Conserved Protein Domain Family
PBP1_ABC_sugar_binding-like

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cd06316: PBP1_ABC_sugar_binding-like 
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Statistics
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PSSM-Id: 380539
Aligned: 29 rows
Threshold Bit Score: 338.058
Created: 9-Jan-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic transport protein receptor for D-glucose and D-galactose

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     #                                                               
SFN51242   84 RASILWhel-----ssWTKALQAGIEDQLaelGVEVVSTSdakFDAATQANQIETTLAlQPDVILGQAvdpttagAAYQP 158 Mycetocola sp. CGM...
GAC21187   58 TAALAWhga-----spWINAVNRGASDTFeryGVKVLVTTdaqYDPAKQVADIENIQAlNPDIVLSLVidgvsakAGFQK 132 Paraglaciecola arc...
EOS28632  101 KAAMIWaga-----seWYNAMTDGAKAEFekmGIEIVATSdaqFDPSKQATDIETSMAlKPDIILSLPvdpvsgtRAFSP 175 Lachnospiraceae ba...
SDF90071   79 TAAFVWhts-----seFVSAVEDGARQEFedlGIDVVASTqadFDAATQANNVQSVLAlDPDIIVTIAvdptsaaAAFQP 153 Actinotelluria bra...
GAE95024  380 TAAISFhyt----gaaWMELHQLGIKDVFnelGISLLAVTdahFDPEMQSKQLDSIMAfDPDIIIAIStednktsEAFKR 455 Gracilibacillus bo...
SHE59760  380 TAAISFhyt----gtaWSRLHEKGIKDEFnslGISLLAVTdahFDPVMQSKQLESLVTlEPDVIISIPtdptrtaDAYKK 455 Alkalibacter sacch...
KLN93634  354 TVGVSFhqg----ttlWAKLHEKGIRDVFnefDIPIVAVMnanFDAKLQNKQLESLIKmGVDAIISIPvdgtltsNVYRE 429 Enterococcus cecorum
SEP42007  367 KVALSFhys----gdeWTKLHEKAIKEVFsryGIWLLSVAdahFDPELQITQLEGIMMqHPDAIIAVPtde-ektAEKFK 441 Propionispora vibr...
KPJ81774   85 KYVIAYdqlnvsefddAIGFAIDYMAEEL---NMEYIHTYn-rFDASVQKDNVETILAkKPDIIAAVSvdpvvsgEAFRR 160 Spirochaetes bacte...
OMG51186  366 KVGISFhyg----gtaWTRLYENGIRHVLdqyGISIISITnagFDPNLQVTQLEGLRMqKPDAIIAIPvdd-eltAKKFK 440 Paenibacillus mace...
Feature 1                #                                                         #          
SFN51242  159 AVDqGVKLIFADqapdaythgdqyqaVLTDDLFQIGERAANQLGeal--ggtGEVAVLYYdaEFHVTNFRDAAFLSTlak 236 Mycetocola sp. CGM...
GAC21187  133 IVDaGSKLVLLSnpisgfvhgkdfagIVTDDMQGMGNRAAEVTNeyl--qgsGKIGMVFHdaNYFITNTRDKAFVDGla- 209 Paraglaciecola arc...
EOS28632  176 AVDaGAKIVFADngvndykageqyvsIVTGDQYGMGRAAAKLMAesi--ggkGKIGIIYYdvDYLVTNNRDNEFVRTivn 253 Lachnospiraceae ba...
SDF90071  154 AVDaGKTLVVMTtppagytagdqfvsIVTESLTEAGRANAEILGdal--ggsGQVGYIYHdaDFWFTNQRDEAFRNWlgy 231 Actinotelluria bra...
GAE95024  456 VAKsPSKLVLITnvprglt-qsdyvsCVSVNEWTHGRLAGSELGnsmrkynrRNVGFISYdsNFYATNQRDMGAHQIlle 534 Gracilibacillus bo...
SHE59760  456 IIQsKSRLVLITnvpdglk-pgdyvtCISVNEHSYGRSIGHGLGeymrqfnkTNVGMINYgmDFYATNQRDNAAEQIile 534 Alkalibacter sacch...
KLN93634  430 IIDnNIKLILITnvpknil-kgeyvtCISVNEQKNGAYIAQATGefmklnnlKYLGLINHgaDFFATKQRDASFKDTvee 508 Enterococcus cecorum
SEP42007  442 EISkKTKLIFINnmpkgfk-qddyacWISVNERENGQNAAMILKnyfqsqqnVKIGLLTHgtPFFATKQRDFFAEQTfre 520 Propionispora vibr...
KPJ81774  161 AADmGVTLVFCSvkaplewgtkynggLVFYDLIGFGPLLAEELNkvl--ggkGEVGIVFHqaNFFITNQRDQGFEDAlk- 237 Spirochaetes bacte...
OMG51186  441 NISeETKLIFMShvpegmt-kdeyscCVSVNERENGQNAALLLGnyfkneqnVKIGFIGHgaPFYGTHLRDAVANDTirs 519 Paenibacillus mace...
Feature 1                                                                      #              
SFN51242  237 nfPDIKVVAKQGFtd-pNKAEEIANALLTkhPNLAGIYTSWavpAQGVLSALKNAGnstTKIVTIDLDdtiATDLASGGN 315 Mycetocola sp. CGM...
GAC21187  210 lfPGIEIVSRQGFvk-eHDTSAIASAMMLrnPELELIYVSWdtaAEGVVQALRSDGfnkVKVISHDLGvnnLLDMAQQGN 288 Paraglaciecola arc...
EOS28632  254 dyPDIKIVAMSGFsa-eNATGEVASAMMTqnPDLNGIYVSWdvaAEPVVSELRAGGykdCKVVTMDLGgnnDLDMAQGGN 332 Lachnospiraceae ba...
SDF90071  232 eyPDMQIVAEEGFad-eARTEEVAAAMIArnPDITGIYVSWataAQGVVSALRNAGrsdVKVVTNDLDatlAADMVDGGN 310 Actinotelluria bra...
GAE95024  535 eyPDLNIVKEVKFkk-eEDVYEDTIQLLKkyPEIQGLYISWegpATKVLEAVNSIGrkdIIIVTSDLDyslALNMAEGGN 613 Gracilibacillus bo...
SHE59760  535 eyPELVVCGKVSFdn-eEQVKEKTVELMNahPDIGGIYVSWggpAMSAVEALLEMGrtdVVLATGDLEfdlALNMAKGGM 613 Alkalibacter sacch...
KLN93634  509 efPEIEISGSVYFhd-iDNVKKVTKKLIQnnPIIEVLYICWeepARAAMEVLKEMNredIKIFTSDIGietAELILDEKN 587 Enterococcus cecorum
SEP42007  521 csPNIKIVAKRDFfa-iDNAYEVCKQMIQenPEIQGLYITWerpALKAIKALEDMSrtdIVIATTDLDyeiASYMANKKM 599 Propionispora vibr...
KPJ81774  238 kyPGLKIVDKRPTgntiQDTEAIVSAMITkhPDVDGIYLPWqehVMPAISALRAADredIKIVTQDIGkttALEMIRGDN 317 Spirochaetes bacte...
OMG51186  520 nfRNIEIVDEQYFyq-iEKTYDVCKEMIKrhPEIQGLYISWdrpALEAIKALQELKredVAVFTFDLDteiATYLAKEEM 598 Paenibacillus mace...
Feature 1           #                                                       
SFN51242  316 VVAIVADRaYDYGRAMAVSAALAILgq-paPAFGVTDSVTVTKSTIAEGYe-aWNQPVPATV 375 Mycetocola sp. CGMCC 1.11101
GAC21187  289 MLASISDRpYEIGSTMARIALLAKLge-smPLFTLVPYDQVNKSNITEVWqhaYHTHVPRII 349 Paraglaciecola arctica BSs20135
EOS28632  333 VYGKVADMpFQIGETMAKLAALSILge-daPAYVVSETVSMTRDNMVEAWnqsLNKDPDSSV 393 Lachnospiraceae bacterium 28-4
SDF90071  311 VVGLVGNGsIDIGRGLALAAAYGVLdk-qaPALVASPPVKVTTDNLEDAWredYGTDLPSSV 371 Actinotelluria brasiliensis
GAE95024  614 VKAVSAQLpYEQGQAIALVAANALLnk-dvPKFIGVEPIKVTCENLLKSWkriFKRTPPKSI 674 Gracilibacillus boraciitolerans JCM ...
SHE59760  614 VKAIGAQRpYEQGQAMALAAANSLLgk-evPSFVGLEPLYVTRENILKTWkiiFKEMPPREL 674 Alkalibacter saccharofermentans DSM ...
KLN93634  588 IIATSSQRfYEQGRAMALATINSFLek-klPSFIAIDPYLINKENLDRGWeviAKEKLPINI 648 Enterococcus cecorum
SEP42007  600 VIGLSSQQpYDQGIAVAIATAKSLLgk-neYKCIGVPPYTVVPKNLTRAWqdlIKTKAPDFK 660 Propionispora vibrioides
KPJ81774  318 IAMMTQCMaWQYGVTVTEMGCYAILgkeipAECIIVPGLASTWKTIDQVWprvFNTPLPKEL 379 Spirochaetes bacterium DG_61
OMG51186  599 VKGLSTQRpYDQGIAVGLATAKALLgh-deHKYIGVPPYIVEPKNLLKAWkniVLEPAPAEI 659 Paenibacillus macerans

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