1Z7N,1Z7M,1O63,1O64,1USY,2VD2,1VE4


Conserved Protein Domain Family
PBP2_HisGs

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cd13595: PBP2_HisGs 
Click on image for an interactive view with Cn3D
The catalytic domain of hetero-octomeric short form HisGs; contains the type 2 periplasmic binding protein fold
Encoded by the hisG gene, the ATP phosphoribosyltransferase (ATP-PRT, EC 2.4.2.17) is the first enzyme in histidine biosynthetic pathway that catalyzes the condensation of ATP and PRPP (5'-phosphoribosyl 1'-pyrophosphate), and is regulated by a feedback inhibition from the product histidine. ATP-PRT has two distinct forms: a hexameric long form, HisGL, containing two catalytic domains and a C-terminal regulatory domain; and a hetero-octomeric short form, HisGs, without the regulatory domain. HisGL is catalytically competent, but the hetero-octameric HisGs requires the second subunit HisZ, a paralog to the catalytic domain of functional histidyl-tRNA synthetases (HisRSs), for the enzyme activity. This catalytic domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Statistics
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PSSM-Id: 270313
Aligned: 46 rows
Threshold Bit Score: 223.558
Created: 16-Mar-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1Z7N; HisG catalytic domain of the Lactococcus lactis Atp-Prtase binds phosphoribosyl pyrophosphate (Prpp) substrate, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1Z7N_G         1 MIKIAITKGRIQKQVTKLLENADydvep--ilnlgRELQIKTk-dDLQIIFgkpnDVITFLEHGivDIGFVGKDTLDENd 77  Lactococcus lactis
YP_002250842   1 MIRIAIPTGRMLEQTLDFLRNFDkklld---eekgRKLRIRGe--RFEVFLakpwDLPLYVEERvvDLGIIGRDVILEQe 75  Dictyoglomus th...
1O63_A         2 LLKLAIPKGRLEEKVXTYLKKTGvif------ereSSILREGk--DIVCFXvrpfDVPTYLVHGvaDIGFCGTDVLLEKe 73  Thermotoga mari...
1O64_A         2 LLKLAIPKGRLEEKVMTYLKKTGvif------ereSSILREGk--DIVCFMvrpfDVPTYLVHGvaDIGFCGTDVLLEKe 73  Thermotoga mari...
1USY_G         1 MLKLAIPKGRLEEKVMTYLKKTGvif------ereSSILREGk--DIVCFMvrpfDVPTYLVHGvaDIGFCGTDVLLEKe 72  Thermotoga mari...
A5N7Q5         6 KIKIALTKGRIEKEAVKIFERAGvdcse--vinkgRKLIFHNmesNIDFVLvkapDVLTYVEHGvvDIGIVGKDTLLEQd 83  Clostridium klu...
YP_003316748   1 MLTMAIPTGRSMEDAAELLTKADilppd---tdpgRRLEIPLr--DMRIILvkpqDVPPLVHMGfaQLGLAGQDVILESg 75  Thermanaerovibr...
B9DQ89         1 MLTVALSKGRLLKDFIKFLERNNnhvwadaiihreRKLQITAd--SIKFILvkgsDVPTYVEEGiaDIGITGSDILKERp 78  Staphylococcus ...
Q8YVL0         1 MLTVALPKGELLKNSIRLLQSVGldfsaf-ldsgnRQLQITDasgTAKGLLvrgqDVPVYVEYGqaQIGIIGYDVLREKq 79  Nostoc sp. PCC ...
Q2YZB3         1 MLRIAIAKGRLMDSLINYLDAIEfttls--etlknRERQLLLsvdNIECILvkgsDVPIYVEQGiaDIGIVGSDILDERh 78  Staphylococcus ...
Feature 1                                                                         # #            
1Z7N_G        78 fddYYELLYLKIGQCIFALASYpdfsnk---nfqrhKRIASKYPRVTKKYFAqkqEDIEIIKLEGSVELGPVVGLaDAIV 154 Lactococcus lactis
YP_002250842  76 r-nLVNLLSLPFGYCKMVIAGYphisle---kngkeIKIATKYENIARKFLEdkwSKIKVIKLNGSVELGPILNIsDFIV 151 Dictyoglomus th...
1O63_A        74 t-sLIQPFFIPTNISRXVLAGPkgrgi-----pegeKRIATKFPNVTQRYCEskgWHCRIIPLKGSVELAPIAGLsDLIV 147 Thermotoga mari...
1O64_A        74 t-sLIQPFFIPTNISRMVLAGPkgrgi-----pegeKRIATKFPNVTQRYCEskgWHCRIIPLKGSVELAPIAGLsDLIV 147 Thermotoga mari...
1USY_G        73 t-sLIQPFFIPTNISRMVLAGPkgrgi-----pegeKRIATKFPNVTQRYCEskgWHCRIIPLKGSVELAPIAGLsDLIV 146 Thermotoga mari...
A5N7Q5        84 k-nFYEVLDLGFGKCKFSLAGLkdsnfy---sgynrKKIATKYPNVARSYFRklgQDVEIIKIEGSVELAPILGLaDAIV 159 Clostridium klu...
YP_003316748  76 a-rVAVLHDTGLCPCRMVIAGPpkareglmnspnrkLRVATKYVRTADQVLPqrgLRTVTVPLHGSVEIAPALGIaEVIM 154 Thermanaerovibr...
B9DQ89        79 nrnINNYIDLPFGECHFSVAAKpnv--------tniQRVATTYVKTTRDYFNqkgTDISIIQLSGSVELAAVVDMvDAIV 150 Staphylococcus ...
Q8YVL0        80 p-qVAHLVDLQFGYCRMSVAVKasspykspldlpahSRVASKYVNSAREFFQgldLPVEIVPLYGSVELGPITGMsEAIV 158 Nostoc sp. PCC ...
Q2YZB3        79 y-nVNNLLDMPFGACHFAVAAKpet--------tnyRKIATSYVHTAEAYFKskgIDVELIKLNGSVELACVVDMvDGIV 149 Staphylococcus ...
Feature 1        ### ####                                           
1Z7N_G       155 DIVeTGNTLSANGLEVIEKISDISTRMIVNKssfkfKKDKIIEMVERLEDA 205 Lactococcus lactis
YP_002250842 152 DIVeTGKTLKENGLEIKEVLFESSACLVSNVasfvyLRDEILSFVKEVRKL 202 Dictyoglomus thermophilum H-6-12
1O63_A       148 DITeTGRTLKENNLEILDEIFVIRTHVVVNPvsyrtKREEVVSFLEKLQEV 198 Thermotoga maritima
1O64_A       148 DITeTGRTLKENNLEILDEIFVIRTHVVVNPvsyrtKREEVVSFLEKLQEV 198 Thermotoga maritima
1USY_G       147 DITeTGRTLKENNLEILDEIFVIRTHVVVNPvsyrtKREEVVSFLEKLQEV 197 Thermotoga maritima MSB8
A5N7Q5       160 DIVeTGSTLKENGLVIYKDICSISARMVVNMasmkmKKEEIEKIINKVQVQ 210 Clostridium kluyveri NBRC 12016
YP_003316748 155 DIVqTGNTLKANGLSVLMELFPVTMRLIANPgalnlQWDRIRPMLERIREV 205 Thermanaerovibrio acidaminovorans DSM 6589
B9DQ89       151 DIVqTGTTLKSNGLEEREQIGEINARLITNKhsffsKSKAIENFIQQLGVS 201 Staphylococcus carnosus subsp. carnosus TM300
Q8YVL0       159 DIVsTGRTLKENGLVEITTLYESTARLIAHPlsyrlNTGNLHQLVEQLREG 209 Nostoc sp. PCC 7120
Q2YZB3       150 DIVqTGTTLEANGLVEKQHISDINARLITNKaayfkKSQLIEQFIRSLEVS 200 Staphylococcus aureus RF122

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