5B0P,5B0S


Conserved Protein Domain Family
GH130_Lin0857-like

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cd18612: GH130_Lin0857-like 
Click on image for an interactive view with Cn3D
Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase
This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.
Statistics
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PSSM-Id: 350124
Aligned: 48 rows
Threshold Bit Score: 352.968
Created: 6-Dec-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: active site [active site], 4 residue positions
Conserved feature residue pattern:N D Y DClick to see conserved feature residue pattern help
Evidence:
  • Comment:conservative active-site residues (invariant sites among close relatives of 4-O-beta-D-mannosyl-D-glucose phosphorylase/MGP)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #                                                                        
5B0P_A     24 FEVIGAFNGGVAEYng-eVLLLLRVAEkpvsedpeivlapvynaknkelelqsfrlddenydfedprmirskaklegfsy 102 Listeria innocua C...
PIN89433   21 WSVTGILNPAAIRMpngkIMLYVRVAEnashkhgkklvcpimvhdrgsrnikyqe--ihekditrkgvegevflkeglcr 98  Candidatus Pacearc...
OHB69768   26 FEVIGTFNPAAIEFdd-gVVLLVRVAErptetrqryvalpywdwqrggvatdwr----rndevepidprmvrikssgqir 100 Planctomycetes bac...
BAL52831   24 LRVLSAFNPGVAQVgd-eVWLLVRIAEtpreqrpgwvglpryapdkpepvidwl----pesevewidprvvrlratghtr 98  uncultured prokaryote
ODU00048   24 FEVIGTFNPGVTVHng-eVLLLVRVAErpreerpgfvplprweqgkgltidwlt-----edevtqddpravkvkatgrmr 97  Planctomycetes bac...
PIN89536   34 WEVEGALNPGAVRMpdgkIVLYIRIAEtaganhrelkmcpriiskkdftitfdk-----ikgnilekkgryilldgggci 108 Candidatus Pacearc...
PIN85707   21 LRMRGVFNPGGIRLpnkkILLFARVAEtpkhdekifiaprfsgekelkwsver------lnrkkmnihadyaftdfkiyr 94  Candidatus Diapher...
5B0S_A     24 FEVIGAFNGGVAEYng-eVLLLLRVAEkpvsedpeivlapvynaknkelelqsfrlddenydfedprmirskaklegfsy 102 Listeria innocua C...
AFH48431   23 LEVFGVFNPGAAKFnd-eIILLLRVAVkpksekgwikipiadktdsfaikilkwk---ktkslkildkdarfidindkry 98  Ignavibacterium al...
OEU63518   23 YKVVGAFNPGAITYgd-eIILLLRVAEkceskpgfvstpvykfesgrsypaimef---keddpdvqlkdtrgviykgkdy 98  Desulfobacterales ...
Feature 1                                             #                                       
5B0P_A    103 ltslsYIRIARSK-DGHHFTLDekpfl-ypfneYQTFGIEDARVTQIg--dTYHVNFSAVSe-FGVADALVTTKdfeNLE 177 Listeria innocua C...
PIN89433   99 lptisHFRRVILSkSGLKVEKIdqraaflgrknDGDFGVEDPRIVKIg--dRYYMTYVGVSmfEGISTYLAVSNdleKWE 176 Candidatus Pacearc...
OHB69768  101 ltflsWLLVAFSR-DGLTIDCFgeeaf-lpanrYEAFGVEDPRLTRId--dRFYFTYVAVSe-HGVATSLASTAdfkSFE 175 Planctomycetes bac...
BAL52831   99 ltfvsHLRLVKLDsSGKRVQAIastptmrpeteWETYGIEDPRITFLe--gRYFFTYVTVSp-HGACTALASTVdfqAIT 175 uncultured prokaryote
ODU00048   98 ltytsYLRLVRCG-DGRKVREVtnvql-wpeteLEEFGVEDPRITRIg--dRYYITYVAVSr-YGVSTALASTAdfqKFE 172 Planctomycetes bac...
PIN89536  109 lthmsHFRKVILErDGFNIDKIeqapaflgtsdDGDYGVEDPRISKIg--nTYVMTFVGVSaeEGISTYITTSKdmkTWG 186 Candidatus Pacearc...
PIN85707   95 lptisHLRKVWIDkDGFEIDKIsqspdffglkeDGDFGVEDPRIMHLkkenKYVMTYVSVSmhSGVSTSLATSKnfnTWK 174 Candidatus Diapher...
5B0S_A    103 ltslsYIRIARSK-DGHHFTLDekpfl-ypfneYQTFGIEDARVTQIg--dTYHVNFSAVSe-FGVADALVTTKdfeNLE 177 Listeria innocua C...
AFH48431   99 ltsisLIYLARIR-DGIHFDISkepal-apsneHEVFGVEDPRIIRId--eKYYITYTAVSe-NSFCTALASTEdfkKFE 173 Ignavibacterium al...
OEU63518   99 lstmsHIRLARSK-DGINFTVEdkpfi-ypvdeSEKYGCEDARVTFId--gKYYINFTVVSe-DSWSTALMVTEnfiTIE 173 Desulfobacterales ...
Feature 1                                                                                     
5B0P_A    178 YQGNIFAPENKDVLIFPEKINGKYYALHRPSLKs-IGNLDIWIASSPDLRSFGDHRHLLGIRPgeydsgRVGGGCVPIKT 256 Listeria innocua C...
PIN89433  177 RRGLIFREQNKDVALFPEIVNGEYVALNRPESTmhFTKPGIWISYSKDLVYWGKDKNLMRPREnswegeRIGGGCPPIKL 256 Candidatus Pacearc...
OHB69768  176 RHGIIFCPENKDVVLFPEKIDSQYVALHRPNRQshFGIPEIWIARSPDLYHWGSHQRLLGAEVvwa-taKIGGGTPPIRT 254 Planctomycetes bac...
BAL52831  176 RHGIIFPPENKDVLLFPERIRDEYAALHRPNPNthFHAPEMWIAYSPDLIRWGRHQPLYGGGRewe-ndRVGGSVPPMRV 254 uncultured prokaryote
ODU00048  173 RMGVIFCPENKDVVLFPEKFGDDYVALHRPVPGtpFNRPEMWIARSIDLTDWGRHRWLHGGGSdwe-tgRVGAGAPPIRV 251 Planctomycetes bac...
PIN89536  187 KRWLAFHEQNKDVVLFPEKIKGRYVALHRPEAIfsVYRPSIWISYSPDLVYWGDSKVLIRPRAntwetqRIGSGPPPLKT 266 Candidatus Pacearc...
PIN85707  175 REGIIFPQQNKDVVIFPEKINGEYVALNRPEGTmiFDKPHIWISYSKDLIYWGKHKPLIHPRStgwdtvRIGPGTIPIKT 254 Candidatus Diapher...
5B0S_A    178 YQGNIFAPENKDVLIFPEKINGKYYALHRPSLKs-IGNLDIWIASSPDLRSFGDHRHLLGIRPgeydsgRVGGGCVPIKT 256 Listeria innocua C...
AFH48431  174 KLGIIFPPENKDAVFFPERINGKYFSLHRPTVSf-IGRPSIWISESEDLIHWGKHRIFLTPNNtkwertKIGAGPQPLLT 252 Ignavibacterium al...
OEU63518  174 RKGIIFHPENKDVAIFPEKVNGKYIALHRPNNSg-FGKASVWYSESPDMLHWGNHKCIARPRDmkwesmKIGGGAPPIKT 252 Desulfobacterales ...
Feature 1                                  #                                                  
5B0P_A    257 eeGWLILYHgate-------------enrYVMGAALLDlnDPTIVLKRtk--tPILEPVADYEknGFFGDVVFACGAIQe 321 Listeria innocua C...
PIN89433  257 keGWLMIYHgvksekne----esgedeniYSAGAVLLDlkNPEKIIARspkdtPLMKPEAKLEkfGFINNVVFPTGVVPd 332 Candidatus Pacearc...
OHB69768  255 drGWLTLFHgharpda-------gggvgeYAAAALLLDsdQPERVIGFsp--qPVMVAEQEFErsGFLPDIVFPTGLVRr 325 Planctomycetes bac...
BAL52831  255 peGWLEIYHatrrlpg-------ergvgvYTAATMLLHpdEPERILKIgt--ePILVPEADFEreGFVPDVIFPTGAVVr 325 uncultured prokaryote
ODU00048  252 eeGWLEIYHgnrrsnq-------pgkvgtYSAGAMLLDadDPSKILRRtr--ePILTPTTEFEriGFVPNVVFPTGVVEq 322 Planctomycetes bac...
PIN89536  267 kkGWLLIYHgvssirknpeindsdemiskYCAGALLLDlkNPEKILARspplkPLLEPTETYEetGFMNQVVFPTGLILd 346 Candidatus Pacearc...
PIN85707  255 aeGWLEFYHgvrlknpa-----dsdsakiYSAGAILFDlkNPEKIIARtspkkPLFGSDLDSEkkGFLNQVVFPTAAIPs 329 Candidatus Diapher...
5B0S_A    257 eeGWLILYHgate-------------enrYVMGAALLDlnDPTIVLKRtk--tPILEPVADYEknGFFGDVVFACGAIQe 321 Listeria innocua C...
AFH48431  253 dkGWLIFYHscgd-------------nqtYSMNLILTEknNTQKIIGKst--kPIFTPRYKYEkvGVVPNVVFCNGWIAk 317 Ignavibacterium al...
OEU63518  253 tdGWLSIYHgkgd-------------nslYSLFCLLLDlnEPYKVVRRae--tPLLIPTEPFEieGFFGNVVFTNGMVEk 317 Desulfobacterales ...
Feature 1                  #         
5B0P_A    322 g--dTLHMYYGVADTSMAGCDMK 342 Listeria innocua Clip11262
PIN89433  333 g-rdNLLVYYGGADSYIFVRKFS 354 Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_34_76
OHB69768  326 e--dHLLVYYGAADTATGVTQYS 346 Planctomycetes bacterium RBG_13_63_9
BAL52831  326 d--dRLLIYYGAADTCTGVSELS 346 uncultured prokaryote
ODU00048  323 e--gTYLLYLGAADTCCAVVELD 343 Planctomycetes bacterium SCN 63-9
PIN89536  347 knkkDVLIYSGGADSVISVKKLS 369 Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_32_14
PIN85707  330 ldkkSLLIYSGGADSSITVRKVL 352 Candidatus Diapherotrites archaeon CG11_big_fil_rev_8_21_14_0_20_37_9
5B0S_A    322 g--dTLHMYYGVADTSMAGCDMK 342 Listeria innocua Clip11262
AFH48431  318 d-keKILIYYGAADKYVALAETE 339 Ignavibacterium album JCM 16511
OEU63518  318 d--gNIYIYYGAADESVGLAITD 338 Desulfobacterales bacterium S5133MH16

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