1IRU


Conserved Protein Domain Family
proteasome_alpha_type_6

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cd03754: proteasome_alpha_type_6 
Click on image for an interactive view with Cn3D
proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Statistics
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PSSM-Id: 239723
Aligned: 33 rows
Threshold Bit Score: 313.402
Created: 12-Jun-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitealpha subunit
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                  #               # #                  #             
1IRU_A      8 GFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLdss------tvTHLFKITENIGCVMT 81  cow
AAG28527    5 GFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMrpe------tiTSLYNVNDNTGVCIT 78  Trypanosoma brucei
BAB62241   22 DYERFITLFSPEGRLCQLDYAFNAVKLAGITSVGVRGDDSVYVLTHRKEDKLHDpt-------tiTNLFAITDRIGLLAT 94  Japanese rice
NP_178641   8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLdqs------svSHLFPVTKYLGLLAT 81  thale cress
EAA16012    8 MYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSLGVKGENCAVIISQKKMATQYItqdklldynniTNIYNISDEIGCSMV 87  Plasmodium yoelii ...
XP_626785   8 LHDRHITIFSPEGKLYQIEYTFRAVKNSNITAIAIKGKDTVCIVCEKKVPNQQGqqdklldpayvTSLYKVRKHIGAVML 87  Cryptosporidium pa...
XP_769396   6 GFDQALTVFNPEGKLFQVEYAFRAVKTSGLSHVAIRCLDGVVLVSQLQSADRLVdta------nnTFIHEINETSACMIC 79  Giardia lamblia AT...
EAR92119    3 GSETQITVFSPEGRLFQVEYAQRAVKNSGITTIGVRGKDCVVLITEKKTQESYVdmn------sfTNIHTVSERVGAATT 76  Tetrahymena thermo...
NP_704478   8 MYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSVGVKGENCAVIISQKKMATQYIsqdklldynniTNIYNITDEIGCSMV 87  Plasmodium falcipa...
XP_953033   8 GYDRHITIFSPEGKLFQLEYALKAVKNCNLTGLAIKDDSAIAVVAQKKLPAQQGnqdvlldtssvTSLYHITDEIFALLV 87  Theileria annulata...
Feature 1                                                                                     
1IRU_A     82 GMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQnAEMRPLGCCMILIGIDee--------------- 146 cow
AAG28527   79 GRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQqAGMRLMGTIMTFVGMEqnded------------ 146 Trypanosoma brucei
BAB62241   95 GMPGDGRAIAQEARNAAAEFRFKWGYKMSPCMLAQWIADRAQIRTQhAQIRPYGVVSMIFGIDeek-------------- 160 Japanese rice
NP_178641  82 GMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQhAYMRPLGVVAMVLGIDee--------------- 146 thale cress
EAA16012   88 GMPGDCLSMVYKARSEASEYLYNNGYNLNVETLCRNICDKIQVFTQhAYMRLHACSGILIGMNed--------------- 152 Plasmodium yoelii ...
XP_626785  88 GLAPDCRSIISKCREIAGKFAFEKGVEIPVSYLSHKIADVNQLYTQhASMRLLGASGMFISIDde--------------- 152 Cryptosporidium pa...
XP_769396  80 GRIADGRRVIDRVRSEAVDFFRKWNYQPTADILCTRLADINQIYTQeAWQRPFGNIAVFAGWDpeq-------------- 145 Giardia lamblia AT...
EAR92119   77 GYYPDSKAIVTRLRQEASEYKLKNGHFMPVDQLSCRLGDLSQVYTQkAFMRPYAVETILAGYDne--------------- 141 Tetrahymena thermo...
NP_704478  88 GMPGDCLSMVYKARSEASEFLYSNGYNVNAETLCRNICDKIQVYTQhAYMRLHACSNIYIYIYmnictcvfiflhkcvkc 167 Plasmodium falcipa...
XP_953033  88 GLPGDCLSILYKARQVALDYSYKYGINIPASVLCQKISDLNQVYTQhAYMRLHACTGLILSIEpd--------------- 152 Theileria annulata...
Feature 1                                     #                                               
1IRU_A    147 ---------qgPQVYKCDPAGYYCGFkATAAGVKQTESTSFLEKKVKkkfdw----------------------tfeqTV 195 cow
AAG28527  147 -------gawiPQIYCVDPAGGAAVH-ACAVGKKQIEACAFLEKKQKnapfht--------------------lsqkeAA 198 Trypanosoma brucei
BAB62241  161 ---------gtPELFTCDPAGQFFAHkATSAGPKEKEVMNFLEERMKskpsl----------------------ssgtTK 209 Japanese rice
NP_178641 147 ---------rgPLLYKCDPAGHFYGHkATSAGMKEQEAVNFLEKKMKenpaf----------------------tydeTV 195 thale cress
EAA16012  153 ---------nkPELYKFDPAGFCAGYrACVIGNKEQESISILERLLEkrkkkiqqe--------------tieediqnTI 209 Plasmodium yoelii ...
XP_626785 153 ---------dgPSLYKIDPAGYFASYrACAVGTKEREGNNALEKIIKnepln----------------------sceeVI 201 Cryptosporidium pa...
XP_769396 146 ---------drSLLFKTDPAGTNTGYfAIAVGVKEVELADALTVQVKsfpngi-------------------cestqkGL 197 Giardia lamblia AT...
EAR92119  142 ---------lgPLLYKNDPSGYFCGYrAVASGIKEQDAIHQLEKEFKkdknat-------------------smsfdkTI 193 Tetrahymena thermo...
NP_704478 168 gmiigidennkPELFKFDPSGFCAGYrACVIGNKEQESISVLERLLEkrkkkiqqe--------------tidedirnTT 233 Plasmodium falcipa...
XP_953033 153 ---------vgPKIYKFDSSGWFAGYkACGIGAKEQESENALEKTLKrreamslqdamksnlhvntevhqlsqgqetkVT 223 Theileria annulata...
Feature 1                                
1IRU_A    196 ETAITCLSTVLSIDfk--psEIEVGVV 220 cow
AAG28527  199 MIALAALQSALGESlr--asGVEVGRC 223 Trypanosoma brucei
BAB62241  210 GLAKSALKHVLEGDfy--arEFELGFI 234 Japanese rice
NP_178641 196 QTAISALQSVLQEDfk--atEIEVGVV 220 thale cress
EAA16012  210 ILAIEALQAILAFDlk--anEIEMAIV 234 Plasmodium yoelii yoelii
XP_626785 202 SASIDCLKTLLGVDfk--aeDIEVGVV 226 Cryptosporidium parvum Iowa II
XP_769396 198 DCALKIFQNVISTGlt--gdDVEVAIY 222 Giardia lamblia ATCC 50803
EAR92119  194 EVAINTLKNILNREfn--ptDIEIGVV 218 Tetrahymena thermophila SB210
NP_704478 234 ILAIEALQTILAFDlk--asEIEVAIV 258 Plasmodium falciparum 3D7
XP_953033 224 IEALRCMIDIDAFTkglgasSIEVAVA 250 Theileria annulata strain Ankara

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