3D6W


Conserved Protein Domain Family
LytTR

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smart00850: LytTR 
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LytTr DNA-binding domain
This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.
Statistics
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PSSM-Id: 197918
Aligned: 436 rows
Threshold Bit Score: 41.0218
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3D6W_A        11 DGWIPVPFSKVXYLEAKD-KKTYVN-AEE-LTGTHK-YSLQEFEYLlPKDSFIRCHRSFIVNVNHIKAIYPDTHSTFLLS 86  Bacillus cereus...
YP_001410750 156 NEIVLVNCDDIILFQASE-GLTVVN-LKQ-GILKTK-TPLKEFEAKlSKDKFIRVHKSYIISINAVKKILKNYIGGLAIE 231 Fervidobacteriu...
YP_001196305 150 eaMYVVKLDQILRCETSG-SYTTFFlTDG-RKIMVS-KPLKNYEDIlLPPMFFRVHQSHLINVNSILSYSREG----MVH 222 Flavobacterium ...
YP_001296399 153 SGFEVIQANSIVYCKSDG-SYSNIF-IID-KELFTS-KSLKEIEDIlVDSNFIRIHKSYIVNKNYIKGFKSDE---FKLD 225 Flavobacterium ...
YP_001196813 134 KTIKLITITDIKYIKGAG-IYTELH-LHD-GRIELHdKSLESLE-KlLPITFERIHKSYILCWNEAEKLVVEAGGRYQML 209 Flavobacterium ...
YP_001193148 164 GDHRYINADDISYFQADN-NSTDIY-LNSgEMITAF-KTLKHFEHVlSY-PFVRIHNSYIINRNYIARIHN----GNSIC 235 Flavobacterium ...
YP_862649    152 EGFELIHSNQILYCKAES-NYCCIK-KIEgTTKTAT-KTLKYVEEIlPATSFKRIHKTYVINLNYVVRYNKa-NKEVELT 227 Gramella forset...
YP_817553    138 AHLVQFDLNHLSYVSSNKgTHYINV-FTKnGVSKIR-NTIKTIASS--HENFIQIHASFCINRDFIKQy---LKSEKIIE 210 Leuconostoc mes...
YP_100240     30 DEYRRVLLDEILWLEASG-SYCVLC-MENgAEITVSyPLDRIFNNDlPRGKFQRIHRSYAINVFKVTg----FAGNYVHI 103 Bacteroides fra...
YP_268549    159 GSIEVAKADEVQWIESSG-NYVKIC-LERtAFIAR--QTLTGVQSQlDPTIFVRIHRSHVININEVIQVTPiSKGDHTLQ 234 Colwellia psych...
3D6W_A        87 XDNGERV--PVSQSYASYFRKL 106 Bacillus cereus ATCC 10987
YP_001410750 232 LINGNII--PVGRMYKENIKKI 251 Fervidobacterium nodosum Rt17-B1
YP_001196305 223 MNDKSVV--PISRGKKEQFFKL 242 Flavobacterium johnsoniae UW101
YP_001296399 226 LITGDSI--PVSdtlfskkklm 245 Flavobacterium psychrophilum JIP02/86
YP_001196813 210 LKNGEIL--PVGRSKYKEIKYK 229 Flavobacterium johnsoniae UW101
YP_001193148 236 YIKNSSKkiPFSKTYKSNVDLI 257 Flavobacterium johnsoniae UW101
YP_862649    228 --NGEKL--PVSFRKEEEFINA 245 Gramella forsetii KT0803
YP_817553    211 LTDGTLL--PVTRKFQHHLIQF 230 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
YP_100240    104 -GKKML---PVSESHKKNFLAC 121 Bacteroides fragilis YCH46
YP_268549    235 LRSGTEL--RLSRAYQENFFKV 254 Colwellia psychrerythraea 34H
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