Conserved Protein Domain Family
HTH_31

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pfam13560: HTH_31 
Helix-turn-helix domain
This domain is a helix-turn-helix domain that probably binds to DNA.
Statistics
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PSSM-Id: 433309
Aligned: 93 rows
Threshold Bit Score: 32.4999
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ABS04274        16 ALGMFLRALRNRCqpqevglsgragpaglsgsgayrrvpGLRRQEVADLAGV-SLDYYTRIEQGRCG-EVSGAVLTSLAR 93  
jgi:Amir_2127   10 QIAATLRRMREQA--------------------------GVGRDQAAVLLGC-TISKIGDLETGRS--RPKPVELERLLD 60  
Q5YZ66          27 SLGRCLRGMRQEA--------------------------GLSIEVAARAIGR-GVGTLHRLETGAPNvVVREEDLRRLCK 79   Nocardia far...
CAM05031        13 LIGNELRHYRLQA--------------------------GRTVAESGKVLGC-SHAKITHLETGRYQ--QQPAEVAELLE 63  
CAM06288        13 LVGIELRHFRSRA--------------------------RISAAAAGKEIRT-NQSKIAHMESGRY--RQKPDEVAVLLK 63  
jgi:Snas_5407   13 QLGRFLKEYRLRA--------------------------GLKPGD-AEVVKIaKASKLKAIEAGRVQ-SFRYADILAFGS 64  
WP_015804686    14 IYGVRAREYRETA--------------------------NLEPVATCEKLDI-KRVALSKCEAGLVA--DSETATERKIV 64   Actinosynnema
jgi:Snas_4751   11 VLGETFKRFRQAK--------------------------GWSVNGAARQLGV-SRDRLKNIEDGSS--RLAIVDIVGICR 61  
jgi:Snas_2091   10 LLGDTFKQLRDKR--------------------------DWTKNRAATELGV-SRDKLNAIEESAT--RLSIMDIRGLCS 60  
WP_152538748   414 VLGATLKRLRLAK--------------------------YKKQGSV---QGV-SRNLASGIETGRA--FPSAEELERLLD 461  Saccharopoly...
ABS04274        94 ALRATVEETAHL 105 
jgi:Amir_2127   61 HYGVMGDERGEL 72  
Q5YZ66          80 LYQQVE-MLPVL 90   Nocardia farcinica
CAM05031        64 FYEVSRHDVDRL 75  
CAM06288        64 LYGAPQSEVDRV 75  
jgi:Snas_5407   65 IYDVTRDELDNL 76  
WP_015804686    65 LYGLLGPEAEEF 76   Actinosynnema
jgi:Snas_4751   62 IYGTSQAEEQEL 73  
jgi:Snas_2091   61 TYGASQELEHEL 72  
WP_152538748   462 AYGAKREDRRKL 473  Saccharopolyspora erythraea
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