3EGO


Conserved Protein Domain Family
apbA_panE

?
TIGR00745: apbA_panE 
Click on image for an interactive view with Cn3D
2-dehydropantoate 2-reductase
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH-dependent enzymes, and enzymes with broad specificity, such as a D-mandelate dehydrogease that is also a 2-dehydropantoate 2-reductase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]
Statistics
?
PSSM-Id: 273247
Aligned: 27 rows
Threshold Bit Score: 220.25
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
3EGO_A        12 SVGLLCAYYLSLY--H-DVTVVTRrQ-EQAAAIQSEgirlykGGEEF------RADCSADTSinsDFDLLVVTVKQhQlq 81  Bacillus subtilis
AAK80879      10 AMGGLYGAYLSRKn---DVYMIDI-NeKVVKSINENgliiyeRENNKkekflvSAFTDSSNLg--PMDLVIIFVKNlYtt 83  Clostridium ace...
O67619        12 AIGSAYLAFLTRAg-H-EAAGLVR-R-NPVNRIKVEg-----IWGefe--ipvKTFTKVEEVp-fIPDIVIISVKSyDte 79  Aquifex aeolicu...
AAK79572      14 AVGCAYGRKLYKLn-PnNFKIIAD-D-KRKEKLTKNgf---lINGeky---dfKCVSPNENLg--KDDLIIIAVKYnQle 82  Clostridium ace...
AAD03849      11 AIGSFLSTRLHDAg-H-EVLLIAR-G-ARLEALRNMgvllseGGAERqvrvpvSAACDPATP----PDHAILATKTfQie 82  Novosphingobium...
Q9ABG6        11 AVGGTLAAWLAQKpdH-VVTVCVR---TPFEALAVEt-----PEGais--atpRVATSPESLa--pVDWVLVTTKTyDtd 77  Caulobacter cre...
Q8YX96        13 ALGGYYGAKLQKAg-S-DVHFLLK-S--DYEKVNQDgllvesKDGDFtlp-qvNAYNDVAKMp--KCDVVVVALKTtQnh 84  Nostoc sp. PCC ...
WP_003113573  15 AIGGFYGLMLAHAg-H-DVHFLLR-S-E-FEAVNRAglslnsAVHGFrrlapvQAYHSAQDMp--PCDWLLVGAKTtGnd 87  Pseudomonas aer...
WP_011712244  23 AVGGFYAARLAAAg-A-QVSVVCR-S--DYATIAQQgitihsFKFGEqhfhpySVHEQPETFp-gTPDYMLITLKVlPqi 96  Magnetococcus m...
WP_029317745  10 gvggYIGARLSEKg-N-DVTFLVR-Q-KRAEQLKKTglvihsEKGNVsfqpelI---SVGETg--QFDVVIIASKAySlg 80  Bacillus subtilis
3EGO_A        82 S-VFSSLERIGK-TNILFLQNGMGHIHDLKDWHvgH-SIYVGIVEHGAVRKSDT-AVDHTG-LGAIKWSAFDDAe----- 151 Bacillus subtilis
AAK80879      84 SaLKNNLNLFSDsTLVITLQNGAGNDRDLEKFIkkE-NILIGTTEHSCSILETG-EVSHNQ-EGITNIGMLVYNd----- 155 Clostridium ace...
O67619        80 EaLKKVKPVVGEnTFIMIAQNGYGNYEKAVEIYgeG-KVILSRIIFGSKVIKPGhIRITVS-ADEVVIGDPSGKid---- 153 Aquifex aeolicu...
AAK79572      83 EaIEEIRNYVGEnTIILSFLNGIKSEEEIGKVYgmD-KILYSYCVLESTRKGSE--VYVSD-GYKIVFGQKESDnk---- 154 Clostridium ace...
AAD03849      83 SaLALLEPLRGSrFTLLTVQNGVEAPGIAQAALp-R-AVVLGARMHGFFELEDG-IVRHTG-VPATLLAGPVADhatdpa 158 Novosphingobium...
Q9ABG6        78 AtWTWLDALVGPqTRVAILRNGVEHVAPFVGKIaaE-RLVPAVVDIPAERSAPG-RMLQRR-NGWIKVPVG--------- 145 Caulobacter cre...
Q8YX96        85 LlPKLLPPIVKNdGIVLVLQNGLGVEEEIAEILpqV-HIIGGLCFLCSNKVGAG-YIHHLD-YGQITLGEYAHGysnm-g 160 Nostoc sp. PCC ...
WP_003113573  88 ElAPLIRAAAAPgAKVLLLQNGLGVEERLRPLLpeSlHLLGGLCFICVHRGEPG-VIEHQA-YGGVNLGYHSGPad---- 161 Pseudomonas aer...
WP_011712244  97 DlAAMVAPKIGPnTTLLLIQNGIEIEEKLHQAFpnT-PMISALAFVCVSRTQPG-HIDHLC-FGHLSMGHYPPQpv---- 169 Magnetococcus m...
WP_029317745  81 QvIEDVKPFIHQeSVIIPFLNGYRHYEQLFAAFskE-QVLGGLCFIESALDNKG-EIHHTStSHRFVFGEWNGEr----- 153 Bacillus subtilis
3EGO_A       152 --PDRLNI----LFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNG-ELLttPAYLAFMKLVFQEACRILK 224 Bacillus subtilis
AAK80879     156 --NIIKRI----SDEFKACSLKTEVYQNIQEIIWSKLFINMALNSTTAILNCKVG-YLEksKDASEIVQSILSEAVDVAI 228 Clostridium ace...
O67619       154 -eEFLKNL----ARTFTEAGIPTRYERDVYKYLVDKIIYNSALNPLGALFEVNYG-SLAenpHTKELMNRVIDEIFQVIE 227 Aquifex aeolicu...
AAK79572     155 -yEKIKAV----RELFDDAEIDYEIPVDIIHSMWSKFMFNVGINPVSAILKANYG-MLQknkYARETMVSAMMEVINISQ 228 Clostridium ace...
AAD03849     159 agQASANL----AGDLIAAGVPTTLTGDMRPALWDKFLMAATIGAVAPAFGLKVG-QVLshPQASALLREAMAEVERIAT 233 Novosphingobium...
Q9ABG6       146 --PAGEAF----AALFAHTPIELHVVEDFVTEAWKKLALNC-AGAVNALVLKPAG-IAHdeG-AAQVMRSLVRECVAVGR 216 Caulobacter cre...
Q8YX96       161 itDRMQQI----SHDFQTAGISIELLEDLLLGRWKKLVWNIPYNGLSVVLNARTD-ELMadTYTRTLVEQLMYEVKAGAK 235 Nostoc sp. PCC ...
WP_003113573 162 -eRRRREIveegAALFRESGLESTAMPDLEQARWQKLVWNIPYNGLSVLLKSSTA-PLManADSRSLIEAIMEEVIGAAG 239 Pseudomonas aer...
WP_011712244 170 -qPALTQL----VQLFKHAQIDAHATDNVVTARWRKLVWNAPFNGVSVLAGGLNTrEIMddAPLQQLCRDVMAEVVDLAA 244 Magnetococcus m...
WP_029317745 154 -tERIRAL----EEAFSGVKAEVIISGHIEKDIWKKYLFIAAQAGITTLFQRPLG-PILatEAGRHTAQTLIGEICPVLR 227 Bacillus subtilis
3EGO_A       225 -----LE----NEEKAWERVQAVCGQTKENr-SSMLVDVIGGRQTEADAIIGYLLKEASLQGLDAVHLEFLYGSIKALER 294 Bacillus subtilis
AAK80879     229 -----ADgtffNKKEVIDKVQKCIREDLPNaiTSMNQDVSNKRLTEIDHINGAVANLAKLYKIPTPYNDCIIHIIHALEG 303 Clostridium ace...
O67619       228 kaklpCFwk-sADEYKKVFYEKLIPPTAEHy-PSMLEDVKKGK-TEIEALNGAIVELGKKYGVSTPTNEFITKMVKAKEL 304 Aquifex aeolicu...
AAK79572     229 -----KAsvnlKIEEINHWLAVLDECELHGk-TSMCQDILMGRKTEIDMLSGEVCALGEKYGVDTPVNRTLFNMVKSIE- 301 Clostridium ace...
AAD03849     234 -----ALgielPPDCIDEKLDFIGRFPPDVt-SSLQRNLEAGRPSEFVHLSGAIPRFARQADLPCPATDEILARLRARGL 307 Novosphingobium...
Q9ABG6       217 -----AEgadlSDDLPDQVIAGYRAADPGSv-NSLHADRAAGRAMELDARNGVIVRRGAAHGIATPANAMVVALLNAAAL 290 Caulobacter cre...
Q8YX96       236 -----SMgrniPDSFIQTMLDYTVKMKPYR--TSMKIDYDECRPLEVEAIVGNPLHKAQEVGVNLPQINCLYHQLKFLDG 308 Nostoc sp. PCC ...
WP_003113573 240 -----ACgfilPEGYADQLLAATERMPDYR--PSMYHDFAHGRPLELAAIYAAPLARAAAAGYRMPRVEALHQALRFLEA 312 Pseudomonas aer...
WP_011712244 245 -----AAghalADDVIEVNMQATERMQPYR--TSMLLDHEAGREMEVEAIFGNALQRAQQLGRSYPHLQSFYALLRAIGR 317 Magnetococcus m...
WP_029317745 228 -----KEgvpaDPDLEEESFRTMTSMSYHMk-SSMLRDMENGQTTEGDHLHGFLLEKAKRLSLAAPVLETVYANLQMYEA 301 Bacillus subtilis
3EGO_A       295 N 295 Bacillus subtilis
AAK80879     304 L 304 Clostridium acetobutylicum ATCC 824
O67619       305 F 305 Aquifex aeolicus VF5
AAK79572         -     Clostridium acetobutylicum ATCC 824
AAD03849     308 Q 308 Novosphingobium aromaticivorans
Q9ABG6           -     Caulobacter crescentus CB15
Q8YX96       309 R 309 Nostoc sp. PCC 7120
WP_003113573 313 Q 313 Pseudomonas aeruginosa
WP_011712244 318 K 318 Magnetococcus marinus
WP_029317745 302 E 302 Bacillus subtilis
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap