1HNW,1EG0,2YKR,3J7A,3J9M,4U3M,4V61,4V8M,5MMJ,5O5J,5XXU,5XYI,6HIV,6RM3,6SPC,6SW9,6V39,6ZJ3,6ZU5,7OOC,7PWF,7QCA,7QEP,8A22


Conserved Protein Domain Family
Ribosomal_uS17
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cd00364: Ribosomal_uS17 
Ribosomal protein uS17
Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.
Links
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Statistics
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PSSM-Id: 466775
Aligned: 323 rows
Threshold Bit Score: 55.896
Created: 6-Mar-2002
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
Download Cn3D
 
RNA binding
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1HNW: Thermus thermophilus 30S ribosomal protein S17 binds 16S rRNA contact at 4A
  • Comment:Ribosomal protein uS17 is one of ribosomal assembly proteins that stabilizes the rRNA
Download Cn3D for Viewing 3D StructureScroll to Sequence Alignment Display
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1        #       #    ### #    #      ### ########                 ##       ###    
1HNW_Q         4 KVLTGVVVSDk-MQKTVTVLVERQFPhplYGKVIKRSKKYLAHDPeeKYKLGDVVEIIESRPISKRKRFRVLRL 76  Thermus thermophilus
NP_595464      3 LNYVGIVISRa-MPKTAKVRVAKEKFhpvVKKYVTQYQNYMVQDDl-NCNVGDAVTIQPCRPRSATKRFEIIKI 74  fission yeast
XP_712630      4 QNFVGVVISQgkMTKTVKVRVQGRVYdkrVDKEILTRKDYLVHDEgsICKEGDIVRIESIPKISKRKAFAIAEI 77  Candida albicans SC5314
XP_006681765   7 QSFVGRVIGTa-MQKTIKVRVERVKIhpiVLKPIRRHKNFLVHDEtsQCVVGDWVRINSCTKISKLKSFTLGEI 79  Batrachochytrium dend...
XP_016606416  18 QMFYGEVIGTa-MQKTIKVRVARPRIhpvVQKPITFHKTFLAHDEheRCVVGDWVRIDSCQKISKRKNFTLGEI 90  Spizellomyces punctat...
XP_018225607   3 QNFKGIVVSSglMNKTVKVKVIRKVLhpkVHKLITLHKNYLVHDEgsVCKNGDLVRIEACRPLSARKRFAVAEI 76  Pneumocystis carinii B80
XP_018229180   3 QNFKGIVVSSglMKKTVKVRVARRVMhprVQKMIILHKNYLVHDEdsACENGDVVKIEACRPLSARKHFSVAQI 76  Pneumocystis jiroveci...
XP_029319704   4 LNFLGFVISQgkMEKTIKVRILQKKFdrkVQKYFLQKKDYLVHDEgnICREGDLVRIEQTRPLSARKFFAVAEI 77  Pichia kudriavzevii
KAF1802776     3 QNFIGMVVSNa-MQKTIKVKVTSQKLhpiVLKTIKTHKNYLVHDEkeACKLGDVVRIEACRPLSKHKHFAVAEV 75  Mucor lusitanicus
XP_040743557   3 HNFIGMVVSAa-RPKTVKVRVPKRVMnhhVQKELLVHKNYLAHDElsQCTIGDVVRIEHCRKVSRHKSFAIAEI 75  Linderina pennispora

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