77  Acidiplasma
WP_011178234   5 VGLGPGDPDLLTIKGYKAIMSADYIIYPESslniayni-------ikklgppGRIIPMRLEMNg---------QDINNNI 68  Picrophilus
GBD42252      11 VGTGPGDPDLLTLAARRLLERVDAVWAVAAagtrprald----vvrphlrpdLPVRVFELGMRagege-kadfYAALAEE 85  bacterium HR39
Feature 1                       ###  ###                        ##   #                           
2QBU_A        87 VAAELEDGRDVAFITLGDPSIYSTFSYLQQRie--dmGFKTEMVPGVTSFTACAATAGRTLvegdEILLVVPrv---dDR 161 Methanothermoba...
Q7TV64        95 LATAVAAGERVVVLCQGDVSLFATSSYILLAlkkhhpDCQVRLIPGVTAVAAAAAAGNWPLamqqEQLLLLPtpd-qsSE 173 Prochlorococcus...
WP_096476993  89 IAGYLLQGHNCVFATEGDPLLYGTFSYISPRlagrinEPPFKYIPGISSPFAAASATGLPLtlgeDKLAILPatc-giEQ 167 Dehalococcoides...
SIO63108      89 LAHEARQGRPVAFLTEGDPMLFGSGSYVAAQlrsiapDVPVEIIPGVSASSAAAARLGWPLaqkdEILTICPgty-hsDE 167 Singulisphaera ...
OAI47043      82 IAADARAGRKVVFITEGDPTLYSTAAYVWQLlaelhpDIPIEVVPGVSSVTAAAARLQWPLaqrdEPLLIVPgsy-haAQ 160 Planctomycetace...
ABE10880     111 IVKFIQNGESVVLLCLGDTSLFASSSNILRLiknnhaEIITKTIPGISSISAAAALNDFDLvkkgETLIIKEcps-teSE 189 uncultured Proc...
WP_023275244  82 TVKYLEKGMKVSYVTMGDMTIYSSFPDIYKEla--khNVVLKAVTGISSFFAPASLTGNSIvdwkDKAAIIPnpe-dyKE 158 Mucispirillum s...
WP_052656846  78 IKNSLEFYDSVVYAVEGDPMLYSTFLDLYRYl-----DCKVRFIPGISSINAAAAIFGIPMaekdEIFTIIPavn-dyEY 151 Acidiplasma
WP_011178234  69 ELIKRLSERNTVYAVEGDPMLYSTFKELYNI------NINYEIIPGISSINAAAASLKLFLgtgsDIINIIPgin-dyKK 141 Picrophilus
GBD42252      86 AERVSGLGEEVALLCLGDPLFYGTAARVLRFld---pDIPVRIHPGVNAVALACARLAVPLal-gEEVVVVTpatlpdAR 161 bacterium HR39
Feature 1                         ##                        # ##                     ####    
2QBU_A       162 FErvl----rdVDACVIMKtsrHGRRAMEVVESdpr-gkdVVSVANCSMDDEVVErgfa-----sggGYLATTLVR 227 Methanothermobacter...
Q7TV64       174 LEvlledaagsGRVLALLKlahRWAWVRPMLEErnl-lqsALFAQHLGWPDQQVLqasev--petakPYFSLLLVR 246 Prochlorococcus mar...
WP_096476993 168 IEqal----gsFEAVALLKvsaIYPRIISLLKEkgl-lekCSLVCHASSPQQQIIsgeeal-knicpPYFSILLIR 237 Dehalococcoides mcc...
SIO63108     168 IGail----drGGPVCWFKaaaVLPRLVEELRRrdg-lnrAALIERIGHPDERVFldisqa-llvdlSYFSLVLVR 237 Singulisphaera sp. ...
OAI47043     161 LPawl----eaFPAICVMKpakALPEIAATLQGrc----eIAYVEEASTPQEWLTqdlgq--aigrqNYFSLVLLR 226 Planctomycetaceae b...
ABE10880     190 FTtlireskasKTVLAIMKvgkRWNLVREILKKedi-intSLIALSVGMPDQIIQyasqy--kkefmPYFSLILIR 262 uncultured Prochlor...
WP_023275244 159 IEnil----esFAAVIIMKisdNGKVLKEYLDKcinkpstAYAVFNAYTEKQKIYdlmkefpynteeFFMSVVMIK 230 Mucispirillum schae...
WP_052656846 152 MKkmi----mgTKNGAIIKaigAKDVLKKLLDDehl--kkYYIMENVSLKSQKIYnnin-----didSYMALVILK 216 Acidiplasma
WP_011178234 142 LKgli----dnSDTSIILKprmCLEALKNLLASgn---ynYYIIENISSENERILksid-----didKYMTVVVIK 205 Picrophilus
GBD42252     162 LRall----evADVLVVLKvggHLRRLKALLAEygr-lesAWLAAELSGEGEAIWrldad--apltaPYMSLVIAR 230 bacterium HR39

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