Conserved Protein Domain Family
YbjD

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COG3593: YbjD 
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair]
Statistics
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PSSM-Id: 442812
Aligned: 383 rows
Threshold Bit Score: 80.8166
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011043227   1 Mkis-----------------fiDIQNFRKL------Q-S---------------------CR-I-NL----S-DKETLL 28 
AKM79678       1 Mryk-----------------kfLIQNYKAI------K-K---------------------AT-I-ELt---D-DGLVLL 29 
WP_010871669   1 Melk-----------------svKLNKFKRF------E-S---------------------AE-L-KT----N-GKLIAL 28 
WP_012081006   1 Mklr-----------------sfRVTNFRSI------I-D---------------------TGwV-NF----StDGITIL 30 
WP_012407178   1 Mylk-----------------tvFIRFYKSFnddfirKnNnkvkpkpwe---kidnafypyIE-V-PL----D-PKITTI 53 
WP_014437065   1 MpehneaeidgragdspillkaiYVRFYKSFnfdylkKsQtsarprawe---mfrdewfphVR-I-SL----E-KEITTI 70 
WP_072624489   1 Mrik-----------------tlYVRFYKSFnydylrKsDtrsvpdpwdvvdeedsrffpfVQ-I-SL----E-RDISTV 56 
WP_126440491  44 Mrlf-----------------sfQIRNFRSI------V-Dtg------------------eCK-LsEV------DNIVVL 74 
WP_054047121   1 Mhir-----------------evLIRWYKSFnydyerKaNprserkpwq---ettdgwlphVR-I-SL----E-DDITAV 53 
WP_077075775  12 Mkfv-----------------rfNFENFKGI------R-K---------------------LT-F-ELnqspS-SNVYTL 43 
WP_011043227  29 VGANNSGKTSATDVLITF---LDQKVKRP-FS-VT---D-----F----TLsnwkplNEyamswtkdidsiqgtsieewq 91 
AKM79678      30 LGINESGKTSVLLAIESF---DHT----------N---DptdenLklkrYKq----iRNkreit---------------- 73 
WP_010871669  29 IGANESGKTSILEAIQC----LDD--DKA-FS------Dv---fFtr--------dlSEpeq------------------ 66 
WP_012081006  31 VGQNESGKTSILEALSKT---FNN--QDE-IT-SD---D-----L----RIg-----ADl-------------------- 66 
WP_012407178  54 VGANESGKSHLLSAIEKA---ISGNN----IErS----D-----Fc--rYShff-tvKQn-------------------- 94 
WP_014437065  71 VGANESGKSQLLRAIEIA---LSGDG----IKhE----D-----Fc--rYSpff-saKTgmm------------------ 113
WP_072624489  57 VGANESGKSQVISAVKCL---LTGDG----IErR----D-----Fc--rYSeml-vvDKema------------------ 99 
WP_126440491  75 AGQNESGKTAILEALDYF---RNGp-SEKfLK------------Fqmrig------------------------------ 108
WP_054047121  54 VGANESGKSHLLDAVHIV---LTGRN----HSqN----D-----Fc--rYStlf-svEKdqr------------------ 96 
WP_077075775  44 VGLNESGKTTILEAISNFdpnLERg----pIEkPEktiDndpnaFlp---------lSEranf----------------- 93 
WP_011043227  92 klcP--SI-----DIWLdasinevekvahliptlkwsgeplgvrlvlqpknldelkahfvseytaanniksispkgtlsl 164
AKM79678      74 -gvseaKIt---aEIQMekndqkriketlltdgfldkdrerefqellkivgvikicrkfvyqdaefnqvv---------- 139
WP_010871669  67 ---devII-----EATYmlseednesilfydplrvakkflilkrangkrnfkiepdiifndqyrkeiinktlqfienify 138
WP_012081006  67 ---PavKI-----QVELdegelneelkefdsaevdvfkrackehagkitvrfgwkkndettegfiatvgleegsftstfd 138
WP_012407178  95 ------ELkypdfGTEWsdlskseevslrkiieipeniifdrflvfrrnisniivylpekgdyrpy-------------- 154
WP_014437065 114 ---akpEF-----GVEMhnaneleaqyfgkkqeasstrsgriyfftgqgagldlyragedgfeevk-------------- 171
WP_072624489 100 ----vpEF-----GGEFgdltdderevvrgllgadadipcdsfwmfrfnkrvtvygrqaasgatapvwls---------- 160
WP_126440491 109 --saftEVi---cKFTLenndakllgkseneykdivdkliglkisfirryeknpttsitateetneiinnvlqe------ 177
WP_054047121  97 ---lfpEV-----GAVFaltesdvealaslkiplqangellmlrpspgsvevldasevrvvled---------------- 152
WP_077075775  94 --gkaiTIg---aELEFesedieelnkylninkkyseikdvtntiyrrfynfenskfkdinrtwspgfkvserndp---- 164
WP_011043227 165 wprdikdylskgklntqfevkayildpeksnspqklrkeqssmefypfdgifkvdvieaqrgfsdpnsseikqsNGG--- 241
AKM79678     140 ---------------------yelldngkkflsllkgeinedavcksilkispsvqyfedfkdqipefispvpgAQYydl 198
WP_010871669 139 edqdfdnell---nnivtegreiilqlqtslndkrnkdrhngekwqvphevpnvlvmedqkklelwielieefldfnqgt 215
WP_012081006 139 ll-------mkthsekkaqeafvistiqslasnlvaageggvrnesaekdsshtksvaishfdialaiyniaptATLfd- 210
WP_012407178 155 --------------------------rigerqvselqsllpeilriesdvalpssvpikklvhlgqekyldsrrFELldr 208
WP_014437065 172 ------------------------------------ldakkaasfrkllprtirlreqaelpdtlsvrflvdgeaeqvps 215
WP_072624489 161 ---------------------ktltdtqiekitlptffeiqanvplpssvpleyltaaktkrpafsregrlrffRTLfdd 219
WP_126440491 178 -----------------------------efeflcdengdkkpverqeqesnlseedsslkleklrnqiieniiklipaf 228
WP_054047121 153 ---------------------------------------dqikgldgllphahllktqvdlpdsvsiswlaqtesvlasr 193
WP_077075775 165 ---------------------------kgtgvnlyekdkktwieldkicnkripdivyfpnflfdfpsriylsidilstd 217
WP_011043227 242 -----LSGQLNQYY-------------------Nrhlnp--------------------tdlpdVADLEALE-------T 270
AKM79678     199 dwvntLEGLFYH----------------------------------------------------ADPKLSISaf----eA 222
WP_010871669 216 nnekhLKELSDSAKkllk------------yenSslings-------------------ieiiyKRRPKALLfd---deS 261
WP_012081006 211 ----sVSGLLPKTVd-------------------------------------------------IDEKNQLVgd----gA 233
WP_012407178 209 ---eqRNRIVDALDefsdnpelvtkvrlfwgenKdvvdpdaietmksiisaldeavfslnekerRDKETNLAyklickiA 285
WP_014437065 216 rltreSRRLIEAEGegakla-------laaydaSkktspaaaipaav----knlvdaiqyeersKEADMRLArdlllkaA 284
WP_072624489 220 ---ikIFETTDALTkaaekvv------ttyasyAgvt------------------------dddLRARLELAekllfdvG 266
WP_126440491 229 slysdFSDLLPSEIsvtn-------------------------------------------lnnNNAVKDFQkvfsv--- 262
WP_054047121 194 krrceLFQFLAGLNtlelvttqaag----------------------------lfglltaardfETEQQKLGrllltkvA 245
WP_077075775 218 ekeefYKKLIQDILy------------------------------------------------sLDINVTIEeh------ 243
WP_011043227 271 ---------IDNake------lfDIRLN-------KS----F-K-EALGE-------------IK-------TLGYPg-f 301
AKM79678     223 ---------IKDdvar----ktlERRVNn-----------kLnK-QFTQRwn----------kLKg-----vKTi----- 257
WP_010871669 262 rkipsffsiITQntnkekivakpDKALAnl---------lkLaKlDLNELfkslgnlqksqmlLNranqtivDFfnskws 332
WP_012081006 234 iaaq-nflkIADlqld----tliKSDLRsrthlinRAn-----Q-QISSD-------------FA-------TFWSQtig 282
WP_012407178 286 q--------VDTnal-----ldlAGAIKkg----mQGyangIiE-KINRQ-------------LSinl-nfpNYwv---- 329
WP_014437065 285 g--------IDAkaf-----gevMRSVEgn----kEGyadgVmS-TINRE-------------LDecl-dfpNVwa---- 328
WP_072624489 267 r--------IDKssf-----velQKAVEags--gaEGwangLvR-KMNAQ-------------LSdal-nfpKWws---- 312
WP_126440491 263 -----dlleLSKisd------prNRSIRir---evEE----VaSdDFNRSws---------qtISsl------------k 303
WP_054047121 246 r--------IDAsaf-----rdlQKAIAde----eEGlvnaLvQ-EMNRS-------------IGrhl-nisKWws---- 289
WP_077075775 244 --------lINRiksd---nendKSNLRri---------iqLmEdKVTNVi------------FEsw----yKMfk---k 284
WP_011043227 302 N-DPD--IKL----SSRINP-IDSLDH-DAAI-IFdtqkrgftgLDN-FSLPEKYNGLGYKNLIFIVF---KLI-SFrdq 366
AKM79678     258 -hQADl-IYLk----------TEQLFT----F-QIv-------gADRaTVFSVDERSKGALWYFTFLLk-tEFR-KRkl- 310
WP_010871669 333 QsNSQy-LKLylh-------------gnTLRI-SIe-------tNKG-SSFNIDERSQGFRQFVALTCf-lEVE-HL--- 384
WP_012081006 283 r---kdqLQLqcemEVYGTDtPEKVGK-SYLVfWI---------SDGlTRLYPHQRSQGVRWFVSFYLq-lKAS-EK--- 344
WP_012407178 330 -qDRN--FCL----KVMARDy-------DLVF-TIt-------dRTG-TEYSFEERSQGLRYFLSYYI---QYR-SHep- 381
WP_014437065 329 -qDKD--FRI----ELSLREt-------DLAF-VIr-------dRTG-TTYSFDERSSGLKHFLAYYA---QYL-THvn- 380
WP_072624489 313 -qDAE--FSV----YLTLRDf-------DLIF-TVr-------dRTG-QEYSFGERSSGMSYFLSYFV---RYR-SHv-- 363
WP_126440491 304 KeEKKysYSL----EIENGEp------kKIIF-MIv-------gNDG-NPLYLEQKSLGFRWFSAFHLrlrALMeEEkq- 363
WP_054047121 290 -qDED--FQL----RVSPREh-------ELVF-TIr-------dRTG-TDYSFSERSRGLTYFLSYYV---QLR-SHdr- 341
WP_077075775 285 EvKASr-IKIes--------gEDSIKGaYLEF-YIe-------sSDGv--YNVKDRSLGFRWFFTFLLf-tQFR-PYrp- 342
WP_011043227 367 wlrkgkaqkrrnaddiaIEPI--HLVLIEEPEAHLHAQVQQVFIRKAYDVLRldv--snkLTTQMIVSSHSSYIAHEAG- 441
AKM79678     311 ---------------raQTGK--TLYLIDEPGSNLHSSAQTNMREDFKTLAS---------DSNVIYTTHNQYLIDTTN- 363
WP_010871669 385 --------------------DvlPILLIDEAELHLHYDAQVDLMKVLEKQSI---------AKKVIYTTHSIGCLPED-- 433
WP_012081006 345 -----------------LKSK--RLFLLDEPGANLHSKAQGDVLKLINQLSK---------DIPIVYSTHSPHMIEYSR- 395
WP_012407178 382 ----------------hPNKT--EILLMDEPDAYLSSQAQQDLLKVFDLFAIpaqgshltHPIQVVYVTHSPFLIDKNH- 442
WP_014437065 381 ----------------pDGRP--EVLLMDEPDAYLSASAQQDLLKILDDFSNggl---grpKMQVLMVTHSPYLIDKNK- 438
WP_072624489 364 ----------------pSGNQ--EILLMDEPDTYLSMQGQQDLLRIFADFAAped--pnvAPIQVLYVTHSPFLIDKNH- 422
WP_126440491 364 ----------------eEKNG--FILLIDEPAQNLHEIAQKDVKRILEETSK--------TGIQIIYSTHNPNLIGIENn 417
WP_054047121 342 ----------------pEGvP--EVLLMDEPDAYLSALGQQDLLRVIEDHARped---tnrTDQVVYVTHSPFLINRNA- 399
WP_077075775 343 ----------------dSKKG--LIFLFDEPASNLHSSAQNQLLKHFENFGN---------KVTIIYTTHSHYMINPNw- 394
WP_011043227 442 -FE-KLRYFKR-----KPALGldqvaTAEVvdlstvfksnsnktddvTVTAKF---VARYLKT-IH-CD-LFFA-----N 503
AKM79678     364 -LS-STYITET-----SGGVIkatkySQYLqgr-----------svkTSYFQP---LLDAIKV-QP------FSleipwE 415
WP_010871669 434 -LgvgIKLVET-----QREQL-----ERSIiennfw-----ikwkkkELGMTP---ILFGLGA-AQ-MS-YI-Ai----R 486
WP_012081006 396 -LY-RIHAVQR-----DGDAVd---sPTVVvdahr-------lgtasTDTLSP---VLTAMGV-DLsSQqVIkK-----K 449
WP_012407178 443 -AE-RIRVLRK-----GNEDEg----TRVVkd-------------aaKNHYEP---LRSSIGA-YV-GEtAFIG-----N 488
WP_014437065 439 -AH-AIRVVDK-----GAMAEg----TRVVsn-------------asRNHYEP---LRSSIGA-FT-AEtAFIG-----N 484
WP_072624489 423 -GE-RIRVLEK-----GEGDEg----SRVVen-------------aaKNHYEP---LRSAFGA-FV-AEtTFIG-----N 468
WP_126440491 418 eLT-RIRLIS------NEEKT-----GTKIenitqy------isrknRGNMETlspIRVAMGLiNI-HS-IFdS-----N 472
WP_054047121 400 -GH-RVRVVDK-----GTRQEg----TRQVkd-------------atQNHYEP---LRTSLGA-FI-AEtAFIG-----G 445
WP_077075775 395 -LE-STYVVKNggfnvESSEDdv-pnSTNVtvehyrtf--vsknpkeTSYFQP---VLDILEYv--pSE---L------E 455
WP_011043227 504 GI---IMVEGAAERMLIPHFIRTHy--ND--S----LN--QNYI--SILEVGG-AhAQRLRPLIDALSL-P-T-LVITDT 564
AKM79678     416 KT---LICEGIYDYIAYSIAFEDLl--GK-----------KLGF--SIIPGEGaSsLSPLISLSIAWGS-K-F-LVLLDR 474
WP_010871669 487 PA---LFGEGISEVIILPTIFRQI------------IK--KENLgfQI--IGGlSeTNQ-YALLDGQAP-K-V-VYVTDY 543
WP_012081006 450 NN---VLLEEMSGFYYLSAFWQ--------------LAkvEQEA--HFIAATGvNkIQNLANLFRGWGL-D-F-IVAMDD 507
WP_012407178 489 CN---LMVEGISDQILIAGATTYLranGAp-Nle-tLD--LNQI--TIVQSGSaShIPYLVYLARGRDVeQpAvIVLLDS 559
WP_014437065 485 CN---LFVEGISDQVYIAGVNRVLasm--mkDslrqLN--LNSM--TIVPAGSaShIEYLLHLARGRDIeKpAaLVLLDS 555
WP_072624489 469 CN---LMLEGQADQVLLAGLSSLArrlGTk-Dt--tLD--LNTL--TLVPAGGaEhIPYMVYLARGRDVdKpAvTVLLDS 538
WP_126440491 473 QYn--IVVEGITDHYYLSAFREMLq--------------kDERL--KFIPACGvEnVVHLVSVLLGWGC-N-Y-KAVFDD 531
WP_054047121 446 DN---LFIEGISDQVLIAGMNARLrrkGTapSe--cLD--LNQV--TLVP-GG-SnVPYMLYLARGRSQyKpAcAVLLDS 514
WP_077075775 456 KIpscVFLEGKNDFYTLKYFNEVIl-----nN--------EVKI--NLMPAFGaStMDALISMYMGWGK-K-F-IILLDG 517
WP_011043227 565 DA-TKSkdsnekirpekgknygfgsdtlkewfdlksktldE-VVELDE 610
AKM79678     475 DE-Egveqaerysgnfkifkdkiltlgdiaklakqnfevedlfsvrdk 521
WP_010871669 544 DR-AGDef------------------------------kkK-LEENGI 559
WP_012081006 508 DS-QARtafnamkremygds------daeadanmvkfkgcKgiedvfs 548
WP_012407178 560 DN-SGNea------------------------------kkQlLGKGGQ 576
WP_014437065 556 DP-EGKqv------------------------------arA-LKrggk 571
WP_072624489 539 DD-EGNrq------------------------------aaE-LRRGYR 554
WP_126440491 532 DPqQGRkvyn---------------------------dlkKyFYEEND 552
WP_054047121 515 DK-AGRta------------------------------qaQ-IKKGGT 530
WP_077075775 518 DK-EGNeqkhrylkkfgkfvssviftlkdidqkwenksledlfqssea 564
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