6WJV


Conserved Protein Domain Family
HFD_POLE4-like

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cd22929: HFD_POLE4-like 
histone-fold domain found in DNA polymerase epsilon subunit 4 (POLE4) and similar proteins
POLE4, also called DNA polymerase II subunit 4, or DNA polymerase epsilon subunit p12, may participate in DNA repair and in chromosomal DNA replication. It is an accessory component of the DNA polymerase epsilon complex that consists of four subunits: the catalytic subunit POLE and the accessory subunits POLE2, POLE3 and POLE4. POLE4 forms a complex with POLE3. The POLE3-POLE4 is a histone chaperone that promotes tetrasome formation and DNA supercoiling in vitro. Interaction with POLE3 is a prerequisite for further binding with POLE and POLE2. In fungi, POLE4 has been named as DNA polymerase epsilon subunit C (DPB3, also known as DNA polymerase II subunit C). It is an accessory component of the DNA polymerase epsilon (DNA polymerase II) that participates in chromosomal DNA replication. DNA polymerase epsilon is a heterotetramer consisting of POL2, DPB2, DPB3 and DPB4. DPB3 is required during synthesis of the leading and lagging DNA strands at the replication fork and binds at/or near replication origins and moves along DNA with the replication fork. It has 3'-5' proofreading exonuclease activity that correct errors arising during DNA replication. It is also involved in DNA synthesis during DNA repair. This subfamily also includes protein DLS1 (DPB3-like subunit of ISW2 complex 1). It functions as a component of the ISW2 complex, which at least consists of ISW2, ITC1, DLS1 and DPB4, and acts in remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. The ISW2 complex is involved in coordinating transcriptional repression and in inheritance of telomeric silencing. It is involved in repression of MAT a-specific genes, INO1, and early meiotic genes during mitotic growth dependent upon transcription factor UME6 and in a parallel pathway to the RPD3-SIN3 histone deacetylase complex. DLS1 is partially required for the ISW2 complex chromatin remodeling activity and is not required for its interaction with chromatin.
Statistics
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PSSM-Id: 467054
Aligned: 68 rows
Threshold Bit Score: 70.2348
Created: 26-Mar-2021
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimercatalytic
Conserved site includes 37 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:6WJV: Saccharomyces cerevisiae DPB3 forms a heterodimer with DPB4; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      #      #   #  ## ###### ## ### ############               #####           #    #
6WJV_3       9 APVFPISKVKKIAKCDPEYVITSnVAISATAFAAELFVQNLVEESLVLAQLnskgktSLRLSLNSIEECVEKRDNF--RF 86  Saccharomyces cer...
KAA6425629  99 MPGLPLTSVKRIMCTDEDVARVSgDCVKSMAKATEMFLELLASRGYAQAQRh----kRSTIKFCDIHLASIADKRLvdMG 174 Trebouxia sp. A1-2
Q6BX14      89 SLSLPLSKIKKIFKMDPDYLAASqSAVYATGLATELFIQYFTEQSLVLAKMd----kRKKLQYKDFSNAVASQDSL--NF 162 Debaryomyces hans...
GAX23752   130 GLTIPFRTVKKAMKLDPDTPIVQnEAAIMTTIAAELFLKRLAKESFHSAKLr----gRNTIRYEDIAEARTKNASM--TF 203 Fistulifera solaris
KDD76032    87 PTMLPISLVKKIMLLDPEVSRVSsEGLSAVSLVTTIFLGVLAEQAQQVATGa----kRKTLRFADVRDASRRYSRQcdMG 162 Helicosporidium s...
GAX82753   313 DSLLPLTAVRRIILADTDVCRVShEGIVAVAMATNLLLGILAKGVGNQARVq----kRKTVMLKDFSQALKQDRRLvqAS 388 Chlamydomonas eus...
PNH03499   436 LDVLPASWVRRVVGVDPDIHRCTaEAVLSLSAAADVFLSAMCAKAAAAAAGs----kRRTVKLEDVQHCVRTDKRLaaAG 511 Tetrabaena socialis
PSC76788   104 PFGLPTGSVKRIITLDSEVQRVSaDAVRAIAKAAELFVGALAVKSMEHAAAd----kRKNFKFADVEHVAGRDRRLqdMG 179 Micractinium cond...
GBF96987   131 GPALPRGVVKRIMACDPEFKRASaDAVWLISAAAEALLGLVAERAARQALSr----rRRTVKLEDMQHVIKYDRRLveAG 206 Raphidocelis subc...
QDZ18551    95 PPGLPTAVVKRLVLSDPELKRISaPALNLVINSAERFIGLMTQRSREVAITs----gKRTIRMQDILAVAREGGWRmaAI 170 Chloropicon primus
Feature 1      #  # 
6WJV_3      87 LEDAI 91  Saccharomyces cerevisiae S288C
KAA6425629 175 LKDMF 179 Trebouxia sp. A1-2
Q6BX14     163 LSDTV 167 Debaryomyces hansenii CBS767
GAX23752   204 LETLF 208 Fistulifera solaris
KDD76032   163 LYEGL 167 Helicosporidium sp. ATCC 50920
GAX82753   389 LRDVE 393 Chlamydomonas eustigma
PNH03499   512 FNAVT 516 Tetrabaena socialis
PSC76788   180 LREVL 184 Micractinium conductrix
GBF96987   207 LKDVV 211 Raphidocelis subcapitata
QDZ18551   171 LDHLK 175 Chloropicon primus

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