6XYW


Conserved Protein Domain Family
At5g63150_CTD
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cd23699: At5g63150_CTD 
C-terminal domain of Arabidopsis thaliana At5g63150 and similar proteins
At5g63150, also known as mS38, is a component of the small subunit (SSU) in RNA-rich Arabidopsis thaliana mitochondrial ribosome (mitoribosome). Thi model corresponds to the C-terminal domain of At5g63150.
Links
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Statistics
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PSSM-Id: 467912
Aligned: 22 rows
Threshold Bit Score: 44.2879
Created: 27-Apr-2023
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
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RNA binding
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:6XYW; Arabidopsis thaliana mS38 interacts with RNA, contacts at 4A
Download Cn3D for Viewing 3D StructureScroll to Sequence Alignment Display
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1            ##############  # ###     
6XYW_BB      108 IYADSVKKKRKKKMNKHKYRKLRKQLGRKS 137 thale cress
NP_001235406  90 LWADSVKKKRKKKMNKHKYQKLRKRMRRQT 119 soybean
XP_005537665 126 MDCASVLKKRKLKMNKHKHRKRRKQNRHKN 155 Cyanidioschyzon merolae strain 10D
KFH62869     218 MYMTSVLRKRRIKMRKHKYKKLRKRTRALR 247 Podila verticillata NRRL 6337
KIV87023     353 MYAISVKRQRRLKMKKHKYRKLMRKTRNIR 382 Exophiala sideris
KXN69721     185 YVMSSVLRKRKVKMNKHKYSKLRKRTRALR 214 Conidiobolus coronatus NRRL 28638
GAX94904     114 YYADSVLKKRRKKMNKHKHRKRRKALRMRT 143 Pythium insidiosum
PRW05871     106 LWADSVRRKRKRAMNKHKHRKRRKLNRMSS 135 Chlorella sorokiniana
GBF87328     166 MYADSVKRKRVKKMAKHKLRKRRKLERTYD 195 Raphidocelis subcapitata
SDA05208     478 VQLDSTRRKRKKMITKHKYKKRRKAQRALR 507 Microbotryum saponariae

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