2VDX,4C41,2V95,2VDY,4C49


Conserved Protein Domain Family
serpinA6_CBG

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cd19554: serpinA6_CBG 
Click on image for an interactive view with Cn3D
serpin family A member 6, corticosteroid-binding globulin
Corticosteroid-binding globulin (CBG, also known as transcortin) is encoded by the SERPINA6 gene in humans which encodes an alpha-globulin with corticosteroid-binding properties. It is produced in the liver. CBG binds several steroid hormones at high rates including cortisol, cortisone, deoxycorticosterone (DOC), corticosterone, aldosterone, progesterone, and 17a-hydroxyprogesterone. This family belongs to the clade A of the serpin superfamily, which includes the classical serine proteinase inhibitors, alpha-1-antitrypsin and alpha-1-antichymotrypsin, protein C inhibitor, kallistatin, and non-inhibitory serpins, like corticosteroid and thyroxin binding globulins. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.
Statistics
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PSSM-Id: 381022
Aligned: 20 rows
Threshold Bit Score: 616.31
Created: 11-Jul-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
reactive centercortisol
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:reactive center loop (RCL)
Evidence:
  • Comment:depending on the conformational state, the RC loop is surface accessible in the active form or buried and inserted as the central beta strand in the inactive form.
  • Structure:2VDY_A: Human corticosteroid-binding globulin RCL cleaved

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
2VDX_A         1 SNHHRGLASANVDFAFSLYKHLVALSPKKNIFISPVSISMALAMLSLgtcgHTRAQLLQGLGFNLTERSETEIHQGFQHL 80  human
2V95_A         3 SNSHRGLAPTNVDFAFNLYQRLVALNPDKNTLISPVSISMALAMVSLg---SAQTQSLQSLGFNLTETSEAEIHQSFQYL 79  Norway rat
2VDY_A         1 SNHHRGLASANVDFAFSLYKHLVALSPKKNIFISPVSISMALAMLSLgtcgHTRAQLLQGLGFNLTERSETEIHQGFQHL 80  human
Q60543        32 HDSHRGLAPTNVDFAFNMYRHLSTLDPHKNILISPVSVSMALAMMSLvavgSKKNQFFQDVGFNLTEISKEEIYQSFEKL 111 golden hamster
XP_004621842  32 RSPYRNLAPNNADFAFSLFKNLVALNPNKDILISPISISMALSMLTLgaggHTRSQMLNGLGFKVDEITETEIHKSFQHL 111 European shrew
XP_004621848  28 DEHYRRLAPYNADFAFRLFKNLATLDPNKDILISPLSVSMTLSMLTLgacnDSSSQLFHSLGFDLRELAELDIHESFQQL 107 European shrew
XP_012791221  35 NSPYQKLAPNNIDFAFNLFQYLQSVAPDENIIFSPISVSMALSMLALgadsQTGTQILQGSGFNHSEIPDSEIHQSFQEL 114 European shrew
XP_004434288  13 HSPLPNITPNLADLAFSLYRELAHQSNTTNTFFSPVSIAIAFVMLSPgtkgDTHIQIPQGLNFNFKETVQTDIHKGLQHL 92  southern white ...
B2D1U1        32 RTPHRDLAPNNVDFAFILYRHLVASLPGKNVFISPVSISMALAMLSLgargYTRVQLLQGLGFNLTKLSEAEIHQGFRHL 111 brown bear
P23775        11 RSPPRGLAPANVDFAFSLYRQLVSSAPDRNICISPVSVSMALAMLSLgasgHTRTQLLQGLGFNLTEMPEAEIHQGFQYL 90  rabbit
Feature 1                                                                                        
2VDX_A        81 HQLFAKsd-tsLEMTMGNALFLDGSLELLESFSADIKHYYESEVLAMNFQDWATASRQINSYVKNKTQGKIVDLFSGLDS 159 human
2V95_A        80 NYLLKQsd-tgLEMNMGNAMFLLQKLKLKDSFLADVKQYYESEALAIDFEDWTKASQQINQHVKDKTQGKIEHVFSDLDS 158 Norway rat
2VDY_A        81 HQLFAKsd-tsLEMTMGNALFLDGSLELLESFSADIKHYYESEVLAMNFQDWATASRQINSYVKNKTQGKIVDLFSGLDS 159 human
Q60543       112 SHLLSKad-ssLEMRMGNTMFLDQSLNMRDSFLTDIEHYHESEALTTDFKDGADAREHINRHVETKTQGEITHVFSDQDS 190 golden hamster
XP_004621842 112 HDLLRL-----SDMHMGSTLFHNQSLNLMELFSADTKRYYGLENLPVDFQDRARSSSQINEYIKDKTQGEISDLFLELES 186 European shrew
XP_004621848 108 SELLREsd-ssLKMSMGSTLFHNQNLDIMKEFPVDVQRFYGMGNLPLDFEALTTPSSQINEYLKEKTQGKTSDLFLEIES 186 European shrew
XP_012791221 115 YHLLGQsd-dnSEMNMGNALFFKQSLKLLDLYSEDLQHYYGLEKVPIDFKNWAKGSNQINEYIKSKTQGKISDLLSDLKD 193 European shrew
XP_004434288  93 LDSLNQpd-deLQLTTSNILLIDENLKQVHKFLEDVKRLFHSDALATDFQDWARARRQINEYLKNKTQGKIVDLFSELDS 171 southern white ...
B2D1U1       112 RHLFEKesdtmLEMAMGNALFLDRNLELLESFLADTKHYYEAEALAADFKDGAGASRQINEYIKNKTQGKIVDLVSKLDS 191 brown bear
P23775        91 HHLLGEsd-tsLEMTMGNALFLDHSLELLESFSADIRRYYESEALATDFQDWPRACRQINEYIENKTQGKIADLFLGLEN 169 rabbit
Feature 1                                                                                        
2VDX_A       160 PAILVLVNYIFFKGTWTQPFDLASTREENFYVDETTVVKVPMMLQSSTISYLHDSELPCQLVQMNYVGNGTVFFILPDKG 239 human
2V95_A       159 PASFILVNYIFLRGIWELPFSPENTREEDFYVNETSTVKVPMMVQSGSIGYFRDSVFPCQLIQMDYVGNGTAFFILPDQG 238 Norway rat
2VDY_A       160 PAILVLVNYIFFKGTWTQPFDLASTREENFYVDETTVVKVPMMLQSSTISYLHDSELPCQLVQMNYVGNGTVFFILPDKG 239 human
Q60543       191 PAPLTLVNYNVLKGMWELPISPENTRDEDFHVSENSTVRVPMMFQSGVIGYLHDSEIPCQLVQMQYLKNGTTFFILPDEG 270 golden hamster
XP_004621842 187 TVTIILINYVFFTGTWEHIFNPEDTRLGDFYVDDTTVVQVPMMFQSSNVKHMYDPELGCLVVQLDYVGNSTAFLILPDRE 266 European shrew
XP_004621848 187 PDTLILINYVFFSGTWEKAFNPEDTRLADFFLDDGSIVQVPMMFQSNEFKYLYDSRLECFVVQLEYIGSAAAFFILPNSK 266 European shrew
XP_012791221 194 PALLTLVNYISFTGTWKLPFHPDDTTEGDFFKKDNSVVKVPMMYQANNFNFLFDPLLGCISVMLDYVGNSTFYFILPDVK 273 European shrew
XP_004434288 172 PALLILVNYIFFKGTWVHPFNQKRTREENFYMNETTVMKVPMMFQSRAIKYLNDPVLPCRLVQLDYTHNGTVFFVLPDEG 251 southern white ...
B2D1U1       192 SAMLILVNYIFFKGTWEHPFDPESTRQENFYVNKTTVVRVPMMFQSGTIKYLHDRVLPCQLVQLEYLGNGTVFFVLPEEG 271 brown bear
P23775       170 PAILILVNYIFFKGTWAHPFDPQSTEEKSFYVDDTTTVMVPMMFQSSTVKYLHDPVLPCRLVQLDYVGNGTAFFILPDKG 249 rabbit
Feature 1                                                                                        
2VDX_A       240 KMNTVIAALSRDTINRWSAGLTSSQVDLYIPKVTISGVYDLGDVLEEMGIadlFTTQANFSRITQDaq-lKSSKVVHKAV 318 human
2V95_A       239 QMDTVIAALSRDTIDRWGKLMTPRQVNLYIPKFSMSDTYDLKDVLEDLNIkdlLTNQSDFSGNTKDv--pLTLTMVHKAM 316 Norway rat
2VDY_A       240 KMNTVIAALSRDTINRWSAGLTSSQVDLYIPKVTISGVYDLGDVLEEMGIadlFTTQANFSRITQDaq-lKSSKVVHKAV 318 human
Q60543       271 QMDAVTAALHRDTVERWDKLLTKRLVNLYIPRVYMSGTYNLEDVLEGMGItglFTNQTDFLDISQDpp-qKASKIVHKVM 349 golden hamster
XP_004621842 267 QMDTVSQALSRETLDRWASSMINSRVELYVPRLSLSGNYDLGDIMKATGIadlWNNQTDLSHITSNvq-qKLSKVIHKTN 345 European shrew
XP_004621848 267 KMDTVIQALSRDTLHNWGLSVMSSNLDLYIPKLSLSGINELDEILTALGLedlKANHTHPHENKSTv--qKVTKMIYKSD 344 European shrew
XP_012791221 274 DIDNVIQALSQDALQRWSESVITRPLGLYIPRLSLSGTYDLGDIMKAMDIidlKKKQTDLSSITGNak-rKLSKVLHKAK 352 European shrew
XP_004434288 252 KIDTVITALSRDTIQRWGESLTRRHLNLYIPKVSISGACDLGDILRDLGIadlHNNKADFSGITREasvsTPLKVLHQSR 331 southern white ...
B2D1U1       272 KMDTVIAALSRDTIQRWSESLTTGQVNLYVPRVVISGAYDLRAILGDMGIadlFDKEADFSGITREap-lKLSKVVHKAV 350 brown bear
P23775       250 KVDTVIAALSRDTIQRWSKSLTYRLVHLYIPKASISGAYELRGALAAMGIadlFTNQANFSSISQEgp-lKVSKVLHKAV 328 rabbit
Feature 1              ##################    #######                       
2VDX_A       319 LQLNEEGTEAAGAMFLEAIPRSKPi---ILRFNQPFIIMIFDHFTWSSLFLARVMNPV 373 human
2V95_A       317 LQLDEGNVLPNSTNGAPLHLRSEPl---DIKFNKPFILLLFDKFTWSSLMMSQVVNPA 371 Norway rat
2VDY_A       319 LQLNEEGTEAAGAMFLEAIPRSKPi---ILRFNQPFIIMIFDHFTWSSLFLARVMNPV 373 human
Q60543       350 LQLDEKDEPPVTTTEAPPQTTSEPl---TLTFNKPFIIMMFDSFTWSSLLLGKIMNPA 404 golden hamster
XP_004621842 346 LRITEKGKEAAAPPVSTSGDQGETaqltKIQFNRPFILMIFDNVSWSSLFLGKVVNPS 403 European shrew
XP_004621848 345 LQLSENGQAAPAKVSSSIEGRKTP----EIHFNHPFIIMVFDHTSWSSIFLAKVMNPL 398 European shrew
XP_012791221 353 LEISEQGLQQETPTESAGPNVANTk---SVRVDRPFLFMVLDNVSQSILFLGKVMTPF 407 European shrew
XP_004434288 332 LQLDEKGARANAPAAITAHAVSEPl---TVRFDRPFLLLVFDHFTWSSLFLIKVVNPT 386 southern white rhinoceros
B2D1U1       351 LQLDEKGLEAATCPRVMLEGASEPl---TFRFDRPFVLMIFDHFSWSSLFLGKVVNPN 405 brown bear
P23775       329 LQLDEHGGVEVAATGGPLQLVSEPl---TLNFNRPFLILIFDDFTWSSLFLGKVVIPA 383 rabbit

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