Conserved Protein Domain Family
COG4941

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COG4941: COG4941 
Predicted RNA polymerase sigma factor, contains C-terminal TPR domain [Transcription]
Statistics
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PSSM-Id: 443968
Aligned: 460 rows
Threshold Bit Score: 243.08
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015796784   1 Maqttktv-----------------ataktaETLETVEAVWRMEAARVVATLARYTG--DLGLAEELAQDALVAALEQWP 61 
AKV03963       1 Msd---------------------------aSAAALVEDLFRRESGHLVAALARLLGpsNLALAEDVVHDALVTAMHAWR 53 
AKV04488       1 M---------------------------------DLDEHLFRHEAGRLVAALTRIFGvhNLALAEDVVQDAFCRALEVWK 47 
WP_012376153   1 Mattdvptqpat---------datppppvaaGPAELVEHFFRHETGRLHGTLIRLLGvqNLSLAEDLAQEAMLRALRTWS 71 
WP_009512456   1 MppsdaeqdaaagvppvehdietgapapapaAPGQLVEHFFRHEAGRLHGALIRRFGveNIALAEDVAQEALLRALRAWS 80 
WP_104022192   1 ----------------------------------MLDEHLFRHESGRMIAALTRVFGvhNLALAEDVVQDAFCRALEVWK 46 
WP_025227635   1 ----------------------mehpagplePGEDPIDHLFRRESGRMIATVARLLGlqNLALAEDVVQDAFCRAVEVWK 58 
WP_083457196  85 Lv------------------------------SVELEAHLFRRESARLVAALTRIFGvhNLALAEDVAQDAFCRALEVWR 134
WP_099093323   1 -----------------------------------MVEHFFRHEKGRLHGALVRLLGvhHLSLAEDLAQEAMLRALRTWS 45 
WP_096054757   1 Mdttastpm---------------gdpaatqRASQLVEHFFRHETGRLHGALTRLLGthNLSLVEDVAQEAMMKAFRAWS 65 
WP_015796784  62 AEGVPARPGAWLTAVGKRRAVDHFRRAETLRRKVGELGRELEAggapaeTdpa--ldaVDEALsDTAVDDDLLRLVFTAC 139
AKV03963      54 F-GAPENPKAWILQVARNRAIDILRRERRRERLMLEA----ECega-laGa------vDLALS-PEADAENQLAMMFAIC 120
AKV04488      48 VCGVPDNPSAWLMTTAKNRALDIVRKERTARTFAPEMGRWLESewt-laPa------iDEAFS-PSIVRDEQLRMMFSCC 119
WP_012376153  72 MGGVPPNPSAWITRVAINLARDALRHQRMSTGKESAIVTYLDQtrp-gsA--------APADP-DQEIRDDALRLMFVCC 141
WP_009512456  81 MGGVPPNPSAWITRVAMNLARDALRHRQMSAAKEPALVTHFDQlha-apPspa---aaLAGEA-GYEIRDDALRLMFVCC 155
WP_104022192  47 ARGVPENPAAWLMATARHRALDVLRRERTARAAAPELSRRADEaws----------gvDEAFE-PHAIRDEQLRMMFSCC 115
WP_025227635  59 YRGMPPNPEAWLMATAKNRALDVLRRERTARKFAPELA----Sews-laQt------vEESFT-PHAIKDDQLRMMFSCC 126
WP_083457196 135 TRGVPENPSAWLTATAKHRALDVMRRERTARTFAPELARFLDDkha-laPl------vDDAFA-ARTIRDEQLRMMFSCC 206
WP_099093323  46 MGGVPANPSAWITQVAMNLARDALRHRKMATGKEAAIITHHEQtta-tpA--------VAWEA-AHGIRDDALRLMFVCA 115
WP_096054757  66 FGGPPANPSAWITQVAMNLARDALRHRKMSFSKEGNIITHFEQtva-aaGaggagdatADVDA-DFRIRDDSLRMLFVCS 143
WP_015796784 140 HPVLSAEARVALTLRVLGGLTTAEIARAFLVPEATAAQRIVRAKRALADAGVPFEVADGPERRRRLASVLEVVYLIFNEG 219
AKV03963     121 DDALSSETHVTLILRLLCGLSSTEIARAFLVDVQTIDRRLHRGRARLQELGHLQDPRAVDDVRARQPSVEQALYLLFNEG 200
AKV04488     120 HPSLAEEAQVVLVLNVLCGFGANEIASALLSGRAAIEKRISRGKKTLAGARTLFDLTD-AQFELRLSVVQRALYVLFSEG 198
WP_012376153 142 HPSIAADAQVVLALKVLCGFSTGEIAQAFLTSEAAIEKQLTRTKQRIADARIPFELPAGTDLAPRLDGVLSALYLLFNEG 221
WP_009512456 156 HPSIAPDAQVVLALKVLCGFSTAEIAQAFFASEAAIEKQLGRTKQRIREAGIGFEIPEGEDLAPRLDGVLGALYLLFNEG 235
WP_104022192 116 HPRLSQDAQVALVLNVLCGFGAAEIASAFLVGRAAMEKRLARGKNALAAQRRLFDLAN-ADFAPRLDAVRRALYLLFNEG 194
WP_025227635 127 DPRLKEEAQLALVLHLLCGFGIDEIAAAFLVSHHAMEKRVIRAKKSLAELGLIFDLAD-AEFSARLSTVYRALYLLFNEG 205
WP_083457196 207 HARLPEEARIALILNLLCGFGASEIASALLTGHAAIEKRIARGKKVLASARSLFDLDD-AELEARLPTVQRALYVLFNEG 285
WP_099093323 116 HPAIAPDAQVILALKILCGFSTGEIARAFLATEAAIEKQLTRTKQRIAEAGIGFELPEGADLAPRLDGVLAAIYQLFNEG 195
WP_096054757 144 HPSIAADAQVVLALKVLGGFSTSEIARAFFSSEAAIEKQLTRTKQRIAEAKLAFDLPEGAELAERLEGVLATLYLIFNEG 223
WP_015796784 220 YSATAGDDWLRADLCEEALRLGRVLTALM-PAESEVHALLALMEIQDSRRHARTGPDGEPVLLLDQDRAKWDRSQIERGL 298
AKV03963     201 YHGSDADNPLHPAMCADALRLSELLLGASaVEPSTVHALAALFCFNAARLTARLCEDAVIVPLAEQDRSLWDASLFGRGL 280
AKV04488     199 YHGASAESAVRIELCEEAIRLTTLLREHApAATPTTNALAALMFLHAARLPARVDSAGDISAFVEQDRTRWDRRLVEEGL 278
WP_012376153 222 YKASAGERLLREELCAEAIRLGTLVVEHPvLATPRAQALLALMLLTAARLPGRLDQNGELLRLDDQDRTKWNQRMIEQGL 301
WP_009512456 236 HKASSGERLLREDLCQEAVRLTSLLVAHPaGRTPRSHALLALMLLTAARFPSRLDEHGTLLRLDDQDRSRWNQPLIERGL 315
WP_104022192 195 YHGA-GERAVRADLCGEALRLTTLLLEHAsAATPTTHALAALMCLHAARLPARTDAAGDLDASAIRDRAAWDARLVAEGL 273
WP_025227635 206 YHGASSVSVVRAELCQEALRLTYLLMENPlGAAPATFALGALMCFHGARLRTRIGPCGELAPLVEQDRTQWDSSLIEQGK 285
WP_083457196 286 YHGA-SETPVRVELCAEAIRLAALLAEHPrTAKPATFALGALMCLHAARLPARVDETGVPIALADQDRARWDARLVAEGL 364
WP_099093323 196 YKASSGDRLLREELCQEAVRLGLQLVAHPaGRAPRCHALLALMLLTIARFPSRLDEQGAVLRLDAQDRSKWNQALIARGL 275
WP_096054757 224 YKASAGEKLLREELCREAIRLTLLLVEHPaGKSAQSHALLAFMLLTAARFPARVDEQGDLLRLDDQDRTKWDFSLIERGL 303
WP_015796784 299 AALVRADQafaaeleaaaaaaaaatqssdTPQPGTYHLQAALAACHARARTaDDTDWRLIADLYDRLVRQTRSPVVELNR 378
AKV03963     281 QHLAASAT---------------------GDRLTRWHLEAGIAFEHTSAPSvAETNWARIVEYYDALAALSPGPIVALNR 339
AKV04488     279 VLLEQSAS---------------------GTELSRYHVEAAIAATHASAHTlEATDWRAIVSLYDRLMLIAPSPVVALNR 337
WP_012376153 302 VMLGAAAR---------------------GEELSEYHLEAGIAACHCAATDyASTDWPRILRHYDELQRIKPSPIVDLNR 360
WP_009512456 316 IHLAEAAQ---------------------GNELGEYHLQAGIAAIHCTAADhASTDWARILSHYDELYRIKPSPVVALNR 374
WP_104022192 274 AHLDRAAA---------------------GTEVSAYHVEAAIAAAHASAPDaASTDWATIVALYDRLMVIAPSPVVALNR 332
WP_025227635 286 RLLANSAS---------------------GYVLTEYHLEAMIASLHMEARSvEETNWRAIVELYDVLVEMRPSPVVALNR 344
WP_083457196 365 ALLERSAT---------------------GDAITTYHLESAIAALHASARSvDETDWRTIVTLYDRAMQLAPSPVIALNR 423
WP_099093323 276 VHLAAAAE---------------------GDALSEYHLQAGIAATHCLAPDyLSTDWDLILRHYDELLRLKPSPVVALNR 334
WP_096054757 304 VQLAQAAQ---------------------GKTLSEYHLQAGIAACHCMAPTyEATDWARILRLYDDLQSIKPSPVVAMNR 362
WP_015796784 379 AVAVGMAEGPAAGLAITDALTglraMQGYHLLPSVRGDLLVRLgRPAEARAEFERAAGLTANTRERALLLARAAACEA 456
AKV03963     340 GLALAELHGLDVGREALAALAgepkLAEYSFFWAARADVERRAgRTVEAHELYRRAIALAKSRAERLSYEKRLR---- 413
AKV04488     338 AIAVGQLEGPERGLEALDAIAgkerLADYPFYPAAVAEFSLRLgRMSEARRSFEEAFALARNDAERRFLRKRLERISD 415
WP_012376153 361 AVAVAEVHGPKAGLDALAAMPrrerLDSYYLLHAVSGEFHWRLnQRPQAIACFRKARDLARVGPEQLYLDRLLERLAG 438
WP_009512456 375 AVAVAHVRGPRAGLDAITAIPqrdrLEAHYLLHAVTGELYWRLqDHRAAAASFRRALQLARVEPEQVFLSRLLERVNR 452
WP_104022192 333 AIAVAERDGAACGLAALHAITdrerLAGYPFYAAALGELELRAgNRAAAREHFTAALGTARNEAERRFLERRIADCA- 409
WP_025227635 345 AIAVAQLRGPAEGIEEIRAISererLDRYPFYWAAIGELESRRgDFPEAREAFLKARDLARNPMERHFLSKRIADYSA 422
WP_083457196 424 AIAIAQRDGPEHGIRAIEAIPdrarLARYPFLPAALGELERRRgDLDGARAHLRAAIALARSDAERRFLERRLDAITP 501
WP_099093323 335 AVAVANRNGPQAGLDALAAIAqrekLETHYLLHAVEGELRWRLgEPAAAAAGFRRALALAQVGPEKAHLTRMLERCEA 412
WP_096054757 363 AVVVAHLHGPQAALDAIAAMPqrerLESHYLLHAIVGELNHRLgQHEAAVKSFRRALQLAKVGPEQTHLARMLERSEG 440
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