2NTY,3BWD,2WBL,2J0V


Conserved Protein Domain Family
Rop_like

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cd04133: Rop_like 
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Rho-related protein from plants (Rop)-like
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Statistics
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PSSM-Id: 206705
Aligned: 12 rows
Threshold Bit Score: 291.75
Created: 6-Dec-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Comment:Rho molecules assume an active conformation when bound to GTP and inactive when GTP is hydrolyzed to GDP
  • Comment:Mg2+ ion plays a key role in bringing together the functional regions of the phosphate-binding, switches I and II
  • Citation:PMID 9545299
  • Structure:2NTY: Arabidopsis thaliana Rop4 in complex with GDP; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  ######                                        ## #                    
2NTY_C         6 FIKCVTVGDGAVGKTCMLISYTSNt--FPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQedynrLRPLSYRGADVFIL 83  thale cress
CAB96793       6 FIKCVTVGDGAVGKTCMLICYTSNk--FPTDYIPTVFDNFSANVSVDGSIVNLGLWDTAGQedysrLRPLSYRGADVFVL 83  maize
AAO42256       6 FIKCVTVGDGAVGKTCLLISYTSNt--FPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQedynrLRPLSYRGADVFLL 83  thale cress
AAF43429       6 FIKCVTVGDGAVGKTCMLISYTSNt--FPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQedynrLRPLSYRGADVFLL 83  Physcomitrella ...
BAD87776      23 AEVDEVVSRGDVQCPGAVVFNGDVhvdFRPDYIPTVFDNFSANVSVDGDIVNLGLWDTAGR-----LRLLSYRGADIFVL 97  Japanese rice
BAA84494       8 FIKCVTVGDGAVGKTCMLICYTSNk--FPTDYIPTVFDNFSANVVVDSTTVNLGLWDTAGQedynrLRPLSYRGADVFVL 85  Oryza sativa
3BWD_D         8 FIKCVTVGDGAVGKTCLLISYTSNt--FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQedynrLRPLSYRGADVFIL 85  thale cress
2WBL_C         6 FIKCVTVGDGAVGKTCMLISYTGNt--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQedynrLRPLSYRGADVFLL 83  thale cress
ADE75718       6 FIKCVTVGDGAVGKTCMLISYTSNt--FPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQedynrLRPLSYRGADVFLL 83  Sitka spruce
XP_002982092   6 FIKCVTVGDGAVGKTCMLISYTSNt--FPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQedynrLRPLSYRGADVFLL 83  Selaginella moe...
AEO36516       6 FIKCVTVGDGAVGKTCMLISYTSNt--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQedynrLRPLSYRGADVFLL 83  Amblyomma macul...
2J0V_A         9 FIKCVTVGDGAVGKTCMLICYTSNk--FPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQedysrLRPLSYRGADIFVL 86  thale cress
Feature 1                                           # #                                         #
2NTY_C        84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFiDHPGAvpITTNQGEELKKLIGSP---IYIECSS 160 thale cress
CAB96793      84 AFSLISRASYENVLKKWVPELRRFAPNVPVVLVGTKLDLRDHRAYLaDHPGAsaVTTAQGEELRKQIGAA---AYIECSS 160 maize
AAO42256      84 AFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFaEHPGAvpISTAQGEELKKLIGAP---AYIECSA 160 thale cress
AAF43429      84 AFSLISKASYENISKKWIPELRHYAPSVPIILVGTKLDLRDDKQFFaDHPGAapITTSQGEELRKSIGAA---SYIECSS 160 Physcomitrella ...
BAD87776      98 AFSLISRASYENALKKGMPELRRFAPNAPIVLVGTKLDLRDHKSYLaDHPAAssITTAQNIKALFDTAIK---VVLEPPR 174 Japanese rice
BAA84494      86 AFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLDLREDKHYLlDHPGMipVTTAQGEELRKQIGAA---YYIECSS 162 Oryza sativa
3BWD_D        86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFiDHPGAvpITTVQGEELKKLIGAP---AYIECSS 162 thale cress
2WBL_C        84 AFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLkDHPGAasITTAQGEELRKMIGAV---RYLECSS 160 thale cress
ADE75718      84 AFSLISKASYENISKKWIPELRHYAPNVPIILVGTKLDLRDDKQFFaDHPGAapITTPQGEELKKQIGAA---AYIECSS 160 Sitka spruce
XP_002982092  84 AFSLISRASYENISKKWIPELKHYAPTVPVILVGTKLDLRDDKQFFaDHPGAtpITTVQGEELRKQIGAA---AYIECSS 160 Selaginella moe...
AEO36516      84 AFSLISKASYENVAKKWIPELRHYAPGIPIVLVGTKLDLRDDDQFFvDHPGAvpISTAQGEEQEFVRVVCgehWFQWFES 163 Amblyomma macul...
2J0V_A        87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLaDHTNV--ITSTQGEELRKQIGAA---AYIECSS 161 thale cress
Feature 1        #                  
2NTY_C       161 KTQQ-NVKAVFDAAIKVVL 178 thale cress
CAB96793     161 KTQQ-NVKSVFDTAIKVVL 178 maize
AAO42256     161 KTQQ-NVKAMFDAAIKVVL 178 thale cress
AAF43429     161 KTQQ-NVKAVFDAAIKVVL 178 Physcomitrella patens
BAD87776     175 RRGE-TTMARKKTRRSTGC 192 Japanese rice
BAA84494     163 KTQQ-NVKGVFDAAIKVVI 180 Oryza sativa
3BWD_D       163 KSQE-NVKGVFDAAIRVVL 180 thale cress
2WBL_C       161 KTQQ-NVKAVFDTAIRVAL 178 thale cress
ADE75718     161 KTQQ-NVKAVFDAAIKVVL 178 Sitka spruce
XP_002982092 161 KTQQ-NVKAVFDAAIKVVL 178 Selaginella moellendorffii
AEO36516     164 LSTNyEVDSSTLHPSGKRR 182 Amblyomma maculatum
2J0V_A       162 KTQQ-NVKAVFDTAIKVVL 179 thale cress

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