2VMK


Conserved Protein Domain Family
CafA

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COG1530: CafA 
Ribonuclease G or E [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 441139
Aligned: 108 rows
Threshold Bit Score: 565.544
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2VMK_A         2 KRMLINATQQEeLRVALVDGQRLYDLDIESPGH-----------EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPL 70 
AJP49249       3 EQFLINFTPEE-TRVASLQQGVVQELHIERNNS-----------CGVVGNIYLGYVVRVLPGMQSAFIDIGLERSAFLHA 70 
NP_274790     28 ETILVNITPAE-TRVAVLEENNICELHIERNSE-----------HSLVGNIYLGVVRRVLPGMQSAFIDIGLERAAFLHI 95 
WP_011002125   3 EDILVNITPQE-TRVAIVQQAAVQELHIERTLT-----------RGLVGNIYLGKVVRVLPGMQSAFIDIGLERAAFLHV 70 
WP_011279786   3 EELLINISPME-SRVAVLDNGILGEIYIERHHK-----------LGLVGNIYLGTVVRVLPGMQAAFVDIGQSRTAFLHV 70 
WP_011312949   3 EEILVNVTPQE-TRVAVLHLGAVQELHIERAKC-----------RGLVSNIYMGRVVRVLPGMQSAFIDIGLERAAFLHV 70 
WP_011482904   3 QDILINWSPQE-TRVAVVELGAVQELQVERTLE-----------RGLVGNVYLGKVARVLPGMQSAFIDIGLDRAAFLHV 70 
WP_012030829  16 IEILVNHTPYE-TRVALLEDGLLHDVLIERERR-----------RGIVGNIYKGKVQRVLPGMEAAFIDIGLERAGFLHM 83 
WP_011902454   3 EEILINITPQE-TRVALIQQGAVQELQIERTRQ-----------RGIVGNIYLAKVVRVLPGMQSAFIEVGLERTAFMHV 70 
WP_011995442   3 EEVLINVGPGE-TRVAIVEDGRPVELFLERTMEddlkaktgragHSLIGNIFLGRVQRVLPGMQAAFVEVGLERAGFLGA 81 
2VMK_A        71 KEIAREYFPANY----------------------------------SAHG-R----PNIKDVLREGQEVIVQIDKEERGN 111
AJP49249      71 ADIWEERAAN--------------------------------------GTeQ----RSIEKILTAGQSLRVQVQKDPIGT 108
NP_274790     96 VDVLEQRRN---------------------------------------PEeT----QRIEHMLFEGQSVLVQVIKDPINT 132
WP_011002125  71 ADIWHPREAKD-----------------------------------APAApH----VAIEKTLFEGQALTVQVIKDPIGT 111
WP_011279786  71 NDMQREPRPVAKsskiektddertiieataddlavtppvvstqsteAVLIsK----TLIQHRLHESQRILVQVTKDQLGS 146
WP_011312949  71 ADIWEERHN---------------------------------------GEtE----RPIEQILHEGQNLMVQVIKDPIGT 107
WP_011482904  71 ADLMSSINSRHAetelq------------------------aagtsTSASpAtvalQPIEKQLFEGQAVMVQVLKDPIGT 126
WP_012030829  84 KNISLPTEM---------------------------------------VGkE----QKISEILHEGESILVQVLKDPIGT 120
WP_011902454  71 ADITQ-------------------------------------------SNpQ----PQIEKLLFEGQSLLVQVLKDPLGT 103
WP_011995442  82 REARCLCELTGL-----------------------------------DEGtL----PPISACVQEGQTILVQAVKDPISD 122
2VMK_A       112 KGAALTTFISLAGSYLVLMP-------NNpRAGGISRRIEG-DDRTELKEALASLEl---PEG-----MGLIVRTAGVGK 175
AJP49249     109 KGARLTTQISIAGRLLVYLP-------QD-DHVGISQRIVDeEAREKLRGRIQALL----SPEd---rGGFILRTVGLEA 173
NP_274790    133 KGARLSTQISLAGRFLVHLP-------QE-DHIGVSQRIEDdAERSSLRERLDKLL----PENa---cRGYIIRTNAENA 197
WP_011002125 112 KGARLSTQISIAGRTLVYLP-------QD-PHIGISQKIGNeTDREALRQRVTRMV----PADe---rGGFIVRTIAEEA 176
WP_011279786 147 KGARLTTNISLPSRYLVYLP-------SS-DHIGISQRIDGeDERTRLKTELNSLMq---TVNl---kGGLIARTAAERV 212
WP_011312949 108 KGARLSTQISFAGRYLVYLP-------QE-THIGISQKIEGeEEREQLRQKLHQLI----PQDa---tGGFIVRTMAETA 172
WP_011482904 127 KGARLTAQISIAGRLLVFLP-------QD-NHIGVSQKIPP-RQREDLRQRVQAL-----TEDm---gGGFILRTNGEDA 189
WP_012030829 121 KGARLTTEISISSRFLVFLP-------KS-HDIGVSIKIVSeTQRQNLREMMHEFHr---GQE-----GGFIVRTAIETA 184
WP_011902454 104 KGARLTTQLSIAGRNLVYLPpagtdvaTE-KYIGVSQRIDKpEEREAIKARLASLM----AEDe---kGGIIVRTSAQDA 175
WP_011995442 123 KGARLSANVTIPGRLLVLVP-------NQ-SGVALSRRIEDePERERLAALVEEMVerfnPMGvtgepAGFIVRTAAIGA 194
2VMK_A       176 SAEALQWDLSFRLKHWEAIK---KAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALgRPDf 252
AJP49249     174 SDEELAADIVYLRRIWQEIK---QRSVGMFPPVLLHHDLTLAQRVLRDLVTQETTAVLIDSRENFQKLKVFAQEY-VPQv 249
NP_274790    198 TDEQLQSDIDYLTKVWEHIQ---EQAKIRPPETLLYQDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQY-VHGa 273
WP_011002125 177 TDEELANDVAYLRKIWATIR---HNATTLPAPSILYQDLNLAQRVLRDFVTDDTRSIQIDSRENYQKLIEFAQEY-TPAv 252
WP_011279786 213 PVDKLEEDIYYLLQLWRTICarhQEMKQHQSSELIYQELSLPLRSIRDLVHADTEKVIIDNAQIYEQVRYFAKEF-VPFv 291
WP_011312949 173 EDAEMLADIDYLRRLWSSIQ---SRGN-CVVPCLLYQDLDLSLRVLRDFVNRDTTRILIDSRETYQRMAEFAQNY-THAv 247
WP_011482904 190 TDAELGEDIAYLRKTWSRIK---EASLRLPPASVLHQDLNLLQRVLRDVVVEGTQTIRIDSREQFDNLKAFAVEF-MPAt 265
WP_012030829 185 DFWAMRADMQYLHRVWDSIL---TTYRESYASTLIYGDLPLYQRVLRDYISPQVKQVIVDDPEAYRAMAQFAGNF-LIEm 260
WP_011902454 176 SDTELQHDMHYLRTTWENIR---DAMKSKAAPSLLYQDLSLAERVLRDVAGEDTSQIRVDSAENFEKLKGFANLY-MPNl 251
WP_011995442 195 TAEDIAADARQLAEEWRKVR---ETEKRSTAPCVVFHDLDPVSKTLRDCVSADTSRVLIDCADAFGEAQRYCRRA-MPEm 270
2VMK_A       253 SSKIKLYtGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIAR 332
AJP49249     250 SDRLVHYtGDRPLFELHGIEDEIQKALARRVDLKSGGYLIFDQTEAMTTIDVNTGGFVGARNFNDTIFKTNLEAALTVAH 329
NP_274790    274 LGRIELFkGERPLFETHNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETIFRTNLEACHTIAR 353
WP_011002125 253 VERLTHYtGERPIFDLYNIEAEVERALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFKTNLEAAHTIAR 332
WP_011279786 292 YDRIVHYtAEQSLFDVHRVEDDLRDALKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATHAIAR 371
WP_011312949 248 LDKLQHYgADRPLFDLHAIEDEIAKALGRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGARNFDDTIFKTNLEAAQAIAR 327
WP_011482904 266 VQKLQLYsGERPIFDLYNIDEDIARALGRRVDLKSGGYLIIDQTEALTTIDVNTGGFVGARNFDDTIFKTNLEASQAIAR 345
WP_012030829 261 ADRITLYdGDRTLFDRYGVEEEIERALKRRVDLKSGGYLMIDQTEAMTTIDVNTGGFVGKSSQEDTIFKTNLEAAKAIAR 340
WP_011902454 252 LSKLTLHrGERALFDLFDVDAEINKALGRRVDLKSGGYLMIDQTESMTTIDVNTGSYVGARNLDDTVFKTNLEAAQAIAR 331
WP_011995442 271 LDRIQLFnGPGQLFSLYDVDGEIEAALEPRAELPSGGWITVETTEALTAIDVNSGRYTAATGLEETSVKINLEAVHEIVY 350
2VMK_A       333 QLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGT 412
AJP49249     330 QLRLRNLGGIIIVDFIDMEDEQHQAAVLAEFKKALASDRTRVTLSEFTQLGLIEMTRKRTRESLAQILCEPCPVCGGRGE 409
NP_274790    354 ELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGFTSLGLVELTRKRSRENLNQVLCEPCPSCQGRGR 433
WP_011002125 333 QLRLRNLGGIIIIDFIDMESGEHRDAVLAELRRALARDRTRITVNSFSQLGLVEMTRKRTRESLAHVLCEQCPVCQGKGQ 412
WP_011279786 372 QLRLRNLGGIIILDFIDMLEQQHKDDILESLQSQLVQDYAKTKITQVSELGLVEMTRKRTRESLGQQLCEPCSTCQGRGF 451
WP_011312949 328 QLRLRNLGGIIIIDFIDMDNVEHQDAVLTELKKALTRDPTRTTVSGFSTLGLVEMTRKRTRESLAHVLCEPCPTCAGRGE 407
WP_011482904 346 QLRLRNLGGIVIVDFIDMIKENHRDAVLAEFQKQLARDRIKTAVNGFSALGLLEMTRKRTRESLAHQLCEPCSACMGKGV 425
WP_012030829 341 QLRIRNLGGIIMLDFIDMTSTEHQQSVVDALLNALAGDKSKYTISPISPLGIIEMTRKRTRESLKQVMCETCPRCSGRGY 420
WP_011902454 332 QLRLRNLGGIIIIDFIDMIGRDHQESVLYELKRNLERDHARTSVSEFSALGLVEMTRKRTRESLAHITCEPCATCQGKGE 411
WP_011995442 351 QLRLRGTGGLIVIDFIHLNDPANIQKVIDALNEGFAKDRVPTQISGMSEFGLVEMTRKRVREPLDKLLTEP-AYPHGRPR 429
2VMK_A       413 VRDNESLSLSILRLIEEEALKENT-QEVHAIVPVPIASYLLNEKRSAVNAIETRQdGVRCVIVPND-QMETPHYHVLRVR 490
AJP49249     410 IKSAQTVCYEILRELLREARQFAT-RELRVIAAPVVIEKFLEEEAQALTMLSDFI-GRSVSLHAES-GYTQEQFDIVLM- 485
NP_274790    434 LKTPQTVCYEIQREIVREARRYDA-ESFRILAAPNVIDLFLDEESQSLAMLIDFI-GKPISLAVET-AYTQEQYDIVLM- 509
WP_011002125 413 VKTPRTVCYDILREIMRESRQFNP-REFRILASQSVIDLFLEEESQHLAMLGDFI-GKPISLQVESaAASQEQYDIILM- 489
WP_011279786 452 VKTAETVCFEIFREIMRCARTYNSpKKFTVVAHAAVIDLLLTSESDTVADLEYLL-GRVITFDVEN-LYTQEQYDIVLD- 528
WP_011312949 408 IKTAQTVCYDVLREILREARQFDA-REYRILAAQSVIDLFLDEESGSLAQLIDFI-GKPVSLQVET-TYPQEQYDIILL- 483
WP_011482904 426 VKTARSVGYDILREILREARQFNP-REFRVVASPKVIELFLDEESQHLAGLSDFI-GKPISLQAEA-AMAQEQYDIVLL- 501
WP_012030829 421 VKTTETIVYELFRDLMREAREYAP-KGMTVIGNPDFIEFIREEESMAFSDLQILL-KMPIRLQSDG-AYSQDKYDIVMM- 496
WP_011902454 412 IKTAQTICYEILREIVREHRQFNP-REFRIVAAPDVIDLFLEEENQFLAQLGDFI-GKPITLQAEG-SFRQEQYDIVLS- 487
WP_011995442 430 RKTCATMANDLLRRIAREAQATPG-RPLVARASVEVVDWLERGNPYLVERLRRKV-PADISLIGEP-AFPRERIDVGIVQ 506
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