Conserved Protein Domain Family
Spg1

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cd04128: Spg1 
Septum-promoting GTPase (Spg1)
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Statistics
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PSSM-Id: 206701
Aligned: 11 rows
Threshold Bit Score: 315.873
Created: 30-Aug-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Comment:Based on sequence similarity with other Rab isoforms.
  • Comment:The active conformation of Rab is stabilized by interations between the gamma phosphate of GTP and two critically conserved residues, Thr in switch I and Gly in switch II

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #######         #      ##                         #                     
P87027     11 IKVGMIGDSSIGKTSLMVTYVQGSFDee-sTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFV-NMLPMVCNDAVAILF 88  fission yeast
CAI77247   36 LKVGMVGDSQIGKTSLMVRYVEGSFNed-yIQTLGVNFMEKTISIRNTEITFSIWDLGGQREFV-NMLPLVCNDAVAILF 113 Ustilago maydis 521
EAL02421   41 LKIGLIGDSQIGKTSLMVKYVEGSFDed-yIQTLGVNFMDKKIQIRNTTITFSIWDLGGQKEFI-NMLPLVSNDAVAILF 118 Candida albicans S...
XP_635107  19 VKVGMVGDSQIGKTSLMVKYVEGTFDed-yIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFV-NMLPLVCNDAVAILF 96  Dictyostelium disc...
XP_657549   6 LKIAMVGDAGVGKTSLMVKYVEGNFDed-yIQTLGVNCMEKTISLKGKEVTFSVWDLGGQREYI-TMLPMVMDGARVILF 83  Entamoeba histolyt...
AAO39054   17 VKIALLGNAEAGKTSLMVRYVEGEFNhn-yIQSLGVNFMERTITLHDNPVLLSIWDLGGESEFK-NMLPLVCDGSMVFLY 94  Giardia intestinalis
P38987     21 VQVGLVGDAQVGKTSLMVKYVQNIYDke-yTQTLGVNFLKRKVSIRSTDIIFSIMDLGGQREFI-NMLPIATVGSSVIIF 98  baker's yeast
BAC79616  113 LKVSLLGDCQIGKTSFMVKYVGDDEEqn-gLQMTGLNLMDKTLAVRGARIAFSIWDVAGDSQFL-DHVPIACKDAVAILY 190 Japanese rice
BAB02832  107 LKISLLGDPEIGKTSFLAKYVGEEKEvemrELEKGINCTDKTLYMGGARISYSIWELEGAERSR-DQIPVACKDSVAILF 185 thale cress
BAB08763  102 LKISLLGDCQTGKTTFVVKYVGDENQs--fLEMTGLNLMDKTFYVQGVTISFSIWDVGGDEKRSkDHIPIACKDAVAILF 179 thale cress
CAH02151   17 VKVGLIGDAQVGKTSLMVKYVQNVFDee-yTQTLGVHYLERKVVLGSTDVIFSIMDLGGQREFI-NMLPLVSEGAVAIVF 94  Kluyveromyces lact...
Feature 1                                      ## #                                ###        
P87027     89 MFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGTKYDHFMTFPREDQEEITKQARRYAKAMk-aSLVFCSTSHSINVQKI 167 fission yeast
CAI77247  114 MFDLTRKSTLNSIKEWYRQARGFNKTAIPFLVGTKYDHYATLPREEQDEITKQARRFSKAMk-aPLIFCSTSHAINVQKI 192 Ustilago maydis 521
EAL02421  119 MFDLTRKSTLNSIKEWYRQVRGFNKTAIPFLVGTKYDQFIDLSFQDQIEITQQAKKFGSAMk-aPVIFCSTSHSINVQKI 197 Candida albicans S...
XP_635107  97 MFDLSRKSTLNSVKEWYRQARGFNKTAIPFLIGTKFDVFATKPIEEQEEITKQARKFASAMk-sPLIFCSTSHSINVQKI 175 Dictyostelium disc...
XP_657549  84 FFDLTRVMTLNNIKDWYKEARAHNNSASCILVGTKYDLFADLDATEKSRITATALKYAQAMk-aSCVFCSSSQGINIQNV 162 Entamoeba histolyt...
AAO39054   95 IFDLTSKTSLASIKEWYRQAKALNRSAFPVLVGAKYDRFRELREDKKREIIEHARRYSKAMkncPLVFTSAELGVNINRL 174 Giardia intestinalis
P38987     99 LFDLTRPETLSSIKEWYRQAYGLNDSAIPILVGTKYDLLIDLDPEYQEQISRTSMKYAQVMn-aPLIFCSTAKSINIQKI 177 baker's yeast
BAC79616  191 MFDLTSRCTLTNVIDWYERARKWNKTAIPILIGTKFDDFAQLPLEMQWTIVNEARAYARAMk-aTLFFSSSTHNINVNKI 269 Japanese rice
BAB02832  186 MFDLTSRCTLNSVISWYQQARKSNQTAIPVMVGTKFDEFIQLPIDLQWTIASQARTYAKALn-aTLFFSSASYNINVNKI 264 thale cress
BAB08763  180 MFDLTSRSTLNSVFGWYSQARKWNKTAIPILIGTKFDDFVRLPPNLQWTIVTQARAYAKVMn-aSLFFSSATHNINVNKI 258 thale cress
CAH02151   95 LFDLTRPETLNSIKEWYRQARGFNDTAISILVGTKYDLFVDMDPEYQENVSRTAMKYAQVMk-sPLIFCSTQSSINVQKI 173 Kluyveromyces lact...
Feature 1                              
P87027    168 FKIVLAKVFDLKCTIPEIKNVGDPI 192 fission yeast
CAI77247  193 FKVLLAKAFDLKCTIPEIKGPGEPL 217 Ustilago maydis 521
EAL02421  198 FKIILSKAFDLKLNLDEIVNVGEPI 222 Candida albicans SC5314
XP_635107 176 FKIVISKAFDLNCTIPKVVGVGEPL 200 Dictyostelium discoideum AX4
XP_657549 163 FKVSLAKVFGLTLNVPQTTEGAVLV 187 Entamoeba histolytica HM-1:IMSS
AAO39054  175 FKLVVCLVFGLNPGIEQIEADDQPI 199 Giardia intestinalis
P38987    178 FKIALAKIFNLTLTIPEINEIGDPL 202 baker's yeast
BAC79616  270 FKFITAKLFNLPWTVERNLTVGEPI 294 Japanese rice
BAB02832  265 FKFVTAKLFDLPWTVERNLTIGEPI 289 thale cress
BAB08763  259 FKFILARLFNLPWKIDRNLTLGEPI 283 thale cress
CAH02151  174 FKVVIAKAFNLTLKVPEYKQIGEPL 198 Kluyveromyces lactis NRRL Y-1140

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