Conserved Protein Domain Family
RRM_AtNSRA_like

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cd21618: RRM_AtNSRA_like 
RNA recognition motif (RRM) found in Arabidopsis thaliana nuclear speckle RNA-binding protein A (AtNSRA) and similar protein
AtNSRA is an alternative splicing (AS) regulator that binds to specific mRNAs and modulates auxin effects on the transcriptome. It can be displaced from its targets upon binding to AS competitor long non-coding RNA (ASCO-RNA). Members in this family contain an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 410197
Aligned: 19 rows
Threshold Bit Score: 106.964
Created: 19-Feb-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
A1A6K6        133 DASNTLYVEGLPsNCSRREVAHIFRPFvGYREVRLVTKdskhrngdpiVLCFVDFTNpaCAATALSALQGYRMDENEsds 212  thale cress
CAK64598       30 ESTHSLYVDGIPnDAQEREVAHIFRPYpGFQRVRLIKKqtqk--greyLLCFVDFDDalQATIVMQTLQGYRFDKNDk-- 105  Paramecium te...
EFN57435      424 DACNTLYIEGLPsDVTRRELGHIFRSReGFRSLRLVIKdskkhvgeklVMAFVEYSStyFAAQAMDTLQGYPFDLDNpet 503  Chlorella var...
KXZ45301      503 DATHTLYLDNLPpDVTRRELAHIFRHYaGFQGLRLVIKdnpar-tdksVKLFVDYVDalAATAAMKGLAGYVLDTESdss 581  Gonium pectorale
PRP80407      368 EASSTLYVEGLPlDATEREVAHIFRQWpGYQSLRILQKdgklftgrtyNLCFVEFDNkhQATLAMQHIQGYRIDKNDn-- 445  Planoprotoste...
XP_004347094  232 DAAPTLYVEGLPlDATEREVAHIFRQMpGYLGIRIKPKeskqhpsrvfNLCWVEFETkyNAAVALHHLKGYKMDKNDt-- 309  Acanthamoeba ...
CDW88634      323 NATNTVYVEGIPlDASEREVAHIFRPFpGYKSVRLIPRekrp--gekvIFCFADFENafQTTLVINTLQGYRFDKDD--- 397  Stylonychia l...
GAX80431      634 NATRHLVVDGLPaDILKREVAHIFRPFhGFQGLRLVTKerpgrlgvrvTKAYVDFDDvgAATAALELIQGYVLDMDEsds 713  Chlamydomonas...
XP_005645165  138 EANPTLFLSGLPlKITKREVAHILRPCeGFKELRLVQKvdrn--nkdvMWCFAEFSSkqLAARAMNDLQGYAVDLDDqds 215  Coccomyxa sub...
PNW88333      431 DATASLYIDKLPlDVTRREMSHIFRNLtGFKAFRLVFKdtar---eksVKCFVDFADvqTASHALKALSGYQLDTDLess 507  Chlamydomonas...
A1A6K6        213 kFLRLQFSR 221  thale cress
CAK64598      106 tGLKIYFAN 114  Paramecium tetraurelia strain d4-2
EFN57435      504 mTFFVKFAR 512  Chlorella variabilis
KXZ45301      582 pVLRPAYAR 590  Gonium pectorale
PRP80407      446 kGIVITYAK 454  Planoprotostelium fungivorum
XP_004347094  310 kGLTISYAK 318  Acanthamoeba castellanii str. Neff
CDW88634      398 -ILGLQFSY 405  Stylonychia lemnae
GAX80431      714 vVLRPKYIK 722  Chlamydomonas eustigma
XP_005645165  216 pTLRISYAR 224  Coccomyxa subellipsoidea C-169
PNW88333      508 mIIFPEYAR 516  Chlamydomonas reinhardtii
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