Conserved Protein Domain Family
GT4_WbdM_like

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cd04951: GT4_WbdM_like 
LPS/UnPP-GlcNAc-Gal a-1,4-glucosyltransferase WbdM and similar proteins
This family is most closely related to the GT4 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found in bacteria.
Statistics
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PSSM-Id: 340857
Aligned: 5 rows
Threshold Bit Score: 560.14
Created: 21-Feb-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAH08294    2 NILYIITglgiGGAEKVTVDLANLmqdkGNNVAILYLYGDnqytsliyksifvkglsmsktpksfYLSLIKAREilkKFR 81  Bacteroides fragil...
AAD46732    2 KIVYIITgltcGGAEHLMTQLADQmfirGHDVNIICLTGIsevkptqninih--yvnmdknfrsfFRALFQVKKiivALK 79  Escherichia coli
AAL25631    2 KILYVITglglGGAEKQLSLLADNftarGEQVSIVYLTGEvlvkpknkniki-ynlgidksfsslIKGIWKLKSiisDVR 80  Edwardsiella ictaluri
AAS73172    4 RIIFVITglglGGAEKQICLLADKlylhNNEVNIVVLNGNvnvtplneniri-hnlhmkknplglLNAVLRLVKiisYFK 82  Escherichia coli
YP_098831   2 NIIYVITglslGGAETITVCLANEmrrrGHHVAILYLTGEnwfkdridrdiivqslglsknpfslLKAQLKAKQflkVFS 81  Bacteroides fragil...
CAH08294   82 PDVVHAQmfhaNIFARFlrff-ykipLLICTEHSKNIESKIRMRLYQITDFLSDVNTNVSREATEYFISHHAFSDLKSFP 160 Bacteroides fragil...
AAD46732   80 PDIIHSHmfhaNIFSRFirml-ipavPLICTAHNKNEGGNARMFCYRLSDFLASITTNVSKEAVQEFIARKATPKNKIVE 158 Escherichia coli
AAL25631   81 PDVIHSHmyhaNILARIscclslfssRLVCSAHNKNEGGRVRMIIYRMTDFLCAKTTNVSQEALDEFITKKAFRKRKSSL 160 Edwardsiella ictaluri
AAS73172   83 PDIVHGHmfhaNIVARLakvftynkyKLICTAHSKNEGGHIRMLVYRLTDFLCDATTNVSNEALDVFIKKKAFSKSKSIP 162 Escherichia coli
YP_098831  82 PQVVHGNmvhaNIFVRLlrlh-chipLLISTEHNKNIEGRLRMKIYQYTDFLSDINTNVSREATTYFIQQKAFGRNKSMT 160 Bacteroides fragil...
CAH08294  161 MYNGIYLEKfeksnesklvlknkiglenNEFVFLNVGRlvqAKDQTSLLLAFSDFlkty---klnaKLVIVGEGPLRDNL 237 Bacteroides fragil...
AAD46732  159 IPNFINTNKfdfdinvrkktrdafnlkdSTAVLLAVGRlveAKDYPNLLNAINHLilsktsncndfILLIAGDGALRNKL 238 Escherichia coli
AAL25631  161 VYNGIDLSIfkkkstniqniknklginfDEKVIFCAGRlteAKDYPNLILAISKMhqk------kcKIIIAGDGPMRSDI 234 Edwardsiella ictaluri
AAS73172  163 VYNGIDTDLfkydplqrdkirhslniinDDSLILSVGRltdAKDYPNLLKALLELpe-------ryKLVIIGEGEARNEV 235 Escherichia coli
YP_098831 161 VYNGIDLVRfgrnedkrlkirtqysvsnNEFLFLNVARltpAKDHVNLLLAFKETcsic----pdiKLLIVGDGELKKEL 236 Bacteroides fragil...
CAH08294  238 cnyinnldiRENVILAGFHSNVSEYynaADCFVLSSLWEGFGIVLAEAMScGLPVITTDAGGCREVVEdSRFVISlqNPQ 317 Bacteroides fragil...
AAD46732  239 ldlvcqlnlVDKVFFLGQRSDIKELmcaADLFVLSSEWEGFGLVVAEAMAcERPVVATDSGGVKEVVGpHNDVIPvsNHI 318 Escherichia coli
AAL25631  235 erlidrchlSHRILLIGIIDNISDYynlSDLFVLPSRWEGFGLVVAEAMAcECPVIATDAGGVAEVLSnADWLVPiaDSS 314 Edwardsiella ictaluri
AAS73172  236 ertilnyglEKRVKLLGSIANVATYysaCDIYVSSSKWEGFGLVVAEAMScQRLVVATNAGGVAEVVGdMNYIVPvsDPQ 315 Escherichia coli
YP_098831 237 eekvkelklINNVIFAGAHIHIEDYysaADCFVLSSAWEGFGLVLAEAMAaNLPVLTTDAGGCAEVVDdYEYVVPthDPF 316 Bacteroides fragil...
CAH08294  318 EITLKMKeif--dmsLEERDMLGNm-nSIRAKKFDINIIGEKWTQIYSL 363 Bacteroides fragilis NCTC 9343
AAD46732  319 LLAEKIAetl--kidDNARKIIGMknrEYIVSNFSIKTIVSEWERLYFK 365 Escherichia coli
AAL25631  315 KLAEKIDeffl-ldsSEVKDIKAKn-kDHCENQFSIGAIINNWYAIYNG 361 Edwardsiella ictaluri
AAS73172  316 LLANKINevmefdheTKMEVMYRNr--EFVLKMFSIDMIVNQWMKLYSS 362 Escherichia coli
YP_098831 317 LLADKMKkiv--imsPEEREQLGNt-nKDKAKRFDINSIVKEWEDLYLG 362 Bacteroides fragilis YCH46
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