6WJV,2BYK,5Y27,5Y26


Conserved Protein Domain Family
HFD_POLE3_DPB4

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cd22928: HFD_POLE3_DPB4 
histone-fold domain found in DNA polymerase epsilon subunit 3 (POLE3) and similar proteins
POLE3, also called arsenic-transactivated protein (AsTP), chromatin accessibility complex 17 kDa protein (CHRAC-17), DNA polymerase II subunit 3, or DNA polymerase epsilon subunit p17, may participate in DNA repair and in chromosomal DNA replication. It is an accessory component of the DNA polymerase epsilon complex, which consists of four subunits: the catalytic subunit POLE and the accessory subunits POLE2, POLE3 and POLE4. It forms a complex with CHRAC1 and binds naked DNA, which is then incorporated into chromatin, aided by the nucleosome-remodeling activity of ISWI/SNF2H and ACF1. In fungi, POLE3 has been named as DNA polymerase epsilon subunit D (DPB4, also known as DNA polymerase II subunit D). DPB4 acts as an accessory component of the DNA polymerase epsilon (DNA polymerase II) that consists of POL2, DPB2, DPB3 and DPB4, and participates in chromosomal DNA replication. It also functions as a component of the ISW2 complex, which acts in remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA.
Statistics
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PSSM-Id: 467053
Aligned: 111 rows
Threshold Bit Score: 64.8418
Created: 31-Aug-2020
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimercatalytic
Conserved site includes 36 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:5Y26; Schizosaccharomyces pombe Dpb4 forms a heterodimer with Dpb3, contacts at 4A
  • Structure:6WJV: Saccharomyces cerevisiae DPB4 forms a heterodimer with DPB3; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #   ## #                                ## ##  ## ### #######           
6WJV_4        29 QDLLFPKSTIVNLAREVpqqsg----------------------kkllINKDASLALQRGATVFVNHLLLFAREIAKsq- 85  Saccharomyces c...
5Y26_A        14 DDLALPRSIIMRLVKGVlpe-------------------------kslVQKEALKAMINSATLFVSFLTSASGEIATnn- 67  Schizosaccharom...
CCW62838      82 NANGLAIGQVMRAVTSAlpe-------------------------gmhLSREARVAFQKVATTALLYIACLADDARSsrt 136 Phytomonas sp. ...
XP_030552259   6 SDFKMPEKVVTKLLKDAlpd-------------------------nvvVSRDAKNAACRSASIFILQLSIAAAEKAQds- 59  Rhodamnia argentea
CUI14141      39 GPFPLAPSQVDQVVKRAtpq-------------------------gyqVSKDAKAAINKSANVFLLFMEALISSEKVsal 93  Bodo saltans
BAN65282      10 ELEILPVKFVQAALHKGmlqdvtlhnvdevtstrtgksianyalknrkFSRDAVNMLNRAASLFVLYITTLAQDIAKnk- 88  Babesia bovis
OTF77936       5 SDFTIPLNVVTKIIAESlpde-----------------------stvtVEQDFIKALARAAHLFILYTTTRANEVAEen- 60  Euroglyphus maynei
RWS07940       6 EDFNLPHSVIAKLIKDAlpe-------------------------nvvVSKDARTALSKATSFFILYLTSFAKNDSEhn- 59  Dinothrombium t...
SCM24432      16 TMFDLPNSVILKIINNSidlk------------------------nykIKKEALNTLSKCLSLFILYITDGALEHCEse- 70  Plasmodium chab...
OII77194      10 AKFLYPNSTISRIVKLSvgs-------------------------ncrISRNALDMINRCSILFSIYIASMAVSESRdn- 63  Cryptosporidium...
Feature 1                   #####  #      ###  #  ##  ## ##
6WJV_4        86 ---------dKKSCSVDDVLSALDHIGHsALKGPVRDKLDEY 118 Saccharomyces cerevisiae S288C
5Y26_A        68 ---------nRKILMPQDVLNALDEIEYpEFSKTLKKHLEAY 100 Schizosaccharomyces pombe 972h-
CCW62838     137 k------gkkRKTLTVQDVRDALEAAGLaHLIPLMHTTVKRN 172 Phytomonas sp. isolate EM1
XP_030552259  60 ---------kRRTLDNQDIIKAVTDLGLgEYAPQLVRFGAQR 92  Rhodamnia argentea
CUI14141      94 htgkrqqppkRVTISAADVKNALQDAGMaHLLPLMSANKRSR 135 Bodo saltans
BAN65282      89 ---------kRTTIYEADILEALNTALFwEIEREMSEDMNEV 121 Babesia bovis
OTF77936      61 ---------nRRTVHSQDVLSAISFYGFdHLIPKLIDCHRNY 93  Euroglyphus maynei
RWS07940      60 ---------eRLSLTADDLFNAFNQLGFvEFLPHLQQCYDEH 92  Dinothrombium tinctorium
SCM24432      71 ---------kRFTIFVRDILNSLNDSLFlDIYDQLKTHVAIQ 103 Plasmodium chabaudi adami
OII77194      64 ---------kRAIVNYIFVNKVLETSGF-HLRDILTPQSFLY 95  Cryptosporidium andersoni

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