4JD2,1K8K,2P9I,3DWL,6W17


Conserved Protein Domain Family
ASKHA_NBD_Arp3-like

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cd10221: ASKHA_NBD_Arp3-like 
nucleotide-binding domain (NBD) of actin-related protein3 (Arp3) and similar proteins
Arp3, also called actin-like protein 3, is the ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex is comprised of 7 proteins (Arp2, Arp3, and five conserved proteins, ARPC1-5). It generates cytoplasmic branched filaments networks, by promoting nucleation of actin filaments as 70 degrees branches on the side of older filaments. It is activated, by simultaneously binding to a pre-existing filament and a nucleation promoting factor plus an actin monomer. Daughter branches subsequently detach/debranch from the mother filament. Its Arp2 and Arp3 subunits must be loaded with ATP for it to initiate the assembly of branched actin filaments. ATP hydrolysis may be required for branch initiation or debranching. The Arp2/3 complex is also found in the nucleus where it plays a role in promoting de novo actin polymerization and in RNA polymerase II-dependent transcription. This may in part be through regulating nuclear actin polymerization in a way like its function in the cytoplasm. Human Arp3 and Arp3B are encoded by the ACTR3 and ACTR3B genes respectively. Arp3B is also known as actin-related protein Arp4.
Statistics
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PSSM-Id: 466822
Aligned: 67 rows
Threshold Bit Score: 564.886
Created: 9-Oct-2006
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Structure:4JD2; Bos taurus ARP3 binds CaATP, contacts at 4A
  • Structure:3DWL; Schizosaccharomyces pombe ARP3 binds ATP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         # #### #                                                                    
4JD2_A      7 ACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKesakvgdq------------aqrrvmkGVDDLDFFIGDEaie-----k 69  cattle
Q9SAF1      8 AIVIDNGTGYTKMGFAGNVEPCFILPTVVAVNesflnqsksss-----katwqtqhnagVAADLDFYIGDEalaks-rss 81  thale cress
CAL22910    8 AVVIDNGTGYTKMGFAGNVEPCFIIPTVVALNesflgqsapk-------agtaayhnagVMADLDFYIGEEalakq--hs 78  Physcomitrella patens
ABR16368    8 AVVIDNGTGYTKMGFAGNVEPCFIIPTVVAVNesfvsqsrgsg-----kgswlaqhdaaVKADLDFFIGEEalsrs-hsi 81  Sitka spruce
EFJ18143    8 AVVIDNGTGYSKIGFAGNVEPSFIIPTVVAINesclaasspaalspqgkggwlarhnagVMADLDFFIGDEalart--hg 85  Selaginella moelle...
GAQ82764    8 AVVIDNGTGYTKMGFAGNVEPAFIIPTVVATNetyvksggs---------vtsaqhsagVMADLDFYIGDEatpr----a 74  Klebsormidium nitens
OUS42750   11 AVVIDNGTGWTKMGFARNVRPSHVIPTCVAPNgatt--------------------sgkMMDDLDVAIGREamal----s 66  Ostreococcus tauri
PNW72245   19 AVVMDCGTGFSKIGFAGNAEPSFVIPTVLGPGtpstvtgpgsga---ataglggrpggpLLSDLDFTIGEEalaaatags 95  Chlamydomonas rein...
PSC70778    8 PCTIDVGTGFLKFGLAGEEAPRFVEPTVLGQHpaaa--------------------sssPRGDLDYVIGSAalge---ga 64  Micractinium condu...
RHW70174    5 VVVIDNGTGYTKMGYAGNEEPTYIIPTAYADNeasrr------------------rshdVFSDLDFYVGDEalah----s 62  Trypanosoma brucei...
Feature 1                                                                               #     
4JD2_A     70 ptYATKWPIRHGIVEdWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLntPENREYTAEIMFESFNvPGLYIAVQAVLAL 149 cattle
Q9SAF1     82 stHNLHYPIEHGQVEdWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLtpPESREYTGEILFETFNvPGLYIAVNSVLAL 161 thale cress
CAL22910   79 saYTLSYPIRQGQIEnWDTMERFWQQCLFNYLRCDPEDHYMLLTESPLtaPENREYMGEIMFETFNvPGLYIATQAVLVL 158 Physcomitrella patens
ABR16368   82 ntYNLSYPIRHGQVEnWDTMERYWQQCIFNYLRCDPEDHYFLLTESPLtaPENREYTGEIMFETFNvPGLYIAVQAVLAI 161 Sitka spruce
EFJ18143   86 paYTLTYPIRHGQVDnWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLtaPENREYTAEIMFETFNvSGLYIAVQAVLAL 165 Selaginella moelle...
GAQ82764   75 ssYNINYPIRHGQVDnWDSMERFWQQCIFNYLRCDPEDHFFLLTESPLtpPENREYMAEIMFETFNvPGLYIAVQAVLAL 154 Klebsormidium nitens
OUS42750   67 asREVRWPIRHGTVEnWEDMERFWQASVCRYLRCDPEDHYFLLTEPPLnpPENREYTAEIFFESFNvPGLYIGVQAALAL 146 Ostreococcus tauri
PNW72245   96 agADLTWPVRRGVVGdWDAMERFWQRSLFHHLRVDPEEHCVVVTEPPLnpPEAREAMAEIMFETFNvAGLYVGVQAVLAL 175 Chlamydomonas rein...
PSC70778   65 ggLALTYPMRGGIIQdFDAWEKVMAAAIYRHLAIFPEDHAFILTEPPLntPENREYTAEIMFETFDvPALHIGVQAVLAL 144 Micractinium condu...
RHW70174   63 ssCNLYHPIKHGIVEdWDKMERIWQHCVYKYLRVDPEEHGFILTEPPAnpPENREHTAEVMFETFGvKQLHIAVQGALAL 142 Trypanosoma brucei...
Feature 1                                              # ###                       #          
4JD2_A    150 AASWtsrqv----------------------gertLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQL 207 cattle
Q9SAF1    162 AAGYtts-------------------------kceMTGVVVDVGDGATHVVPVAEGYVIGSCIKSIPIAGKDVTLFIQQL 216 thale cress
CAL22910  159 AAGYtts-------------------------kleMTGLVVDAGDGMTHVVPVADGYIIGSSIKSIPVAGRDLSNFVQQL 213 Physcomitrella patens
ABR16368  162 AAGYtts-------------------------kceMTGVVVDAGDGITHIVPVADGYVIGSAIKSIPIAGRDLTLFVQQL 216 Sitka spruce
EFJ18143  166 AAGYtts-------------------------kceMTGVVVDAGDGVTHVVPVAEGYVMGSSIKSIPVAGRDITSFVQQL 220 Selaginella moelle...
GAQ82764  155 AASDtsg-------------------------kmeLTGTVIDSGDGVTHVVPVVDGYVIGSSIKSIPIAGRDLTNFVQQL 209 Klebsormidium nitens
OUS42750  147 AASIaskkqs--------------------qyasaLTGTVIDIGDGVTHIIPVSDGYVLGSSIKSVPLAGRDLTTFVQYL 206 Ostreococcus tauri
PNW72245  176 YAGWasadraakaasgasassassasasaaavsahLTGTVVDVGEGVTHIIPVVDGYVLGGAIKSLPVAGRAVTGFVQQM 255 Chlamydomonas rein...
PSC70778  145 YASWaaaehkd------------------qergglLTGVVVDSGDGCTHCIPVVDGFVLSSSIRSVPLAGRDVTQHVQQL 206 Micractinium condu...
RHW70174  143 RASWtsgkaqq------------------lglvgeNTGVVVDSGDGVTHIVPIVDGFVMHNAIQHIPLAGRDITNFVLEW 204 Trypanosoma brucei...
Feature 1                      #  ##                                                          
4JD2_A    208 LRDRevgippeqSLETAKAVKERYSYvcpDLVKEFNKYDTdgskWIKQYTGinaisKKEFSIDVGyerFLGPEIFFHPEF 287 cattle
Q9SAF1    217 MRERgenippedSFDVARKVKEMYCYtcsDIVKEFNKHDKepakYIKQWKGvkpktGAPYTCDVGyerFLGPEVFFNPEI 296 thale cress
CAL22910  214 MRERgepvppedSLDIARRVKEMYCYtcaDIAKEFGKHDKepakYVKQWKGnnsktGAPFSCDIGyerFLAPEVFFSPEI 293 Physcomitrella patens
ABR16368  217 MRERgenippedSLEVARRIKEAYCYtcaDIVKEFGKHDRdpekYIKQWTGtkpktGARYSCDVGyerFLAPEVFFNPEI 296 Sitka spruce
EFJ18143  221 MRERgepvppedSFDVARRVKESYGYtcaDIVKEFNKHDRepskYMKQWTGtnsktGQAYSCDIGyerFLAAESFFAPEI 300 Selaginella moelle...
GAQ82764  210 MRDRgepvppedSLDAARRIKELYSYtcaDIVKEYVKHDKepskYIKQWTGlnsrtRQPYSVDVGyerFLAPELYFAPEI 289 Klebsormidium nitens
OUS42750  207 MRERgekippedAMEVARKVKEDHCYvckDMVKEFLAHERkpgeHVVQINGtrgktGEKWSADVGyerFLAPEVFFNPEI 286 Ostreococcus tauri
PNW72245  256 LRDRgepvppemSLEVCRRIKEGHCYvapDMLREFGRYDRdpakYLRSLGLanprtGQEFQVDLGyerFLAPEVFFSPGI 335 Chlamydomonas rein...
PSC70778  207 LRECgakvppdqSLEAARRIKEQYCYvcsDPAREAEKAAAdaskYARQYMGvs-raGTPFAVEVLrerFLGPEIFFNPQL 285 Micractinium condu...
RHW70174  205 LRERgepvpaddALYLAQHIKEKYCYiarNIAREFETYDSdlpnHITKHHAvnrktGESYTVDVGyekFLGPEMFFSPDI 284 Trypanosoma brucei...
Feature 1                                           ### ##                                    
4JD2_A    288 anpd---ftqPISEVVDEVIQNcPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDaRLKLSEELsggrl--kpkp 362 cattle
Q9SAF1    297 ysnd---fttTLPAVIDKCIQSaPIDTRRALYKNIVLSGGSTMFKDFGRRLQRDLKKIVDaRVLANNARtggei--tsqp 371 thale cress
CAL22910  294 yssd---fttPLPEVVDNCIQSaPIDVRRALYKNIVLSGGSTMFKDFQRRLQRDIKKRVDaRTSASEKKsggdh--ksqa 368 Physcomitrella patens
ABR16368  297 yssd---yttPLPVVVDKCIQSsPIDTRRALYKNIVLSGGSTMFKDFPRRLQRDIKKIVDaRIGASDARlggev--ksqa 371 Sitka spruce
EFJ18143  301 cssd---fstPLPEVVDKCIQSaPIDTRRALYKNIVLSGGSTLFKDFQRRLQRDIKKIVDsRTTATAAKyggd----vkp 373 Selaginella moelle...
GAQ82764  290 yssd---fstPLPEVVDKCIQSsPIDTRRALYNNIVLSGGSTLFKDFQRRLQRDIKKLVDtRIAASESLsrkdatfktqa 366 Klebsormidium nitens
OUS42750  287 yssd---yitPLPELVHQAIASsPIDTRRNLYGNIVLSGGSTMFKGFGKRIKRDVKRLVDeRIAATTKGgtlt----ske 359 Ostreococcus tauri
PNW72245  336 sgvap-pgtpSLARAVDDVIQAcPIDTRRALYGNVVLSGGSTMFKNFGRRLAADMTAATSrRLQPGATAi---------- 404 Chlamydomonas rein...
PSC70778  286 ytrgasdwrtPLPDVIDSVVQScPIDTRRSLYGNISLSGGSTMFKHFGHRVQRDVQRAVDgRTGGAGSAv---------- 355 Micractinium condu...
RHW70174  285 fsre---wtlPLPDVIDKAIWScPIDCRRPLYRNVVLSGGTTMFPKFDKRLQKDLRALVSrRGKKFTKAlgdps--kqit 359 Trypanosoma brucei...
Feature 1                #                                    
4JD2_A    363 iDVQVITHHMQRYAVWFGGSMLAStpefyqVCHTKKDYEEIGPSICRH 410 cattle
Q9SAF1    372 vEVNVVSHPVQRFAVWFGGSVLSStpeffaSCRTKEEYEEYGASICRT 419 thale cress
CAL22910  369 vEVNVVGHPMQRFAVWFGGSLLAStpdfynACHTKAEYEEYGSSICRL 416 Physcomitrella patens
ABR16368  372 vDVNVVGHPIQRFAVWFGGSVLAStpefytACHTKEEYEEYGPSICRT 419 Sitka spruce
EFJ18143  374 vEVNVVGHPMQRFAVWFGGSVLASasefytACHTKAEYEEYGPTICRT 421 Selaginella moellendorffii
GAQ82764  367 vDVNVVSHPMQRFAAWFGGSVMASlpdfytSCHTRAEYEEIGPSICRS 414 Klebsormidium nitens
OUS42750  360 vDVEVVTHNFQRTAVWFGGSVLAStpgfysSCVSKADYEEHGANIVRQ 407 Ostreococcus tauri
PNW72245  405 -EIAVRSHAMQRFAVWFGGSLMACdpafgsVCHTREQYQEYGPSICRT 451 Chlamydomonas reinhardtii
PSC70778  356 -DVRVVSHPMQRYAVWYGASLLGLsagfgdIAVTREQYHEHGPSVVRS 402 Micractinium conductrix
RHW70174  360 yDVNVVAHERQRYAVWYGGSMLGMspdfaaVAKTKQEYDEHGPYVCRR 407 Trypanosoma brucei equiperdum

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