1VKD,3WAS,5AY9,5AYD


Conserved Protein Domain Family
GH130

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cd08993: GH130 
Click on image for an interactive view with Cn3D
Glycosyl hydrolase family 130
This subfamily contains glycosyl hydrolase family 130 (GH130) proteins, as classified by the carbohydrate-active enzymes database (CAZY), are phosphorylases and hydrolases for beta-mannosides, and include beta-1,4-mannosylglucose phosphorylase (EC 2.4.1.281), beta-1,4-mannooligosaccharide phosphorylase (EC 2.4.1.319), among others that have yet to be characterized. They possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Beta-1,4-mannosylglucose phosphorylase is involved in degradation of beta-1,4-D-mannosyl-N-acetyl-D-glucosamine linkages in the core of N-glycans; it produces alpha-mannose 1-phosphate and glucose from 4-O-beta-D-mannosyl-D-glucose and inorganic phosphate, using a critical catalytic Asp as a proton donor. This family includes Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1) and beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2), enzymes that phosphorolyze beta-mannosidic linkages at the non-reducing ends of their substrates, and have substantially diverse substrate specificity that are determined by three loop regions.
Statistics
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PSSM-Id: 350107
Aligned: 80 rows
Threshold Bit Score: 324.807
Created: 7-Jun-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitechemical
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: active site [active site], 4 residue positions
Conserved feature residue pattern:N D Y DClick to see conserved feature residue pattern help
Evidence:
  • Comment:conservative active-site residues (invariant sites among close relatives of 4-O-beta-D-mannosyl-D-glucose phosphorylase/MGP)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #                                                                        
1VKD_A     51 PKGARVFNSAVVPYn-gEFVGVFRIDhk-----------------ntRPFLHFGRSKDGINWEIEpeeiqwv-dvngepf 111 Thermotoga maritim...
3WAS_A     66 IGMNATLNAGAIKWd-gKYLMLVRVEga-----------------drKSFFAVAESPNGIDNFRFweypvt---lpedvv 124 Bacteroides fragil...
AEJ60368   68 LGINAVFNAGAIKFd-dTYYLMCRVEgh-----------------drKSFFALAESSDGIHFTFTtpvli------pdvp 123 Spirochaeta thermo...
EIQ00580   64 VPCSAVFNCGAVWHd-gRALLLLRAEdm-----------------arDNAFYVATSEDGIRFDIErepihyp-lrdtekr 124 Opitutaceae bacter...
KPK48979   24 WPCTGAYNPGCVKTpdgTYALAFRADeftdvnadqieklgvtpaaeqGGSIALALSDDGITFEVHpepvl-----tplpd 98  Planctomycetes bac...
KPK61872   24 FPCYAVFNAGATRFg-dRFLLVLRVEdl-----------------rrRSDFCVATSEDGFRFEVRpepivyp-lrevekr 84  Planctomycetes bac...
KPK66376   26 WPCHMAYNAGVVRFg-gRYAMLFRNIywner------------ygksTRSVGRAFSDDGITWDVDpdfr-------fkpe 85  Planctomycetes bac...
OGV54993   20 FDAYTVFNAGTARYk-gKILLLLRIEtt-----------------erKTVFHVATSSDGIKFKVSkdpinyplseleklg 81  Lentisphaerae bact...
SDU29472   25 YGCDKVYNPAACRLg-dEIVLIVRTDrad----------------epRQCLGLARSRDGIHFTVEkepil-----vpapd 82  Verrucomicrobiacea...
PCJ62287   30 FECMRCFNPAAFRFn-nKYCLLIRVMdf-----------------qkNESFAFADSEDGINFKVKkdfqm-----lpset 86  Planctomycetes bac...
Feature 1           #                                                                         
1VKD_A    112 QPSYAYDPRVVKIED--TYYITFCTDDh------------GPTIGVGXTKDFKTFVRLPNAy--vPFNRNGVLFPRKING 175 Thermotoga maritim...
3WAS_A    125 PATNVYDMRLTAHEDg-WIYGIFCAERhddnapigdlssaTATAGIARTKDLKNWERLPDLkt-kSQQRNVVLHPEFVDG 202 Bacteroides fragil...
AEJ60368  124 GETNLYDMRLTLHEDg-WIYGIFCAERkdpdapptdtssaVARAGIARSKDLVHWERLPDLvtpsPQQRNVVLHPEFVNG 202 Spirochaeta thermo...
EIQ00580  125 WLHNRFDMRITPMPDesVYYVTHASWLgg----------yGSCIGISKTTDFRDFEAVGELs--vPSNRNAALFPQKIRG 192 Opitutaceae bacter...
KPK48979   99 EGGSIYDPRLTIIDG--TYWITYATSTd-----------rGIMNGIARSRNLHDWERVHRTl---PDNRNALLFPEKVGG 162 Planctomycetes bac...
KPK61872   85 YGSHRFDMRITQMDG--VYYCYHAMWIgp----------lHCTIGLATTTDFVHFEPWPGCs--vPSNRNAVLFPEKIGG 150 Planctomycetes bac...
KPK66376   86 GITNPEDPRMTVCEG--RIYVTFTENCr-----------dGIRGCIAVTDDLESYELLSMSa---PDNRNMIIFPEKVGG 149 Planctomycetes bac...
OGV54993   82 NRAHRFDMRITPMDG--TFYVCHAVWLdp----------wGSCIAIAKTDDFVNFKQISMSv---PSNRNAVLFPEKING 146 Lentisphaerae bact...
SDU29472   83 EFGNLNDPRVTFVEG--WYYLVYCNDPsgpg-----lreeGIHICIARSRDLRRWERIYKSq---PDNRNAVIFPRKIGG 152 Verrucomicrobiacea...
PCJ62287   87 DEGRMNDPRVTKIDD--TYYIFYCSDPk-----------sGIKIGIKKTKDFETFEDIYYSl---PDNRNAVLFPEKING 150 Planctomycetes bac...
Feature 1                                                                                     
1VKD_A    176 KYVXLNRPsdngh---tpfgDIFLSESPDx--iHWGNHRFVLGRSSynwWENLKIGAGPYPIETSEGWLLIYHGVTltc- 249 Thermotoga maritim...
3WAS_A    203 KYALYTRPqdgfid-tgsggGIGWALIDDithaEVGEEKIIDKRYYh-tIKEVKNGEGPHPIKTPQGWLHLAHGVRnca- 279 Bacteroides fragil...
AEJ60368  203 KYLLYTRPqegfid-tgsgaGICYGFCDSmehpVVNEEHLLDSKVYh-tIKEVKNGAGAPPVKTPAGWLHVAHGVRgta- 279 Spirochaeta thermo...
EIQ00580  193 RYARLERPqdid-----gggRIWVSYSPDl--iHWGEARPVVLPDAp--WARCKTGAGAIPIRTEHGWLCIYHATSknc- 262 Opitutaceae bacter...
KPK48979  163 LYVRLDRPfghifs-rgrgfDMWIGYSPDm--eFWGRHKLVLRAEDv-pWGKVKVGPSTPPIRTDEGWLALFHGVEmrep 238 Planctomycetes bac...
KPK61872  151 NYARLERPelpg-----ggsRIWYSESPDl--tYWGNSRPLDMPHLa--WGHMKTGAGAIPIRTDEGWLEIYHGVGvtc- 220 Planctomycetes bac...
KPK66376  150 KFVRLERPfraygmrgddkyDTWFSDSPDc--rYWGNTQLVLRANDl-pFCNWKNGPSGQPIKTEKGWLTIFHATHydpd 226 Planctomycetes bac...
OGV54993  147 KYIRLERPqnid-----gsgSTWTSESNDl--iHWGNPRPVKIPCTd--WSNRKNGPGCIPIKTAEGWLEIYHGTCmta- 216 Lentisphaerae bact...
SDU29472  153 LYARLDRPfrrgyr-aehghDLWISYSPDm--eFWGRHRLVLSHYDv-eWGHHKIGPSAPPVWTPEGWLTLFHGAEcdpg 228 Verrucomicrobiacea...
PCJ62287  151 YYVRLQRPfsrwyy-ldrgyDIWISSSPDm--eFWGRHKKVLSYTDv-aWGNNKIGPGPQPIKTDKGWLVIYHGVEgpdg 226 Planctomycetes bac...
Feature 1                       #                                                             
1VKD_A    250 --------------ngyVYSFGAALLDLDDPSKVLYRSRYYLLTPEEEYEt-vGFVPNVVFPCAALCDadTGRVAIYYGA 314 Thermotoga maritim...
3WAS_A    280 --------------aglRYVLYMYMTSLDDPTRLIASPAGYFMAPVGEERi--GDVSNVLFSNGWIADd-DGKVFIYYAS 342 Bacteroides fragil...
AEJ60368  280 --------------aglRYVLYAFLTDREDPTKVIARPGGFLIAPEGEERv--GDVSNVVFSNGMIADe-DGRLLIYYAS 342 Spirochaeta thermo...
EIQ00580  263 --------------ateNYYLGVMLLDLERPDRVVAAPRQFILQPETPYEc-mGQVPNVVFTNGAVVMp-DGTLNIYYGG 326 Opitutaceae bacter...
KPK48979  239 dk----------fgwpfTYRTGIMLLDLEDPSEVIGMCPDPIMEPTEDYEn-iGYRSHVVFPGAMIPEa-DGTVKIYYGA 306 Planctomycetes bac...
KPK61872  221 --------------ssnNYYLGAMLLDLEEPWKIVAAPESYILAAEKDYEc-mGQTPNVVFTSGAVETe-DGKLYVYYGC 284 Planctomycetes bac...
KPK66376  227 teypt----wrsenwhkLYCAGVMMLDLEEPWKIVGISQDPLMVPEEPYEt-dGFRSYTLFPSATLLQd-DGTVRIYYGA 300 Planctomycetes bac...
OGV54993  217 --------------steNYYLGACLLDLKDPSKVLAAPRKFILAAEETYEc-vGQVPNVVFTGGACEMd-DGKLNIYYGG 280 Lentisphaerae bact...
SDU29472  229 gegwlpwvaphgsypgkVYRAGAMLLDLEDPSKIIARRREPLLCPVAPYEidpYYRPNVVFPCGIIEEd-DGELKIYYGA 307 Verrucomicrobiacea...
PCJ62287  227 td----------tawkkTYRAGIMLLDLEDPSKVLACPDAPLLSPEEDYEtdpTYRPNVIFPTGVIEKe-DGGINLYYGA 295 Planctomycetes bac...
Feature 1      #              
1VKD_A    315 ADTHVALAFGYIDEIV 330 Thermotoga maritima MSB8
3WAS_A    343 SDTRMHVATSTIERLV 358 Bacteroides fragilis NCTC 9343
AEJ60368  343 SDTRLHVAETTIERMV 358 Spirochaeta thermophila DSM 6578
EIQ00580  327 ADTRVCLAQTRLADMV 342 Opitutaceae bacterium TAV1
KPK48979  307 ADQCVALATARLDDLI 322 Planctomycetes bacterium SM23_25
KPK61872  285 ADHRMALAIGEVDELV 300 Planctomycetes bacterium SM23_32
KPK66376  301 CDTVLALATAQLDDLI 316 Planctomycetes bacterium SM23_32
OGV54993  281 ADTRICLAQTTVKELV 296 Lentisphaerae bacterium GWF2_50_93
SDU29472  308 SDTHVAMATVAKGDLV 323 Verrucomicrobiaceae bacterium GAS474
PCJ62287  296 ADNSIALAETTKDALL 311 Planctomycetes bacterium

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