3FIN,1PNU


Conserved Protein Domain Family
L3_bact

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TIGR03625: L3_bact 
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50S ribosomal protein uL3, bacterial form
This model describes bacterial (and mitochondrial and chloroplast) class of ribosomal protein L3. A separate model describes the archaeal form, where both belong to pfam00297. The name is phrased to meet the needs of bacterial genome annotation. Organellar forms typically will have transit peptides, N-terminal to the region modeled here.
Statistics
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PSSM-Id: 274684
Aligned: 96 rows
Threshold Bit Score: 206.565
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3FIN_E         3 GILGVKVGMTRIFRDD-RAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLP-QNP-----KRVNRPLKGHFAKAGVE-P 74  Thermus thermop...
WP_000395331   2 EFLVQKIGMSRTIDANsT--PVTLLKVLQAKVCQLE----NGKALVAYAMHK----------KYNKAIEGQQKKYQLSkE 65  Helicobacter py...
WP_011371922   2 EYIVEKIGMSRTITVPsK--PVTLLRVLDAKVCEVN----ENSAIVAYKSGK----------KMNKAIEGQQKKYSISsE 65  Sulfurimonas de...
WP_002779987   2 EYIVEKIGMSRTITn--PSIAVTLLRVVNAKVCEVE----GGKALVAYPKGK----------ASNKCVAGQQKKYNLSaE 65  Campylobacter
WP_011165352  17 GLFAFKEGMATIYNENgEAVPVTVLRYEPWFVSQIKTNEADGYEAIQVACHP-KKA-----KNSNKAEKGHLEKAGFEnG 90  Bdellovibrio ba...
AAP98602      22 SVMGKKEGMIHIFDKDgSLVACSVIRVEPNVVTQIKTKESDGYFSLQIGAEEmNAPahtitKRVSKPKLGHLRKAGGR-V 100 Chlamydophila p...
WP_010881636   3 GLIGQKVGMTQIFDARgCVTPVTVIRVEHNVVVGLKDVERFGYSAVILGTGC-MKK-----SRISKPYAGQFAE-RIP-P 74  Treponema pallidum
WP_002669995   3 GLIGKKIGMTQIFNEVgHLMPVTVIQVEPNTVVALKDKEKFGYSSVVLGLGE-LKE-----KHTSKPYAGQFS-GDIK-P 74  Treponema denti...
WP_002557069   3 GLIGKKVGMTQIFQKNgIVVPVTVIEFQPNYIIGKKTVDRDGYSALIAGSVD-LKS-----SKVSKPIKGQYKSLKDIeP 76  Lyme disease sp...
WP_011686823   4 GILGKKIGMTQIFRPDgQVVPVTLLKAGPCMVVQRKTPSTDGYDAVQLGLVEfIKP-----QRINKPTAGRLKKAGVE-G 77  Candidatus Soli...
3FIN_E        75 VRILREIRDFN-P-E----GDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAhKIHRHPGSIGNRKTPG 148 Thermus thermop...
WP_000395331  66 FNHFATLKAS----QqkelGD-LDLSALETLKRVKASFKTKGRGFAGVMKRWNFQGGPAAHGS-RFHRRPGSIGNREWPG 139 Helicobacter py...
WP_011371922  66 FNRFVTLEV-----AnseaGD-IDLTPLAEAKVIKATFTTKGRGFTGAMKRWNFSGGPAEHGH-RFGRRTGSIGNAEWPG 138 Sulfurimonas de...
WP_002779987  66 YNRFATLEV-----AnteaGD-LDETPLNEAKILKVSFNTKGRGYSGVMKRHNFAGGPASHGS-RFHRRHGSIGNREWPG 138 Campylobacter
WP_011165352  91 AQFVKELRQAA-P-EgtvvGAQISIDSLAKGDFVKITSKSKGKGFAGSVKRWGFAGGPASHGS-KFHRRPGSSGNRTWPG 167 Bdellovibrio ba...
AAP98602     101 FRFLKEVRGSEeAlNgvslGDAFGLEVFEDVSSVDVRGISKGKGFQGVMKKFGFRGGPGSHGS-GFHRHAGSIGMRSTPG 179 Chlamydophila p...
WP_010881636  75 VRVMREFRGFT---LdvsvGQVLDVRVLESVRYLDVCALSKGKGFQGVVKRWGFSGGRSSHGS-KFHREAGSTGQCTSPG 150 Treponema pallidum
WP_002669995  75 LKLLKEFRDFD---KevavGDKLGVEAFEKVSYLDITAISKGKGFQGVMKRWGYGGGRASHGS-KFHREAGSTGHCTTPG 150 Treponema denti...
WP_002557069  77 KRYVIELKGL----DgydaGDEIKVDVFKSVKYVDVTGTTKGKGFQGAMKRHNFSGGPSSHGS-KFHRHLGGTGQATTPA 151 Lyme disease sp...
WP_011686823  78 AKFMREFTLGP-GsDdlktGDQVLVDQFKPKDKVDVVGISKGKGFAGVVKRHHFRGGEGSHGS-MFHRAPGSIGASSFPS 155 Candidatus Soli...
3FIN_E       149 RVYKGKKMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGPNGGLVIVR 199 Thermus thermophilus
WP_000395331 140 RVQKGRKMAGHYGNELVTCQN-EVLSFDKESMVLVLKGSVAGFSGAYGRIR 189 Helicobacter pylori
WP_011371922 139 RVMKGKKMPGQYGNTQNSVKN-EIISFDAENKIIAVVGSVSGANGSLGRVK 188 Sulfurimonas denitrificans
WP_002779987 139 RVQPGMKMAGHYGNTKVTVKN-EVVSYDAENKILVVKGAVPGYNGAMGKIR 188 Campylobacter
WP_011165352 168 RVMPGKKFPGHLGAETVTVKNVEVVQIIAEENVLMVKGPVPGARNTLVKLV 218 Bdellovibrio bacteriovorus
AAP98602     180 RCFPGSKRPSHMGAENVTVKNLEVIKVDLEKKVLLVKGAIPGARGSIVIVK 230 Chlamydophila pneumoniae TW-183
WP_010881636 151 RTFKNVKMPGRMGAERVTVQNLRIERIDVGLGVVMVRGAVPGRNKATVFLR 201 Treponema pallidum
WP_002669995 151 RSFKNTTMPGRMGFDKVTVQNLQIVKIDPELGVIMVRGSVPGKKDATVFLK 201 Treponema denticola
WP_002557069 152 RTFKGTKMAGRMGGNQQTIQNLEVVLIDEEKRALLVKGAVPGAKGSFVVVK 202 Lyme disease spirochete
WP_011686823 156 RVVPGMRMGGHLGNAQVTVRNLEVIDVDTEDNVLVVKGAVPGPNGGYVLVR 206 Candidatus Solibacter usitatus
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