2CBR,1CBR


Conserved Protein Domain Family
CRABP1

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cd19460: CRABP1 
cellular retinoic acid-binding protein 1
Cellular retinoic acid-binding proteins (CRABPs) play a role in the metabolism of vitamin A and retinoic acid. They bind all trans retinoic acid, but not retinol. Retinol, the alcohol form of vitamin A, is an essential dietary nutrient. Within the cell, it gets oxidized into its biologically active acid form, retinoic acid, which interacts with the nuclear receptors (RARs and RXRs). The two CRABPs (CRABP1 AND CRABP2) differ in their pattern of expression across cells and developmental stages. Like other lipid binding proteins, CRABPs serve to solubilize and protect their ligand in the aqueous cytosol and transport retinoic acid between cellular compartments. This subgroup includes CRABP1 (also known as CRABP, CRABP-I, CRABPI, RBP5), which is thought to play an important role in retinoic acid-mediated differentiation and proliferation processes. CRABP1 has been shown to modulate stem cell proliferation to affect learning and memory. It has also been shown to regulate CaMKII, excessive and/or persistent activation of which is detrimental in acute and chronic cardiac injury. CRABPs belong to the intracellular fatty acid-binding protein (FABP) family, members of which are small proteins that bind hydrophobic ligands in a non-covalent, reversible manner, and besides CRABPS include the cellular retinol-binding protein (CRBPs) and the fatty acid-binding proteins (FABPs).
Statistics
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PSSM-Id: 381235
Aligned: 6 rows
Threshold Bit Score: 299.643
Created: 13-May-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:retinoid binding site [chemical binding site]
Evidence:
  • Structure:2CBR; Bos taurus CRABP1 with bound retinobenzoic acid, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      #        #   #  #       #              # # ##                ###  
2CBR_A         1 PNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKVGEGFEEETVDGRK 80  cow
1CBR_A         1 PNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKVGEGFEEETVDGRK 80  house mouse
NP_001025710   2 PNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKIGESFEEETVDGRK 81  chicken
NP_878278      3 PNFAGTWKMKSSENFDELLKALGVNAMLRKVAGAAAAKPHVEIRQDGEQFYIKTSTTVRTTEINFRVGEEFDEETVDGRK 82  zebrafish
P40220         2 PNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKIGESFEEETVDGRK 81  Gallus gallus
O42386         2 PNFAGTWKMKSSENFDELLKALGVNTMLRKVAVAAASNPHVEIRQDGEKFYIKTSTTVRTTEINFHIGEEFDEETVDGRK 81  torafugu
Feature 1                                               #          # #   
2CBR_A        81 CRSLPTWENENKIHCTQTLLEGDGPKTYWTRELANDELILTFGADDVVCTRIYVRE 136 cow
1CBR_A        81 CRSLPTWENENKIHCTQTLLEGDGPKTYWTRELANDELILTFGADDVVCTRIYVRE 136 house mouse
NP_001025710  82 CRSLATWENENKIYCKQTLIEGDGPKTYWTRELANDELILTFGADDVVCTRIYVRE 137 chicken
NP_878278     83 CKSLATWETENKMYCKQTLVDGDGPVTYWSRELRGDELILIFGADDVVCTRIYVRE 138 zebrafish
P40220        82 CRSLATWENENKIYCKQTLIEGDGPKTYWTRELANDELILTFGADDVVCTRIYVRE 137 Gallus gallus
O42386        82 CKSLPTWESENKIRCKQTLVEGDGPKTFWTRELNGDELTLVFGADDVVCTRIYVRE 137 torafugu

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