1WRB,2DB3,5E7I


Conserved Protein Domain Family
DEADc_DDX3_DDX4

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cd17967: DEADc_DDX3_DDX4 
Click on image for an interactive view with Cn3D
DEAD-box helicase domain of ATP-dependent RNA helicases DDX3 and DDX4
This subfamily includes Drosophila melanogaster Vasa, which is essential for development. DEAD box protein 3 (DDX3) has been reported to display a high level of RNA-independent ATPase activity stimulated by both RNA and DNA. DEAD box protein 4 (DDX4, also known as VASA homolog) is an ATP-dependent RNA helicase required during spermatogenesis and is essential for the germline integrity. DDX3 and DDX4 are members of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350725
Aligned: 61 rows
Threshold Bit Score: 359.493
Created: 10-Aug-2017
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:2DB3; Drosophila melanogaster Vasa with bound MgANP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #                 # ###  #                 #######                             
1WRB_A        24 NFDELKLDPTIRNNILlaSYQRPTpIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLvcqdlnqq---rysktay 100 Dugesia japonica
2DB3_A        57 HFTSADLRDIIIDNVNksGYKIPTpIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLledphe-------lelgr 129 fruit fly
Q9NQI0       289 TFEEANLCQTLNNNIAkaGYTKLTpVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMmhdgitas---rfkelqe 365 human
BAD99523     305 SFDAAGLRPKILDNIKksGYTQPTpVQKWAIPVIMKKRDLMACAQTGSGKTGAYLIPIINRLieegcaas---sydetqt 381 Artemia francis...
XP_018914792 194 SYEASGLRPLLLDNIKkmKYTTPTpIQKYSIPIVMAKRDLMACAQTGSGKTAAFLLPVIHDLlenpadssggggygqaie 273 Bemisia tabaci
ACZ92304     195 TFQEMNLRNVLLENVSkaEFPRPTpIQKYSIPILMNQRDLMACAQTGSGKTAAFLLPMLHYIlendiesh---sfedvaq 271 green mud crab
XP_015786368 279 TFEEAFTSETILNGLKqtKILKPTpIQKYGMRIVMAGRDLMACAQTGSGKTLAFILPILQDLfndkslqt--nygqtpqt 356 two-spotted spi...
Q4JG17       262 SFQSMNLRPLLLENIVkaGYGCPTpVQKYTIPNVMNGRDIMACAQTGSGKTAAFLLPMLHYIldnncpsn---afeepaq 338 Pacific white s...
AGF90963     155 SFEDMDIRRILLENIQkaKYKKPTpIQSAAVPILLGGRDIMACAQTGSGKTVAYLLPMLNYMlkescnsh---smeetar 231 Exopalaemon car...
EFX80250     328 SFEEAGLRPLLLQNIKnsGYVKPTpVQKGSIAVILAKRDLIASAVTGSGKTAAYLVPVMNILleqgisgg---shgmvqk 404 common water flea
Feature 1                                                                                        
1WRB_A       101 PKCLILAPTRELAIQILSESQKFSlntpLRSCVVYGGad-tHSQIREvqmGCHLLVATPGRLVDFIEKnkiSLEFCKYIV 179 Dugesia japonica
2DB3_A       130 PQVVIVSPTRELAIQIFNEARKFAfesyLKIGIVYGGtsfrHQNECIt-rGCHVVIATPGRLLDFVDRtfiTFEDTRFVV 208 fruit fly
Q9NQI0       366 PECIIVAPTRELVNQIYLEARKFSfgtcVRAVVIYGGtq-lGHSIRQivqGCNILCATPGRLMDIIGKekiGLKQIKYLV 444 human
BAD99523     382 PEAVVMCPTRELAIQIFKEAVKFSydtiIKPVVVYGGvaprYQSDKVk-sGCNILVGTPGRLIDFMNRgvfNFSACKFLV 460 Artemia francis...
XP_018914792 274 PLAVVMAPTRELAIQIYENAKIFVrgsaVQAQVAYGGthvsTQKSRIa-rGCHILVATAGRLNDFLERgfiTFNSCRFFI 352 Bemisia tabaci
ACZ92304     272 PVGLVLAPTRELAIQIFQEARKFSlqtvIKNSCIYGGvatnFQLRRMkeqGCHIIIATPGKLLFFLGMgkiSLKSLKFLV 351 green mud crab
XP_015786368 357 PSAVIVTPTRELAVQIYRELYKYSkgsiVKSQIIYGGtsvgHQRAKLs-eGVHILVGTVGRILDFLDRdvfNFSNLKYFV 435 two-spotted spi...
Q4JG17       339 PTGLVICPTRELAIQIMREARKFShssvAKCCVAYGGaagfHQLKTIh-sGCHILVATPGRLLDFLEKgkiVFSSLKYLV 417 Pacific white s...
AGF90963     232 PTGLVLCPTRELAVQIYYEARKLSfgstLLNRFAYGGtavfHQLKQIm-pGCHLLAGTIGRVVDFMEKgklSFEDLKFLV 310 Exopalaemon car...
EFX80250     405 PEVVILAPTRELAIQIHREAYKFAynsvLKSVLIYGGtvssNQRSNLq-aGCNILVATTGRLKDFLDRgvfDFSAVKFLI 483 common water flea
Feature 1         ##                                   #                           
1WRB_A       180 LDEADRMLdMGFEPQIRKIIEESNmps-giNRQTLMFSATFPKEIQKLAADFLY-NYIFMTVGRVG 243 Dugesia japonica
2DB3_A       209 LDEADRMLdMGFSEDMRRIMTHVTmr---pEHQTLMFSATFPEEIQRMAGEFLK-NYVFVAIGIVG 270 fruit fly
Q9NQI0       445 LDEADRMLdMGFGPEMKKLISCPGmps-keQRQTLMFSATFPEEIQRLAAEFLKsNYLFVAVGQVG 509 human
BAD99523     461 LDEADRMLdMGFMGEVKKVVYHGTmpv-kvERNTLMFSATFPNEVQELAAEFLE-NYIFVTVGTVG 524 Artemia franciscana
XP_018914792 353 LDEADRMLdMGFLPNIEKCLHHPSmeplkeERTILMFSATFPQEIQKLAQRFLR-NHLFLSVGIVG 417 Bemisia tabaci
ACZ92304     352 FDEADRMLdLGFIDDMEKLVAHPDmpp-kgERLTMMFSATFPEEVQRCALRFLD-NYLFLVAGQVG 415 green mud crab
XP_015786368 436 LDEADRMIdQGFLPDVRKMMAHPTmpp-keARQTLMFSATFAEEIQRVAGEFLVpNYLFLTVGILG 500 two-spotted spider mite
Q4JG17       418 LDEADRMLdMGFLSSIKTVINHKTmtp-taERITLMFSATFPHEIQELASAFLN-NYLFVVVGTVG 481 Pacific white shrimp
AGF90963     311 LDEADRMLsMGFLPDLKKIFQHPSmpp-ceQRQTLMFSATFPSEIQNLAASFMN-PYVFVVVGNVG 374 Exopalaemon carinicauda
EFX80250     484 LDEADRMLdMGFGPDIEKIAAHPTmpp-kgIRRTCMFSATFPEEVQALAANYME-DYIFVTTGTVG 547 common water flea

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