4EY3,4F06,4EVS


Conserved Protein Domain Family
PBP1_RPA0985_benzoate-like

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cd20013: PBP1_RPA0985_benzoate-like 
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs
This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Statistics
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PSSM-Id: 380666
Aligned: 26 rows
Threshold Bit Score: 473.666
Created: 14-Dec-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:4EY3; Rhodopseudomonas palustris solute binding protein of ABC transporter (RPA0985) binds P-hydroxybenzoic acid, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                               ###   
4EY3_A      8 KVGLIVPXTGgqasTGKQIDNAIKLYIkkhg-dtvaGKKIEVILKDDaa-ipDNTKRLAQELIVndKVNVIAGFGITpaa 85  Rhodopseudomonas p...
4F06_A      7 KVGVIGTXSGpyalFGKNYKXGIDAWVaehg-nkvaGHTVEFVYRDEvspnpAQSKALAQELIVkeKVQYLAGLYFTpna 85  Rhodopseudomonas p...
4EVS_A      7 KVGVIGTXSGpyalFGQNFKXGIDAWVaehg-nkvgGHTVEFVYRDEvspnpAQSKALAQELIVkeKVQYIAGLYFTpna 85  Rhodopseudomonas p...
OVZ57627   29 KVGLLSQFSGaytwWGKEYQRGVDLYLaqrg-gkfgEHTVTVVSRDEagsnpQRARQLSQELVVrdKVQYLIGGVFTptv 107 Pigmentiphaga sp. ...
SMF12048   32 KVGILGSFSGpyasWGVQFRNALDLYQeqhq-skaaGHDVELIYRDVggnepARAKQLAQELVVrdGVQYIIGLEFTpti 110 Rhizobium oryzae
OJU89955   29 KIGILGPFSGpfahYGVLFKAGAQAYLasqg-gklaGKDVELIYRDTggpnpGQTKTLAQELLVrdKVDYLGGVVFTpna 107 Burkholderiales ba...
SIR46041   28 KVGSVLALTGpfasMGEGVDRGAALYMklnrdklpkGVSIELIRRDNagpnpTAAKRLVQEMVVrdQIKYLTGAIFTpda 107 Bosea sp. TND4EK4
APH71880   32 KVGILSHDTGpfaqNGQGFHRGIEVYQalhg-ksagGREIEFVYRDIggpnpAVGKRLAEELIVreKVQILGGFALSsea 110 Mesorhizobium sp. B7
OCJ32846   26 KVGVIGQFSGpyalAGKQLRESIDVYVaqhg-tkagEHDVKFIYKDIggsnpALAKSLAEQLIVkdKVSILTGFFLSpea 104 Agrobacterium tume...
SEB12194   31 RIGVIGPFSGpyaaSGKQYRQGIEMYVqehg-skvnGRDVQIIYRDVggtspAAAREIAQELILkdKVSMLGGFYLSpea 109 Burkholderia sarti...
Feature 1                       ###              # #                         # #              
4EY3_A     86 lAAAPLATQAKVPEIVXAAGTSiiterspYIVRTSFTLAQSSIIIGDWAAkngikKVATLTSDYaPGNDALAFFKERFta 165 Rhodopseudomonas p...
4F06_A     86 xAVAPLLQEAKVPXVVXNAATSsitekspYIVRTSFTXFQNTVPAAKVAKqkgatKVAIAVSDYgPGIDAETAFKKTFea 165 Rhodopseudomonas p...
4EVS_A     86 xAVAPLLQEAKVPXVVLNAATSsitekspYIVRTSFTXFQNTVPAAKVAKqkgakKVAIAVSDYgPGIDAETAFKKTFea 165 Rhodopseudomonas p...
OVZ57627  108 lGAVDVINQTKTPYVILNSGTSsvtdksqYYVRAGFTQWTVSIPLVQWAYdqgmkNAVILAADYaPGHDALEAFGQTFtk 187 Pigmentiphaga sp. ...
SMF12048  111 lAVADIATEAEVPIINLNSGTSsvtraseFLTRTGFTQWQVAAPAGEYAFdqgkkTAVIVSADYaPGKDALDSFRYGFek 190 Rhizobium oryzae
OJU89955  108 mAIAPLITQSKTPMVIFNAATSsitekspYFLRTSYTLWQVTVPLAQWTAkngitKVATAVMDYgPGIDAETAWKAEFtk 187 Burkholderiales ba...
SIR46041  108 aAIAPLATEAKLPFILPNASTSsltrmspYIVRVSLTQWQLAYPMGEWAAkkgykTAYIVVADYaPGHDTQEAFTRAFvg 187 Bosea sp. TND4EK4
APH71880  111 lAVGPIVEQTKTPAITFIASSPsvlagsqYFLKSGQHIAQSSSAGATFARkqgaeKCYIVVSDYqPGYDAQKAFRKTFes 190 Mesorhizobium sp. B7
OCJ32846  105 aAVAPVISETKTPSVLSVSSAPqilrmsdYFVRAGQNIWQPAYAQADFAIdsgkkRAYIAVADYaPGHEVEEAFTRRFke 184 Agrobacterium tume...
SEB12194  110 sAVSSVITETRTPTVLFGASSPqvirqspYFVRVAATMWTSGVIAAEYGHkrsakTAYTIVSDYsAGRDIEDAFKQKFta 189 Burkholderia sarti...
Feature 1                                        #                                            
4EY3_A    166 ggGEIVEEIKVplanpdFAPFLQRXKDAkpdAXFVFvpa-gqGGNFXKQFAERgldksgIKVIGPGdvxdddllnsxGDA 244 Rhodopseudomonas p...
4F06_A    166 egGKVVEAVRXplsttdFGPIXQRIKNSgadXIFTFlpagppTLGFVKAYIDNglkaggVKLXSTGdvvtepdlpniGEA 245 Rhodopseudomonas p...
4EVS_A    166 egGSVVEAVRXplattdFGPIXQRIKDSgadXIFTFlpagppTLGFVKAYIDNglkaagVKLXSTGdvvtepdlpniGDS 245 Rhodopseudomonas p...
OVZ57627  188 lgGKVVGEIKVpmgttdFSSYLQRVRDLkpqAVFMFmpvgpmSAGMIRSFKEReldkagITLLVTNeaqee-diapiGDA 266 Pigmentiphaga sp. ...
SMF12048  191 kgGKILEEIKVplgttdFSTYLLRIQEAkpdVALVFmpvgpmSVGFLKAYVDRgllkagIDVYVGAevqet-dlpalGDA 269 Rhizobium oryzae
OJU89955  188 sgGTVVESIRMpmatndFAPFIQRIKASgaqAVYTFlpggppNLGFVKSYNENgla-kaGVQFLGTaemdefdlqkfGDA 266 Burkholderiales ba...
SIR46041  188 kgGQITGVLRIpqnvtdFAPYMQRIKDAkpdMVFMYin---sRIAALKAYEAAglkaagIQLMGPGdllnddempaiGTA 264 Bosea sp. TND4EK4
APH71880  191 egGQIVGEVRVplntvdFAAIVEGIASTetdCINVFvppgapAIGLLRALAERglv-esNFVVGMGeaedh-ilpqyDDS 268 Mesorhizobium sp. B7
OCJ32846  185 rgGEIVGHDRMplstvdFAAFAERIAGSnpdAVITFlpngapSVAFFNALAARgvn-knSMVIGIAetddp-dlplfGSN 262 Agrobacterium tume...
SEB12194  190 lgGRVIRSDRVplntvdYAAFAQRIADMkpdMVEMFlpagtpAISFLKAMGDRgll-ggKLIVIGNnetddpdlhlfPDS 268 Burkholderia sarti...
Feature 1                                             #                                       
4EY3_A    245 ALGVVTAHXYsaahp--saxnKEFVAAYKKEfgqr--pgfXAVGGYDGIHLVFealkktggkadgd-sliaaxkgxkwes 319 Rhodopseudomonas p...
4F06_A    246 GLGILSTYHYavshd--spenKAFLALLQKGgakldevtxTSVAAYDGARLIYkxieatsgksdpd-kaiaavkgxkwvs 322 Rhodopseudomonas p...
4EVS_A    246 GIGILSTYHYavshd--spenKAFLALLQKGgaklgdvtxTSVAAYDGARLIYkxieatggkqdpe-kaiaavkdxkwts 322 Rhodopseudomonas p...
OVZ57627  267 ALGLTSALHYspyld--tpinKEFVAAYKAKygkdelpsvASVAAYDGMRLIEqmvratngtkdgd-kamaaikdfkwds 343 Pigmentiphaga sp. ...
SMF12048  270 AVGIHSVFTYspyqd--npenTAFVEALTKKygakglpnlATVAAYDGLALVYhmieatkgkkdgt-aamdsikgltiqs 346 Rhizobium oryzae
OJU89955  267 ALGLKTAFHYsaahd--sdanRKFIAALAKQdkna-vanyASVGAWDGMHVIEkmiaatdgkkdge-kamaaaralkwes 342 Burkholderiales ba...
SIR46041  265 AEGVITGGIYtsnlvdpspqnVAFLKAWATEygadnkpsyLGVTGWDSMDMIFsaiaklgpdakpeaileflsnwksdsg 344 Bosea sp. TND4EK4
APH71880  269 VVGFKGALYYaeald--neenKTFIAKLKELygpdtqpdfASASAYDGAHLIYemvksqegkdwsgpdaveavkglswng 346 Mesorhizobium sp. B7
OCJ32846  263 IVGVYSAIFYtgslt--npenLAFKKIMSEKfgpqhrvgvNNASPYDAVELIYkmvaaqgdsfdpd-kamsavkgyewks 339 Agrobacterium tume...
SEB12194  269 VIGTYTASNYatgvg--nnvnEKLKSDLIAKygpeavpnfSMVGAYNGMELFYrmiaaqkgtmwnpdaamsavisytwvs 346 Burkholderia sarti...
Feature 1                                             
4EY3_A    320 PRGPISIDPetRDIVQNIYIRKVekvdgelynieFAKFDA 359 Rhodopseudomonas palustris BisB5
4F06_A    323 PRGEVSIDPetRHITQNVYLREVekvdgklinreLETFKA 362 Rhodopseudomonas palustris HaA2
4EVS_A    323 PRGPVSIDPttRHITQSVYLREVekqdgklinkeIETFKD 362 Rhodopseudomonas palustris CGA009
OVZ57627  344 PRGPVSIDPrtREIVQNVYMRKVekidgklgnkvFHTYPA 383 Pigmentiphaga sp. NML080357
SMF12048  347 PRGPVTIDAktRDIIQNVYLRVVekradgvlynkTLATQE 386 Rhizobium oryzae
OJU89955  343 PRGPVHIDPdtRHITQHVYLREVeriggvlvnkeIADFGD 382 Burkholderiales bacterium 66-5
SIR46041  345 ARGAISIDPktRDIVQSVVVNRMenidgkmmnrrIDVIPD 384 Bosea sp. TND4EK4
APH71880  347 VRGPMKIDPetRELVQNIYLREVqkvdgklqnaiVDQLEA 386 Mesorhizobium sp. B7
OCJ32846  340 PSGPKRIDPetREMNHNIYIRQVqdvdgqlqnvlIKTYEM 379 Agrobacterium tumefaciens
SEB12194  347 PSGPVKIGTd-RNMTQNMFVRQVtkengklvnsvVSESEG 385 Burkholderia sartisoli

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