Conserved Protein Domain Family
RNase_R

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TIGR02063: RNase_R 
ribonuclease R
This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA]
Statistics
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PSSM-Id: 273947
Aligned: 18 rows
Threshold Bit Score: 821.902
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P75529         5 TDLQKRIFAIVKKENGKPIPPGIVVRmmenQAGFPGKQQVYRAIDDLLEWHIfRKSGgaTNQLLINYELADpvldqKFQG 84  Mycoplasma pneu...
BAC44124      10 SPLESKILNILKDQNGKPIPINILFK----KLNYGNRSAVYSAIDYLTDNFFiEKLN--NGKLILGYTNGKildgqTFVG 83  Mycoplasma pene...
Q9PR88         2 SDFTKQTITEVISKEERPIPAAILAKkvleKIPTLNKTDVYKLIDLLIQENTiKKLE--NNRLVIGYLD-YefdheIKQG 78  Ureaplasma parv...
P21499        18 IPSREFILEHLTK-REKPASRDELAVel-hIEGEEQLEGLRRRLRAMERDGQ-LVFT--RRQCYALPERLD-----LVKG 87  Escherichia col...
P57628        18 IPSREYISSCLRT-SQDLISQKNLEKkf-gINNQESKKALRRRLRAMERDGQ-VIYT--SNRCYVAPESLK-----IVKG 87  Buchnera aphidi...
tigr:CBU1091  23 VPSREFIIQYLKE-INRPVSFKHLLSaf-dLKKAEEKEGLQRRLIAMERDGQ-VISN--RRGSYALVKELE-----LIRG 92  Coxiella burnet...
CAD19021      33 LPSREWIIELLER-KGVPSKIEALVRel-sIKE-EEYEFFERRLKAMARDGQ-VLIN--RRGAVCAADKLD-----LVKC 101 Neisseria menin...
AAO78183      19 KELAALLIDFFHAKPSETLSMKYIFSel-hLTTHPQKMLCADLLHDLSDDDY-ISEI--EKGKFRLNNHGT-----EMIG 89  Bacteroides the...
WP_010894445 107 IASREAILDLLDA-CDGPQTAEEIADrf-gVT--DRIEILGRRLGAMVRDGQ-LVQN--RRGGFAPVQHTN-----LIAG 174 Xylella fastidiosa
WP_011005669  32 LPTREEVLKYIEENPDR-AGKRELAKaf-nIKG-DARVYLKDLLRELADEGL-VEK---RARKLSRPGSLP-----SVAV 99  Brucella melite...
P75529        85 ILNLGNKNTGFV--RPLD-DDKTVYYIHFSNLAGALD-------------GDLVEFCPLDKPQV-GDKFDAAVLKIVKRS 147 Mycoplasma pneu...
BAC44124      84 TIIINGKADAFF--KIKD-EKESFAYINKKNLNSALN-------------NDTVEICLMDKNTY-PDLQDAVVTKIIERD 146 Mycoplasma pene...
Q9PR88        79 IITINSKGDGFI--KE-D-NTEIEYYVNKKYLNGALK-------------KDSVKFVKLKKEPK-NNLQDAAVIEIVGHA 140 Ureaplasma parv...
P21499        88 TVIGHRDGYGFL--RVEGrKD--DLYLSSEQMKTCIH-------------GDQVLAQPLG-ADRkG-RREARIVRVLVPK 148 Escherichia col...
P57628        88 KVIGHRDGYGFL--RTETlKE--DLWLSSEQMKSCIH-------------GDIILAHIVE-THGkR-RSSARFLKLLQPN 148 Buchnera aphidi...
tigr:CBU1091  93 RVQAHRDGFGFL--IPDDgSV--DIFLPAREMRMVFT-------------DDIVLVRITN-PKEr--RPEGAIVEILERN 152 Coxiella burnet...
CAD19021     102 RVEAHKDGFGFA--VPLTpAKDGDFVLYERQMRGIMH-------------GDIVTVRPAG-MDRrG-RREGTVLDIVERA 164 Neisseria menin...
AAO78183      90 TFQRKSNGKNSF--IPEGg--GDPIFVAERNSAHAMN-------------NDKVKITFYAKRK--NKDAEGEVIEILERA 150 Bacteroides the...
WP_010894445 175 TVIANPDGFGFL--KP-D-EGGDDLFLPPFEMRKVMH-------------GDRVLVNLTG-IDR-RGRREGMIARVLERR 235 Xylella fastidiosa
WP_011005669 100 LDITGRDEDGGLlaRPAE-WDEASHGKPPVVLLRRTRlnktsesgpvvgvGDRVLAKIFRNEDHaGPDFSARVMKRLEHH 178 Brucella melite...
P75529       148 RVLYAGNFLIE-YSdf---gQEFRIVADNPrFYLTPIVNKas-vPAELESNTKVAFQIDEYDp--aNNLCKVSIQQILGN 220 Mycoplasma pneu...
BAC44124     147 RDFFTGTYYLK-PTrnkfkkGIELIVPDDKkINLKIELDD----SSDLVNGNKVLFKIARIS----DGVIYCSVSKILGH 217 Mycoplasma pene...
Q9PR88       141 KDHYVGQFITL-Pn------GGYYIFVDDPlFYLNINLKD----TTGLVNGHKILFKIISQT----TKDAIAELVHIIGH 205 Ureaplasma parv...
P21499       149 TSQIVGRYFTE-AG------VGFVVPDDSR-LSFDILIPPd--qIMGARMGFVVVVELTQRPt--rRTKAVGKIVEVLGD 216 Escherichia col...
P57628       149 NILIVGRYYID-DK------IKFVIPDDTR-FNFKIFIFSai--kDDISIGSIVSVKLKQHPi--rNSRVQGFIVEILGK 216 Buchnera aphidi...
tigr:CBU1091 153 THQVVGRYFEE-GG------IAFVDPNHKL-ITQDILIPPg--qQGEAKTGQFVVAEITVQPt--kRRQAMGRIIEILGD 220 Coxiella burnet...
CAD19021     165 QSKVVGRFYMD-RG------VAILEPEDKR-LNQSIVLEPdgvaRFKPESGQVIVGEIEVYPe--qNRPAVAKIIEVLGD 234 Neisseria menin...
AAO78183     151 NDTFVGTLEVA-KS------YAFLVTENRT-LANDIFIPKe--kLKGGKTGDKAIVKVTEWPdkakN--PIGQVIDILGV 218 Bacteroides the...
WP_010894445 236 MSRLVGRFFYE-LG------IAYVEPDDKR-LQRNVQIPPe--hIGGASEGQLVVCELVVPPd--tRRPAIGRILVVLGE 303 Xylella fastidiosa
WP_011005669 179 ANAVLGVVRKLgNG------EWRLEPVNRK--QGEVQLDPa--mLENAESGDLVEVELLSARr---YGLPRGKVRQVVGS 245 Brucella melite...
P75529       221 NDEPLINLKAIMLDHSIVFEDNDVVEQQAAKLQFDEKEQSKPYRKDLTELAFVTIDPATSKDLDDAIYVKRTDK----G- 295 Mycoplasma pneu...
BAC44124     218 IDDVGNDIISIVYDNNIDPEFDEETKEETSKIDFGFSQEEDAKRKDLSHINFVTIDPATSKDMDDAVCVVKNKD----Gt 293 Mycoplasma pene...
Q9PR88       206 KNDVGSDVLSIVYDNGIDPTFDPQVVDLASKLEFYVDEHQNKIRRSIIDREIISIDPVGSKDIDDAVYVKKLND----Qr 281 Ureaplasma parv...
P21499       217 NMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG----Gg 292 Escherichia col...
P57628       217 EMGTNLAIEIALRTHLIPSLWSKEVKKQVYEISRKINQYDFKNRTDLRHFPFFTIDDEDARDFDDAVFCKRKAN----Pe 292 Buchnera aphidi...
tigr:CBU1091 221 QLTPGMEVELAIRTHELPYRWPNEVLREAKKLPVELMEYDKKGRKDLRKLPFMTIDGEDARDFDDAVYCESK-S----Sg 295 Coxiella burnet...
CAD19021     235 YADSGMEIEIAVRKHHLPHQFSEACAKAAKKIPDHVRKSDLKGRVDLRDLPLVTIDGETARDFDDAVFAEKIGR----N- 309 Neisseria menin...
AAO78183     219 AGDNTTEMHAILAEFGLPYVYPKAVETAADKIPAEITPEEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKD----Gl 294 Bacteroides the...
WP_010894445 304 ALTPSLVVETAIHGHQLPHVFSQEVLDAAAAVPLTVESGMVGGRVDLRALPLVTIDGEDAKDFDDAVYCESNRW----G- 378 Xylella fastidiosa
WP_011005669 246 IDSEKALSMIAIHEHEIPHVFPDEVLREAETAGPAT----LEGREDWREIPLITIDPADAKDHDDAVYAEPDTDpenpGg 321 Brucella melite...
P75529       296 --FVLYVAIADVAYYVQRNSELDIEARHKTSSIYLPGyYVVPMLPERLSNELCSLNPNEKRYVVVCELNFDHEARLNFSE 373 Mycoplasma pneu...
BAC44124     294 --YKLYVAIADVSYYVKLHSNLWRSALKRGTSIYLVN-QVIPMLPHKLSNNICSLNPFEKRYAQVCEMDIDKNGEFTNIQ 370 Mycoplasma pene...
Q9PR88       282 --YFLGISIADVSFYVQPNTILDADAFKRGTSTYLVD-RVIPMLPHNISNNICSLNEGEFRMCITCDMVIDKDGKICWKD 358 Ureaplasma parv...
P21499       293 --WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPS-QVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYK 369 Escherichia col...
P57628       293 egWILWVAIADVSCYVQPNTPLDKAALERGTSVYFPS-LVIPMLPEKISTDLCSLKPNVERLCLICEMSLSKQGELISYK 371 Buchnera aphidi...
tigr:CBU1091 296 --WKLYVAIADVSHYVSRESALDKEGQLRGNSVYFPS-KVIPMLPEALSNNLCSLVPNKDRLAIVCEIHLTAKGKVSKYQ 372 Coxiella burnet...
CAD19021     310 --YRLVVAIADVSHYVRPDDAIDTDAQERSTSVYFPR-RVIPMLPENLSNGICSLNPHVERLCVVCDMVITYAGNIKEYR 386 Neisseria menin...
AAO78183     295 --WEVGVHIADVTHYVKEGGIIDKEAEKRATSVYLVD-RTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSR 371 Bacteroides the...
WP_010894445 379 --FRLVVAIADVSHYVRPGTPLDEEALTRATSVYFPG-FVVPMLPETLSNGICSLKPSVDRMCFVCEMQIDRKGEVKSSS 455 Xylella fastidiosa
WP_011005669 322 --QVVIVAIADVAAYVRPGSALDREAQKRGNSVYFPD-RVVPMLPKRISNDLCSLREMEDRPALAVRMIFSADGRKKSHK 398 Brucella melite...
P75529       374 VYPATIVSQRRFAYSEVNDWLEDSDALKDES--A-TVLESLKAGFTLSELIAEQRKKKGTIDLSHSETEVVVDQNYYPIE 450 Mycoplasma pneu...
BAC44124     371 VYPAIIFSKYKFAYDNVNDYIKLKKKIEEVP--D-EIYEMLNTSFELDDYLNKKREKDGYINFDIKEAKIILDENEKIKD 447 Mycoplasma pene...
Q9PR88       359 VYPAIMKNYRQMSYDEVNDFYEGKSRFESAT--L-TMKEMLLEAKELHHILRNKKIKDGYVDFDIKEPKIILDETGVPID 435 Ureaplasma parv...
P21499       370 FYEAVMSSHARLTYTKVWHILQGDQD--LREqyA-PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIER 446 Escherichia col...
P57628       372 HYEGIICSHGRFTYNEIFKIWNGDIFLRSKYk---KFLKDIENLSCLQNIFNKDNISKKGIYFENIEPKFVLDSNLRIKS 448 Buchnera aphidi...
tigr:CBU1091 373 FYEAVIHSHARLTYTQVAAMLRGEKT--KNEe----MLPHIKNLDQLYQNLLRQRINRGAIEFETTETRIQFDQKGKIKR 446 Coxiella burnet...
CAD19021     387 FYPAVMRSHARLTYNQVWKWLSG-----GIEh---PFKTQIDTLYKLFKILQKKRFERGAVEFDSIETQMLFDDNGKIEK 458 Neisseria menin...
AAO78183     372 IVHTVINSDRRFTYEEAQQIIETKT--------G-DFKEEVLMLDTIAKALREKRFAAGAINFDRYEVKFEIDEKGKPIS 442 Bacteroides the...
WP_010894445 456 FYEAVMNSHARLTYTQVWKAVGEEDAQAQAQ--MgALLPQVQQLHRLYQVLAKARAQRGAIEFESSEVRFVLDNRGEVTQ 533 Xylella fastidiosa
WP_011005669 399 FHRIMMRSAAKVAYGQAQAAIDGAPD-DKTG--P-ILDTVLKPLWNAYAVLKRGRDAREPLELDLPEKKILLTPEGKVDK 474 Brucella melite...
P75529       451 IRFLTHGKAETMIENLMVVANEAVAW----------TLTNHKVHLPYRVHPRPSKKKLQMLLENIVELKITQPnFVLDTV 520 Mycoplasma pneu...
BAC44124     448 VVIRETGPAQKMIENFMVAANEAVTLk--------fHQLCPNLPFVYRVHAKPEEKRINDFKIEADKIGFIYD-RNLTSW 518 Mycoplasma pene...
Q9PR88       436 IKIYERKTAQMMVEDFMIAANEAVTMfaeehmdktlKEFNLEMPFIYRVHDKPSIINLQKFEIEAKKLSFNIS-HDFENI 514 Ureaplasma parv...
P21499       447 IEQTQRNDAHKLIEECMILANISAARfv----------ekAKEPALFRIHDKPSTEAITSFRSVLAELGLELPgG--NKP 514 Escherichia col...
P57628       449 IYQNIRNDAHKFIESCMILANVASARfv----------ekYKYPVLFRNHDRPKKDNVVSLRLFLNELGFTLLgG--DSP 516 Buchnera aphidi...
tigr:CBU1091 447 IVPVVRNEAHRIIEECMLVANVSASHfl----------qeKNIPTLYRVHEGPDEQKLHDLKQFLRAFGLRLTgG--DKP 514 Coxiella burnet...
CAD19021     459 IVPVVRNDAHKLIEECMLAANVCAADfl----------lkNKHTALFRNHLGPTPEKLAALREQLGLLGLQLGgG--DNP 526 Neisseria menin...
AAO78183     443 VYFKESKDANKLVEEFMLLANRTVAEkvg-----rvPKNKKPKVLPYRIHDLPDPEKLENLSQFIARFGYKVRtSgTKTD 517 Bacteroides the...
WP_010894445 534 AGMLMRNDAHKLIEECMIVANVQAAH----------FLLNAGVQAPYRIHERPPESKYADLLEFLKEFKLSLPaWG--KV 601 Xylella fastidiosa
WP_011005669 475 VIVPERLDAHKLIEEFMIQANVSAAE----------TLEGRHQPLIFRIHGEPALAKQETLREFLRTLDLNLAkG--AQL 542 Brucella melite...
P75529       521 TSTQIAAWLKENKDNPSYDIFVILLLRTLGKAFYIVNPLIHFSIGSHHYTHFTSPIRRYADLTVHRLLWMNLFTPERFT- 599 Mycoplasma pneu...
BAC44124     519 KPNTVSKWLEKNKNNPNKDLINMILLRTMAKAKYQTANLGHFGLSISNYTHFTSPIRRLADVIVHYLLRMFVYEPENYS- 597 Mycoplasma pene...
Q9PR88       515 QPNTISNWLKMNDNHVNLPLISKLLLRSMAKASYEIINTGHFGLASDNYTHFTSPIRRYPDLIVHRLLWMFIFDSQSYT- 593 Ureaplasma parv...
P21499       515 EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG-Hq 593 Escherichia col...
P57628       517 ESVHYSNLLKNVSDRPEYEMIQTVLLRSMTQAVYSPDNRGHFGLSLSSYVHFTSPIRRYPDLILHRVIKYLLFKDKNTSk 596 Buchnera aphidi...
tigr:CBU1091 515 TPMDYAKLLLRIEKRPDAHLLQTVMLRSLRQAIYTPEDGGHFGLSYERYCHFTSPIRRYPDLLVHRGIRHALQKKSP--- 591 Coxiella burnet...
CAD19021     527 SPKDYAALAGQFKGRPDAELLQVMMLRSMQQAVYEPHCDGHFGLAYEAYAHFTSPIRRYPDLTVHRAIKAVLNQQTYTPk 606 Neisseria menin...
AAO78183     518 ISKSINHLLDDIHGKKEENLIETVSIRAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDGG---R- 593 Bacteroides the...
WP_010894445 602 QPGDFTKLLKKVRERPEAALLESVLLRSQSLAVYSAENRGHFGLALDGYAHFTSPIRRYPDLLVHRAIKHALSGAAP--- 678 Xylella fastidiosa
WP_011005669 543 QPAQFNRILAAVDGTDHQELVNQVVLRTQSQAEYSPDNIGHFGLHLRRYAHFTSPIRRYADLIVHRALIKALGLGTDGLt 622 Brucella melite...
P75529       600 DTE-----REQLNAELEQICETINDTEIKINGCERTANDYLTTLYLSKQVGQTFHGFISAITSFGIFMRMDEnNFDGLIK 674 Mycoplasma pneu...
BAC44124     598 EQE-----KDYILCNLDDFCLKANSCEVLAVETERDVNAMKFAEYMKEKIGCEYNGFVSYITNFGVFVQLEN-TIEGLVK 671 Mycoplasma pene...
Q9PR88       594 DKQ-----RVELVNKLKLITEESNKNEIIAVKTERDVNAAKFAEYMNLHIGKEFIGVVTTVSSFGVFVELEN-TIEGLIR 667 Ureaplasma parv...
P21499       594 GNTtetggYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDlFIDGLVH 673 Escherichia col...
P57628       597 SNYnfysaHLYSTGEIKKIGAHCSITERRADEANRDVIDWLKCDFMYKKIGCILNGVISNVTTFGFFVRLNQfFIDGLVH 676 Buchnera aphidi...
tigr:CBU1091 592 KK------FHYDNPKLGELGEHCSMTERRADRATREAVDWLKCEYMMNKIGQAYAGHIVDVTGFGVFVQLDQiYIEGLVH 665 Coxiella burnet...
CAD19021     607 KS-------------WQALGVHTSFCERRADDASRDVENWLKTYYMRDKVGEVFEGKISGMTSFGIFVTLDGiHIDGLVH 673 Neisseria menin...
AAO78183     594 ---------SVSESKYEDLCDHSSNMEQIAANAERASIKYKQVEFMSERLGQIYDGVISGVTEWGLYVELNEnKCEGMVP 664 Bacteroides the...
WP_010894445 679 -ER-----FLYTPRDMVALALVCSSRERRADEAEREVDERYRAAWMERHVGSEFDGVISGVTSFGLFVELEQsKVTGLVH 752 Xylella fastidiosa
WP_011005669 623 SAE---------EAQLEEISALISATERRAMLAERETVDRLIAHFLASHLGDEYEGRVTGVTRAGLFVNLATyGADGLVP 693 Brucella melite...
P75529       675 ITSIPEDFFVFEKDRMVLRGKRTNKVFRIGDRLTAKLTEIDTVQKRAILTLV 726 Mycoplasma pneumoniae M129
BAC44124     672 PMFIKDDYYVFNQKDLTYVGRNKNRVISLGQKVKIRVVDANKETKKIDFEII 723 Mycoplasma penetrans HF-2
Q9PR88       668 IKNLKDDFYDFIPENMTLVGQKRKKIITVGNKVRVRVIEANKLTRKIDFELV 719 Ureaplasma parvum serovar 3 str. ATCC 700970
P21499       674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 Escherichia coli K-12
P57628       677 INSLNDDYYYFDSLGLKLIGKSTKNTYCLGDALKVKVISVNLNEKKIELSLY 728 Buchnera aphidicola str. APS (Acyrthosiphon...
tigr:CBU1091 666 ITALENDYYHFDPVHHLLRGKRSGRVYRLGDTIRVIVARVDLDDRKIDFVLE 717 Coxiella burnetii RSA 493
CAD19021     674 ISDLGEDYFNFRPEIMAIEGERSGIRFNMGDRVAVRVARADLDDGKIDFVLI 725 Neisseria meningitidis
AAO78183     665 IRDLDDDYYEFDEKNYCLRGRRKNKIYSLGDAITIRVARANLEKKQLDFALI 716 Bacteroides thetaiotaomicron VPI-5482
WP_010894445 753 VTQLPQDYYSFDPIRKVLVGQRRGRVFRLGDRLRVLVLKASMEERKIDFRLV 804 Xylella fastidiosa
WP_011005669 694 ISTLGDEYYLYDEANHAIAGERSGRGFRLGDTVTVRLVEALPVAGAVRFEMV 745 Brucella melitensis
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