3SWN


Conserved Protein Domain Family
LSm7

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cd01729: LSm7 
Click on image for an interactive view with Cn3D
Like-Sm protein 7
The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric ring around the 3'-terminus uridylation tag of the gamma-methyl triphosphate (gamma-m-P3) capped U6 snRNA. LSm2-8 form the core of the snRNP particle that, in turn, assembles with other components onto the pre-mRNA to form the spliceosome which is responsible for the excision of introns and the ligation of exons. LSm1-7 is involved in recognition of the 3' uridylation tag and recruitment of the decapping machinery. LSm657 is believed to be an assembly intermediate for both the LSm1-7 and LSm2-8 rings. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet.
Statistics
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PSSM-Id: 212476
Aligned: 42 rows
Threshold Bit Score: 108.442
Created: 10-May-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 35 residues -Click on image for an interactive view with Cn3D
Feature 1:hexamer interface [polypeptide binding site]
Evidence:
  • Comment:This oligomerization interface is flexible and plays a role in both the hexameric arrangement of assembly intermediates and the hetero-heptamer
  • Structure:3SWN, Schizosaccharomyces pombe LSm5-7 hetero-hexamer, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            # #  ##    # ###  # #    ######## #                           # # ##########
3SWN_C        26 KESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRnped-------gkltGAIRKLGLVVVRGTTLV 98  Schizosaccharom...
AAW46688      23 RESILNLAQFVDKSIRVKFMGGREATGILKGYDQLMNLVMDDVVEEYEd-------------gRPTRSLGLVVLRGPNIV 89  Cryptococcus ne...
AAP80816      16 QKVILDLSKYSDKDVIVRLAGGRQVRGVLKGWDPLLNLVLDEVVEQLRdvdds------yrlsGKERKLGLVVVRGTSVM 89  Griffithsia jap...
XP_636181      9 KESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRdaedp------littDEKRFLGLVVCRGSSVM 82  Dictyostelium d...
EDU43454      42 KENILDLSKYMDKQITVKFSGGREVIGTLKGYDQLMNLVLDEVKEALTdde----------gnIRYRKLGLIVARGTLLV 111 Pyrenophora tri...
CBQ71097      53 KEAILDLSKYMDQKIRVKFAGGREVFGTLKGFDQLMNLVMDEVTESLRddeg--------nvtDKTRNLGLVVLRGTALT 124 Sporisorium rei...
EGF81154      12 KENILDLTKYSNKKIIVQFQGGRQVAGILKGYDPLSNLVLDDAEEFIRdssdp------svltGETRKIGLVVTRAPPMV 85  Batrachochytriu...
XP_002141023   3 SKSILDLSKFINKEIRVKICGGRDVTGILRGYDGVTNIVLDDTKEFLLdpedl------tnttSEQRDLGLLVVRGTSIL 76  Cryptosporidium...
NP_014252     24 REAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSnpdden---ntelisKNARKLGLTVIRGTILV 100 Saccharomyces c...
XP_002683245   4 RENILDLNQYISKQVLVKFIGGREVYGTLRGFDNMINLVLEDCYEFIRdlqdhhnrqtdennkQYVRKLGIVICRGTSLM 83  Naegleria grube...
Feature 1        ####           
3SWN_C        99 LIAPMDGSEEIPNPF 113 Schizosaccharomyces pombe 972h-
AAW46688      90 LVSPTDGSSGKSFLK 104 Cryptococcus neoformans var. neoformans JEC21
AAP80816      90 TVSPVDGVEQIENPF 104 Griffithsia japonica
XP_636181     83 MVCPTEGCEPIDNPY 97  Dictyostelium discoideum AX4
EDU43454     112 VISPVDGSEEIPNPF 126 Pyrenophora tritici-repentis Pt-1C-BFP
CBQ71097     125 VINPADGFESIENPF 139 Sporisorium reilianum SRZ2
EGF81154      86 LISPFDGTEETEDPF 100 Batrachochytrium dendrobatidis JAM81
XP_002141023  77 MIAPLDGSEYIENPF 91  Cryptosporidium muris RN66
NP_014252    101 SLSSAEGSDVLYMQK 115 Saccharomyces cerevisiae S288c
XP_002683245  84 HLCPVDGTEEIENPF 98  Naegleria gruberi strain NEG-M

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