Conserved Protein Domain Family
ClC_sycA_like

?
cd03682: ClC_sycA_like 
ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Statistics
?
PSSM-Id: 239654
Aligned: 21 rows
Threshold Bit Score: 446.64
Created: 1-Jun-2006
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative Cl-putative pore
Feature 1:putative Cl- selectivity filter
Evidence:
  • Comment:Based on sequence similarity to other members of the family

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                        #####          
AAY28726     23 LVVPMAVVVGSLCALFLWSLDKATAARfdh-pwLIFLMPVAGFLMVLVYQHFGrg----seGGNNLIVDQIHEPGGgvPL 97  Rhizobium tropici
AAK33674     22 LALPIGGAVGVVDVIFGKGLLFLSEYRdhhlflLLPFLALAGLVIVFLYDKLGke----vrQGMGLVFQVGHGQKNqiPP 97  Streptococcus py...
ABA45468     17 FSLLIGGVVGAITAVFGRVLLFLTAFRsdyiayLLPFLSIVGLFIVFVYQKFGgk----svKGMGLVFEVGHGNEEtiPK 92  Streptococcus ag...
AAV62725     23 YAILLGVLVGLIDAVFGRVLIGLSEFRdhhlfyLVPALPLAGLLIVYLYQKFAgk----aaQGMGLIFKVGHNEEDqvPL 98  Streptococcus th...
NP_519924    11 LASLTGVLAGLGSAALLLALDWATLTRtah-pwLLWLLPLAGLAVGLLYHYTGra----veGGNNLLIDEIHDPKRvvPK 85  Ralstonia solana...
NP_561506    30 IGSLIGIFIGGVIAIFLKSLEWATDYRvnh-gfVLFLLPIGGALVSFLYYKFGrn----svKGNNLIIENINNYCGdvPL 104 Clostridium perf...
BAA75315     15 FGIMIGAIVGSATALLLTVNDHLGETRenr-pwFVLFLPLAGLALGYLYMKAGtsagnelyKGNNLVIESVQGKGKm-LL 92  Bacillus halodurans
ZP_00801696  30 WGSIIGILVGTTSALLINLNDFLTDVRean-hfSLFFLPLGGIVIGYIYMYYGkg----srKGNDLIIEHVHHGQGkiPL 104 Alkaliphilus met...
NP_816111    21 ITAIIGLFMGALSAFFLKSLTYVTDVRlan-pwLLFILPISGVVFTYFYTRFGkn----asRGNNLVIEQGNGGEEdiPL 95  Enterococcus fae...
NP_721660    23 MGLLIGALVGLVDTIFGRVLIYLSAVRdanpwyWLPFLGIAGLIIVYLYQKWGak----ssKGMGLIFQVGFEEEDhiPK 98  Streptococcus mu...
Feature 1                           #####                                                       
AAY28726     98 RMAPFILVSTVLTHLVGGSAGREGTAVQLGGSVASAFARVSRLghgeIRILLMAGIAAGFGAVFGTPIAGAVFALEVLTI 177 Rhizobium tropici
AAK33674     98 MLIPLILFSTWVTHLFGASAGREGVAVQIGATISHYCRRFVTSqe-aARHLLIMGMAAGFAGLFQTPIAAVVFALEVLLV 176 Streptococcus py...
ABA45468     93 RLVPLVILTTWLTHLFGGSAGREGVAVQIGATVSHYFQKYCRLqn-aSQLFLVMGMAAGFAGLFQTPLAATFFAIEVLVV 171 Streptococcus ag...
AAV62725     99 RLIPLVTVTTWLTHLFGGSAGREGVAVQLGATVSHAFSRYFKLpn-aSCIFLTMGMAAGFGGLFQTPIAATFFALEVLTL 177 Streptococcus th...
NP_519924    86 RMAPLILLGTVVTHLFGGSAGREGTAVQMGGSFADGLTRLFRLdneaRRILLMSGISAGFASVFGTPLAGAVFGLEVLAI 165 Ralstonia solana...
NP_561506   105 RMVPLVFFGTVVTHFFGGSAGREGTGVQIGASIAETIGKLLKLnkedSKIMLMAGVSGGFSAIFGTPLAGTIFGLEVSVL 184 Clostridium perf...
BAA75315     93 RLGPLVYLGTFMTILFGGSTGREGAAIQMGGSVAEAVNKLFKVklidTRILLMGGISAGFGAAFGTPITAAIFGMEMASL 172 Bacillus halodurans
ZP_00801696 105 RMGPIVFVCTFITHLLGGSTGREGAAIQMGASISEGVNRFFNVaeidRRILIISGISGGFGSAFGAPLAGTIFGMEAIVI 184 Alkaliphilus met...
NP_816111    96 RLIPLTLFGTITTHLFGGSVGREGTAVQMGGAIANAVGKVFKLsaleRQVIIISGISAGFSSVFGTPLAGTVFGLEVLAV 175 Enterococcus fae...
NP_721660    99 RLIPMVIVTTWLTHLCGGSAGREGVAVQLGATVSHWFSRLFHFpn-kSRIFLLSGMAAGFAGLYQTPMAAILFALEVLVL 177 Streptococcus mu...
Feature 1                                                                                       
AAY28726    178 GrmqyealiPSLAAAIAADWTCHAWGIEHihyhigyltgipastfhldallLAKVGLAGVIFGLAARCFSELSHAASAAF 257 Rhizobium tropici
AAK33674    177 GtlrysallPSLVAAYVASWTSHALGLEKftivleet-------ltitpltLVKLIGLGLIFGLVGNSFAYLLGWFKPYL 249 Streptococcus py...
ABA45468    172 GrlmvsyvlPSLIAALTANFVSHSLGLEKfshsiats-------maltpdiILKLLVLGLCFGLCGNLFAYLLAKAKLIA 244 Streptococcus ag...
AAV62725    178 GqlslpilvPTLIASFMASTTSHLLGLEKfshfvsks-------ltidletFMKLALLGLAFGLAGNLFAYLLSLAKKKV 250 Streptococcus th...
NP_519924   166 GrlrydailPCFVAAIVGDLVPPLLGVHHtpyaipfv-------phltplaIGAVVVAGIVFGLAGMTFAELTHRLGRWL 238 Ralstonia solana...
NP_561506   185 GkmsyealiPSFFASIVGNEVVKILGVHHshykvlgv-------adisvliILKVIISAICFGLASRLFSELTHKLKGLF 257 Clostridium perf...
BAA75315    173 GrlkfealvPCLVASFVGHYTTEKFWHVEhekfiiat------vpevsaltFSKVILLAIVFSLVSVLYCQLRHGIHKLS 246 Bacillus halodurans
ZP_00801696 185 GktkyeafiPCFVASFIGHFVATAWGIHHdefiiqni-------pdintvnLMKVIILSIIFGFTSVLYSQLRHEIKRLS 257 Alkaliphilus met...
NP_816111   176 GkvraealfPSFFAGLFANFVTESFGVTHthypmgki-------ptwsvelFVKLFLASICFGLAGWVFSRSIVFLKKTY 248 Enterococcus fae...
NP_721660   178 GnlglsalvPMTIASFTASLTSHSLGLEKfahtlsrt-------isltptvFIQLLILGLIFGLAGNLFAFLLAWCKQVQ 250 Streptococcus mu...
Feature 1                                                                                    ###
AAY28726    258 Krfc-ayaPLRPVIASAVLIGLVyllGTRQYLGLGvwspnpddatilgffdparVDYWSWLWKAVFTIVTLSaGFKGGEV 336 Rhizobium tropici
AAK33674    250 Sqkl-pnpYFRIAFIGALLSICLmigHVGRYSGLGtnliaa-------afsgqtILTYDWLLKMIVTVISLSaGFQGGEV 321 Streptococcus py...
ABA45468    245 Ssrl-lnpYKRIFTLGLLATFLLfifHFGRYSGLGtnliea-------sftnknLYDYDWLLKLCLTVITLAaGYQGGEV 316 Streptococcus ag...
AAV62725    251 Asll-pnpYYRVLLGGVVLTCLLlilCKGRYTGLGtnlial-------svdggtIYPLDWLFKLLLTVFTLSlGFQGGEV 322 Streptococcus th...
NP_519924   239 Kkri-pfgPLRPVLGGCVVAAAAtalGTDKYLGLGipvivd--------afhqpLPAYDFAGKAAFTIVTLAsGFKGGEV 309 Ralstonia solana...
NP_561506   258 Snkf-kntSLKSFVGGCIVILLVylvGSRKYLGLSlpllse--------afnghVSPFDFLGKLIFTSITLGaGYQGGEV 328 Clostridium perf...
BAA75315    247 EkytmknhTVRAFVGGLIIVALTyiiGSYDYNGRGldmled--------sftqdVPPYAFLAKLVFTAVTMGmGFVGGEA 318 Bacillus halodurans
ZP_00801696 258 Dkyl-knlMLRAFVGGIIIITLTyliGSRDYLGRGlpmver--------aftgdVPPFAFLAKIIFTAITMGtGFRGGEV 328 Alkaliphilus met...
NP_816111   249 Anwf-anvYLRAFLGAAIVVLFVlvlNNQRYLGLSlplled--------afagnAQPFDFVGKLFFTVLSLGaGFQGGEV 319 Enterococcus fae...
NP_721660   251 Arll-pnlYRRIFIVGLLLSLLFlvlYQGRYSGLGtnlisa-------sfsdgkIYVYDWLLKLFLTVITLAaGFQGGEV 322 Streptococcus mu...
Feature 1       ##                                                                         #  
AAY28726    337 TPLFFIGAALGNALAAIfgapaDLFAALGFVAVFAGAtNTPLACMIMGIELFGATHTVYLAVACFLAYICSGHTSIYL 414 Rhizobium tropici
AAK33674    322 TPLFAIGASLGIVLAPYlglpvLLVAALGYTTVFGSAtNTFWAPIFIGIEVFGPENALAYFVTSAAAYMVSHRHSIYS 399 Streptococcus pyog...
ABA45468    317 TPLFAIGASLGVIIAPIlglpvILVAALGYTSVFGSAtNTLLGPILIGGEVFGFANTPYFVIVCLVAYSISHAHTIYG 394 Streptococcus agal...
AAV62725    323 TPLFAIGASLGAVLAPIlglpiSLVAGLGYLSVFGSStNTLLAPIFIGIEIFGPVNAIPYAIVMAFAYLINHKTSIYG 400 Streptococcus ther...
NP_519924   310 TPLFYIGATLGNALGYVlplpfALLAGLGFVAVFAGAaNTPIASTIMAIELFGPEVGTFAGIACVVSYLFSGHTGIYP 387 Ralstonia solanace...
NP_561506   329 TPLFVIGSTLGNTLSGIlnlspSFLASLGLVGVFAGAtNTPIASFVLGIEMFGVGGAPYLFMACAISYIFSGHTGIYT 406 Clostridium perfri...
BAA75315    319 IPLFFVGATLGNTLHAFidlplSFLAALGMIVTFGGGaNTPIAAFLLGVEMFNGKGIEFFFVACLTSYLFSGHHGLWP 396 Bacillus halodurans
ZP_00801696 329 IPLFFIGSTLGNTLSPImalpaSFLAALGMIAILSGAaNTPISAFIFSVEMFKGEGITFFFMACLISFIFSGHHGIYG 406 Alkaliphilus metal...
NP_816111   320 TPLFEIGATLGSSLAPLlhlsiPFLAGLGFIGVFSGAtNTPIACFIMGIELFGSEAAVYFFMVCLISFMCSGNSGIYA 397 Enterococcus faeca...
NP_721660   323 TPLFAIGSSLGVVLAGIfhlplEFVAALGYISVFGSAtNTFLAPILIGGEVFGYQNLPAYFIAVTFAYVVNRKQSIYS 400 Streptococcus muta...

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap